Wall clock time and date at job start Tue Mar 31 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86801 * 120.00404 * 2 1 4 4 H 1.48502 * 109.47010 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46932 * 300.00167 * 3 2 1 6 6 H 1.48497 * 109.46784 * 60.00085 * 3 2 1 7 7 C 1.40091 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00005 * 179.97438 * 7 2 1 9 9 C 1.40938 * 120.00000 * 0.02562 * 7 2 1 10 10 N 1.33701 * 119.12362 * 179.97438 * 9 7 2 11 11 C 1.31533 * 120.83540 * 180.02562 * 10 9 7 12 12 C 1.40555 * 119.08853 * 359.97438 * 11 10 9 13 13 C 1.47712 * 120.80138 * 179.97438 * 12 11 10 14 14 C 1.39855 * 120.00431 * 359.72551 * 13 12 11 15 15 C 1.37768 * 119.91431 * 180.33964 * 14 13 12 16 16 C 1.38995 * 120.07331 * 0.02562 * 15 14 13 17 17 C 1.39660 * 120.37981 * 359.88009 * 16 15 14 18 18 C 1.38198 * 119.69456 * 0.13624 * 17 16 15 19 19 O 1.35953 * 120.77031 * 180.28860 * 17 16 15 20 20 C 1.42961 * 117.71418 * 339.85431 * 19 17 16 21 21 C 1.53532 * 108.77269 * 49.31408 * 20 19 17 22 22 N 1.39883 * 119.91254 * 179.77543 * 16 15 14 23 23 C 1.40553 * 118.39967 * 0.25528 * 12 11 10 24 24 N 1.31536 * 119.08453 * 359.50469 * 23 12 11 25 25 H 0.97002 * 119.99376 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.45897 * 180.02562 * 11 10 9 27 27 H 1.08000 * 120.04684 * 0.31036 * 14 13 12 28 28 H 1.07997 * 119.95960 * 180.02562 * 15 14 13 29 29 H 1.07995 * 120.02726 * 179.97438 * 18 17 16 30 30 H 1.09001 * 109.58519 * 169.09808 * 20 19 17 31 31 H 1.09000 * 109.58383 * 289.52746 * 20 19 17 32 32 H 1.08999 * 109.82780 * 61.29037 * 21 20 19 33 33 H 1.08997 * 109.82853 * 182.23805 * 21 20 19 34 34 H 0.97007 * 121.10732 * 346.16232 * 22 16 15 35 35 H 1.07999 * 120.45714 * 179.74757 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.7011 1.3462 0.0006 5 1 1.8823 2.3964 -1.2125 6 1 1.8823 2.3963 1.2125 7 6 2.0073 -1.2133 -0.0005 8 1 3.0874 -1.2133 -0.0010 9 6 1.3026 -2.4338 -0.0016 10 7 1.9887 -3.5813 -0.0027 11 6 1.3653 -4.7396 -0.0042 12 6 -0.0401 -4.7591 -0.0042 13 6 -0.7787 -6.0383 -0.0065 14 6 -0.0796 -7.2496 -0.0145 15 6 -0.7704 -8.4415 -0.0236 16 6 -2.1604 -8.4410 -0.0255 17 6 -2.8663 -7.2359 -0.0156 18 6 -2.1764 -6.0385 -0.0067 19 8 -4.2257 -7.2262 -0.0115 20 6 -4.9004 -8.4068 -0.4530 21 6 -4.2977 -9.6198 0.2698 22 7 -2.8584 -9.6532 -0.0396 23 6 -0.7258 -3.5322 -0.0081 24 7 -0.0343 -2.4133 -0.0016 25 1 -0.4849 0.8401 0.0004 26 1 1.9256 -5.6629 -0.0046 27 1 1.0004 -7.2506 -0.0139 28 1 -0.2313 -9.3773 -0.0294 29 1 -2.7168 -5.1035 0.0005 30 1 -5.9618 -8.3310 -0.2169 31 1 -4.7705 -8.5209 -1.5292 32 1 -4.4424 -9.5188 1.3454 33 1 -4.7732 -10.5347 -0.0838 34 1 -2.4093 -10.4877 -0.2467 35 1 -1.8055 -3.5085 -0.0123 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241453464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:57 Heat of formation + Delta-G solvation = 40.558016 kcal Electronic energy + Delta-G solvation = -20734.956985 eV Core-core repulsion = 17505.098417 eV Total energy + Delta-G solvation = -3229.858568 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35249 -38.94741 -37.03486 -35.24546 -33.91200 -31.98300 -31.66005 -30.11242 -29.30252 -27.31986 -25.55396 -24.05324 -23.16831 -22.17702 -21.18918 -19.91753 -17.99955 -17.54183 -17.24696 -16.44485 -15.85478 -15.27667 -15.11502 -14.70618 -14.32547 -14.11312 -13.75220 -13.33497 -13.23302 -13.07149 -12.73257 -12.59625 -12.24350 -11.70712 -11.47626 -11.38106 -11.24877 -10.82808 -10.79539 -10.51063 -10.30550 -10.04225 -9.49155 -9.18030 -9.16982 -8.28260 -7.95637 -7.36759 -6.77196 -6.64252 -4.74855 1.60986 1.85474 2.72581 2.98680 3.00468 3.06799 3.08948 3.32282 3.59858 3.80009 4.29694 4.59091 4.67644 4.87638 4.96281 5.09969 5.29513 5.49026 5.60828 5.67845 5.74130 5.82950 5.88959 5.96279 5.98511 6.24725 6.31426 6.57295 6.64182 6.77002 6.90733 7.06710 7.12550 7.21308 7.50440 7.62095 7.72496 7.86719 8.06075 8.39476 8.47311 9.04619 9.99959 10.19742 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.039868 B = 0.003476 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.144161 B = 8052.839944 C = 8720.772042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.060 3.940 3 Si 0.921 3.079 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.379 4.379 8 H 0.096 0.904 9 C 0.379 3.621 10 N -0.594 5.594 11 C 0.185 3.815 12 C -0.321 4.321 13 C 0.025 3.975 14 C -0.132 4.132 15 C -0.141 4.141 16 C 0.099 3.901 17 C 0.068 3.932 18 C -0.132 4.132 19 O -0.316 6.316 20 C 0.045 3.955 21 C 0.090 3.910 22 N -0.761 5.761 23 C 0.179 3.821 24 N -0.508 5.508 25 H 0.278 0.722 26 H 0.132 0.868 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.401 0.599 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 -13.663 -0.587 15.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.168 4.168 3 Si 0.745 3.255 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.412 4.412 8 H 0.114 0.886 9 C 0.147 3.853 10 N -0.312 5.312 11 C 0.010 3.990 12 C -0.331 4.331 13 C 0.022 3.978 14 C -0.151 4.151 15 C -0.163 4.163 16 C 0.000 4.000 17 C 0.021 3.979 18 C -0.151 4.151 19 O -0.230 6.230 20 C -0.032 4.032 21 C -0.035 4.035 22 N -0.398 5.398 23 C 0.002 3.998 24 N -0.224 5.224 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.139 0.861 28 H 0.134 0.866 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.236 0.764 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.403 -12.247 -0.483 14.319 hybrid contribution -0.143 -0.930 -0.149 0.953 sum -7.546 -13.178 -0.632 15.198 Atomic orbital electron populations 1.70156 1.07439 1.28507 1.25596 1.26223 0.95121 1.01743 0.93746 0.86033 0.80849 0.79882 0.78786 1.17981 1.19513 1.19513 1.19485 0.95110 0.87869 1.38711 0.88561 1.19955 0.86006 0.90869 0.88505 1.68648 1.40782 0.98475 1.23296 1.22688 0.90483 0.95796 0.89996 1.19687 0.95115 0.93023 1.25307 1.18302 0.90960 0.92358 0.96189 1.20882 0.99447 0.91028 1.03732 1.20278 0.91056 0.98200 1.06792 1.17727 0.91556 0.85265 1.05476 1.18296 0.81529 0.92502 1.05586 1.20383 0.93178 0.95516 1.06034 1.86045 1.16571 1.37856 1.82575 1.23171 0.96710 0.84801 0.98515 1.22093 0.82512 0.99057 0.99883 1.44267 1.07638 1.06321 1.81571 1.23101 0.99108 0.87942 0.89603 1.69355 1.08038 1.26817 1.18184 0.91058 0.85052 0.86089 0.86634 0.85436 0.87402 0.91991 0.91795 0.89576 0.76411 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.92 11.40 55.55 0.63 -17.28 16 2 C 0.06 1.48 5.50 -17.34 -0.10 1.39 16 3 Si 0.92 17.97 29.56 -169.99 -5.02 12.95 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.38 -10.18 9.34 -37.87 -0.35 -10.53 16 8 H 0.10 2.47 7.85 -52.49 -0.41 2.06 16 9 C 0.38 10.64 7.35 -158.13 -1.16 9.48 16 10 N -0.59 -15.66 10.33 -12.40 -0.13 -15.79 16 11 C 0.19 4.26 10.70 -16.81 -0.18 4.08 16 12 C -0.32 -7.21 5.94 -104.28 -0.62 -7.82 16 13 C 0.03 0.49 5.88 -104.85 -0.62 -0.13 16 14 C -0.13 -2.21 9.45 -39.15 -0.37 -2.58 16 15 C -0.14 -2.09 9.91 -39.47 -0.39 -2.48 16 16 C 0.10 1.48 6.51 -83.37 -0.54 0.94 16 17 C 0.07 1.15 6.51 -39.07 -0.25 0.90 16 18 C -0.13 -2.43 9.36 -39.03 -0.37 -2.80 16 19 O -0.32 -4.87 10.32 -19.59 -0.20 -5.08 16 20 C 0.04 0.47 7.19 37.43 0.27 0.74 16 21 C 0.09 0.83 7.35 -3.35 -0.02 0.81 16 22 N -0.76 -8.65 5.90 -57.55 -0.34 -8.99 16 23 C 0.18 4.35 10.70 -16.81 -0.18 4.17 16 24 N -0.51 -14.01 7.82 -12.40 -0.10 -14.10 16 25 H 0.28 6.36 8.29 -40.82 -0.34 6.03 16 26 H 0.13 2.53 6.32 -52.48 -0.33 2.20 16 27 H 0.12 1.86 6.27 -52.49 -0.33 1.53 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.13 2.32 6.27 -52.49 -0.33 2.00 16 30 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.40 3.61 8.90 -40.82 -0.36 3.24 16 35 H 0.13 2.83 6.32 -52.49 -0.33 2.50 16 LS Contribution 299.17 15.07 4.51 4.51 Total: -1.00 -31.38 299.17 -8.88 -40.26 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -3.34 Total: 7.37 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -4.89 Total: -3.84 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.07 Total: -56.17 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.20 Total: -5.08 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.02 Total: 12.95 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.38 -8.88 -40.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241453464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.815 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds