Wall clock time and date at job start Tue Mar 31 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48503 * 109.46867 * 239.99899 * 3 2 1 5 5 H 1.48502 * 109.46815 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47116 * 120.00162 * 3 2 1 7 7 C 1.40042 * 119.99454 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99700 * 186.30267 * 7 2 1 9 9 C 1.41307 * 120.00269 * 6.30088 * 7 2 1 10 10 C 1.40861 * 120.14857 * 173.75577 * 9 7 2 11 11 N 1.31868 * 119.97558 * 179.97438 * 10 9 7 12 12 C 1.32189 * 120.28696 * 359.72147 * 11 10 9 13 13 C 1.40040 * 120.29722 * 0.53895 * 12 11 10 14 14 C 1.48210 * 119.99302 * 179.74567 * 13 12 11 15 15 C 1.39461 * 120.10925 * 184.74252 * 14 13 12 16 16 C 1.37921 * 120.16361 * 180.02562 * 15 14 13 17 17 C 1.38846 * 120.23193 * 0.02562 * 16 15 14 18 18 C 1.39415 * 119.74706 * 359.84507 * 17 16 15 19 19 C 1.38308 * 120.28629 * 0.22454 * 18 17 16 20 20 N 1.40420 * 119.73441 * 180.24349 * 18 17 16 21 21 C 1.47291 * 117.70721 * 346.16772 * 20 18 17 22 22 C 1.53531 * 107.57822 * 41.99527 * 21 20 18 23 23 O 1.35906 * 119.52121 * 179.60243 * 17 16 15 24 24 N 1.32578 * 120.02109 * 359.46419 * 13 12 11 25 25 H 0.97008 * 119.99955 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.00896 * 359.95778 * 10 9 7 27 27 H 1.08007 * 119.84681 * 180.28319 * 12 11 10 28 28 H 1.08001 * 119.91518 * 0.07930 * 15 14 13 29 29 H 1.07996 * 119.88008 * 180.02562 * 16 15 14 30 30 H 1.08004 * 120.10397 * 179.88045 * 19 18 17 31 31 H 0.96999 * 121.14601 * 166.19445 * 20 18 17 32 32 H 1.09000 * 109.83561 * 282.47884 * 21 20 18 33 33 H 1.09001 * 109.88897 * 161.54472 * 21 20 18 34 34 H 1.09009 * 109.58047 * 61.58133 * 22 21 20 35 35 H 1.08996 * 109.58050 * 181.97996 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6962 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0074 -1.2129 0.0005 8 1 3.0826 -1.2157 0.1032 9 6 1.3072 -2.4330 -0.1332 10 6 2.0147 -3.6439 -0.2651 11 7 1.3578 -4.7805 -0.3892 12 6 0.0360 -4.7905 -0.3850 13 6 -0.6792 -3.5930 -0.2600 14 6 -2.1612 -3.6115 -0.2617 15 6 -2.8758 -2.4141 -0.2370 16 6 -4.2549 -2.4300 -0.2381 17 6 -4.9401 -3.6373 -0.2632 18 6 -4.2287 -4.8360 -0.2906 19 6 -2.8457 -4.8265 -0.2883 20 7 -4.9220 -6.0567 -0.3212 21 6 -6.3618 -6.0346 -0.0114 22 6 -6.9688 -4.8125 -0.7152 23 8 -6.2992 -3.6363 -0.2556 24 7 -0.0310 -2.4433 -0.1345 25 1 -0.4850 0.8401 -0.0004 26 1 3.0947 -3.6412 -0.2649 27 1 -0.4948 -5.7261 -0.4825 28 1 -2.3479 -1.4721 -0.2179 29 1 -4.8037 -1.5000 -0.2193 30 1 -2.2976 -5.7569 -0.3076 31 1 -4.4683 -6.8861 -0.5384 32 1 -6.5072 -5.9512 1.0656 33 1 -6.8342 -6.9456 -0.3789 34 1 -6.8383 -4.9096 -1.7931 35 1 -8.0305 -4.7446 -0.4785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241468065.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:36 Heat of formation + Delta-G solvation = 37.070269 kcal Electronic energy + Delta-G solvation = -21095.554222 eV Core-core repulsion = 17865.544414 eV Total energy + Delta-G solvation = -3230.009808 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35511 -38.97793 -36.99084 -35.14105 -34.06456 -32.39517 -31.13300 -30.37913 -28.96970 -26.78329 -26.03562 -24.18688 -22.85206 -22.33800 -21.26875 -19.68053 -17.79332 -17.51787 -17.17321 -16.28190 -15.64412 -15.33751 -15.17076 -14.76321 -14.54617 -13.91267 -13.89254 -13.37935 -13.23801 -13.07989 -13.04092 -12.45787 -11.84465 -11.51520 -11.45017 -11.35987 -11.16529 -10.85489 -10.73954 -10.41725 -10.33201 -9.91229 -9.79100 -9.53571 -9.12257 -8.26658 -7.53611 -7.45870 -6.90402 -6.54488 -4.71142 1.48861 2.00064 2.67727 3.01991 3.02360 3.03930 3.18304 3.32314 3.59729 3.83596 4.33451 4.60099 4.71966 4.89989 4.97042 5.10971 5.29060 5.35215 5.62278 5.72826 5.77490 5.80604 6.01343 6.06504 6.26033 6.36099 6.39673 6.61110 6.70180 6.94842 6.95686 7.06784 7.19242 7.35201 7.43646 7.62891 7.72991 7.86808 8.01981 8.39321 8.63413 9.21464 9.79654 10.11140 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023814 B = 0.004549 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.483855 B = 6153.924144 C = 7291.328377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.068 3.932 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.414 4.414 8 H 0.090 0.910 9 C 0.209 3.791 10 C -0.064 4.064 11 N -0.431 5.431 12 C -0.108 4.108 13 C 0.141 3.859 14 C -0.007 4.007 15 C -0.089 4.089 16 C -0.118 4.118 17 C 0.050 3.950 18 C 0.125 3.875 19 C -0.139 4.139 20 N -0.761 5.761 21 C 0.091 3.909 22 C 0.045 3.955 23 O -0.317 6.317 24 N -0.441 5.441 25 H 0.278 0.722 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.155 0.845 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.403 0.597 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.815 -5.252 -0.899 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.159 4.159 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.445 4.445 8 H 0.108 0.892 9 C 0.082 3.918 10 C -0.234 4.234 11 N -0.142 5.142 12 C -0.267 4.267 13 C -0.006 4.006 14 C -0.010 4.010 15 C -0.109 4.109 16 C -0.137 4.137 17 C 0.002 3.998 18 C 0.026 3.974 19 C -0.163 4.163 20 N -0.399 5.399 21 C -0.035 4.035 22 C -0.032 4.032 23 O -0.231 6.231 24 N -0.159 5.159 25 H 0.089 0.911 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.173 0.827 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.239 0.761 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.297 -4.908 -0.794 13.264 hybrid contribution 0.533 0.018 -0.164 0.557 sum -11.765 -4.891 -0.957 12.777 Atomic orbital electron populations 1.70032 1.07381 1.28530 1.27152 1.26107 0.94986 1.01358 0.93443 0.86282 0.80074 0.79900 0.80053 1.18772 1.20051 1.18776 1.19593 0.94987 0.89201 1.40744 0.89151 1.19359 0.88792 0.93395 0.90233 1.23211 0.99272 0.89423 1.11455 1.67654 1.08855 1.30088 1.07628 1.22493 0.90619 0.97018 1.16558 1.20598 0.92508 0.91617 0.95891 1.18407 0.91255 0.92191 0.99105 1.21343 0.91769 0.99879 0.97891 1.20387 0.93900 0.95177 1.04277 1.18523 0.81516 0.92703 1.07020 1.17580 0.91365 0.85321 1.03092 1.20533 0.90889 0.98326 1.06517 1.44456 1.07676 1.06521 1.81216 1.22108 0.82391 0.99035 0.99988 1.23169 0.96707 0.84888 0.98454 1.85997 1.16649 1.38546 1.81941 1.69544 1.07961 1.23157 1.15204 0.91082 0.84912 0.85614 0.82721 0.85587 0.85632 0.76079 0.91732 0.89450 0.91964 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.69 11.51 55.55 0.64 -17.05 16 2 C 0.07 1.63 5.49 -17.34 -0.10 1.53 16 3 Si 0.91 17.64 29.56 -169.99 -5.03 12.61 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.41 -10.52 9.15 -37.74 -0.35 -10.87 16 8 H 0.09 2.11 7.86 -52.48 -0.41 1.69 16 9 C 0.21 5.60 6.54 -84.84 -0.56 5.05 16 10 C -0.06 -1.61 10.98 -16.54 -0.18 -1.79 16 11 N -0.43 -10.80 10.47 -12.04 -0.13 -10.93 16 12 C -0.11 -2.58 10.61 -16.72 -0.18 -2.76 16 13 C 0.14 3.46 6.73 -82.77 -0.56 2.90 16 14 C -0.01 -0.15 5.88 -104.88 -0.62 -0.77 16 15 C -0.09 -1.82 9.57 -39.24 -0.38 -2.20 16 16 C -0.12 -2.12 9.95 -39.47 -0.39 -2.51 16 17 C 0.05 0.85 6.52 -38.92 -0.25 0.60 16 18 C 0.13 2.05 6.50 -83.46 -0.54 1.50 16 19 C -0.14 -2.52 9.30 -39.09 -0.36 -2.88 16 20 N -0.76 -9.45 5.93 -57.63 -0.34 -9.79 16 21 C 0.09 0.87 7.36 -3.33 -0.02 0.85 16 22 C 0.04 0.47 7.18 37.43 0.27 0.73 16 23 O -0.32 -4.76 10.32 -19.44 -0.20 -4.96 16 24 N -0.44 -11.83 7.17 -7.51 -0.05 -11.89 16 25 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 26 H 0.13 3.01 8.06 -52.48 -0.42 2.59 16 27 H 0.13 2.61 6.22 -52.48 -0.33 2.28 16 28 H 0.16 3.47 7.55 -52.49 -0.40 3.08 16 29 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 30 H 0.13 2.07 6.22 -52.48 -0.33 1.74 16 31 H 0.40 4.20 8.90 -40.82 -0.36 3.84 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -30.23 301.75 -8.27 -38.50 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -3.50 Total: 9.58 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -4.21 Total: -10.61 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.12 Total: -49.66 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.20 Total: -4.96 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.23 -8.27 -38.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241468065.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.567 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds