Wall clock time and date at job start Tue Mar 31 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48503 * 109.46867 * 239.99899 * 3 2 1 5 5 H 1.48502 * 109.46815 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47116 * 120.00162 * 3 2 1 7 7 C 1.40042 * 119.99454 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99700 * 186.30267 * 7 2 1 9 9 C 1.41307 * 120.00269 * 6.30088 * 7 2 1 10 10 C 1.40861 * 120.14857 * 173.75577 * 9 7 2 11 11 N 1.31868 * 119.97558 * 179.97438 * 10 9 7 12 12 C 1.32189 * 120.28696 * 359.72147 * 11 10 9 13 13 C 1.40040 * 120.29722 * 0.53895 * 12 11 10 14 14 C 1.48210 * 119.99302 * 179.74567 * 13 12 11 15 15 C 1.39461 * 120.10925 * 184.74252 * 14 13 12 16 16 C 1.37921 * 120.16361 * 180.02562 * 15 14 13 17 17 C 1.38846 * 120.23193 * 0.02562 * 16 15 14 18 18 C 1.39415 * 119.74706 * 359.84507 * 17 16 15 19 19 C 1.38308 * 120.28629 * 0.22454 * 18 17 16 20 20 N 1.40420 * 119.73441 * 180.24349 * 18 17 16 21 21 C 1.47291 * 117.70721 * 346.16772 * 20 18 17 22 22 C 1.53531 * 107.57822 * 41.99527 * 21 20 18 23 23 O 1.35906 * 119.52121 * 179.60243 * 17 16 15 24 24 N 1.32578 * 120.02109 * 359.46419 * 13 12 11 25 25 H 0.97008 * 119.99955 * 0.02562 * 1 2 3 26 26 H 1.08007 * 120.00896 * 359.95778 * 10 9 7 27 27 H 1.08007 * 119.84681 * 180.28319 * 12 11 10 28 28 H 1.08001 * 119.91518 * 0.07930 * 15 14 13 29 29 H 1.07996 * 119.88008 * 180.02562 * 16 15 14 30 30 H 1.08004 * 120.10397 * 179.88045 * 19 18 17 31 31 H 0.96999 * 121.14601 * 166.19445 * 20 18 17 32 32 H 1.09000 * 109.83561 * 282.47884 * 21 20 18 33 33 H 1.09001 * 109.88897 * 161.54472 * 21 20 18 34 34 H 1.09009 * 109.58047 * 61.58133 * 22 21 20 35 35 H 1.08996 * 109.58050 * 181.97996 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6962 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0074 -1.2129 0.0005 8 1 3.0826 -1.2157 0.1032 9 6 1.3072 -2.4330 -0.1332 10 6 2.0147 -3.6439 -0.2651 11 7 1.3578 -4.7805 -0.3892 12 6 0.0360 -4.7905 -0.3850 13 6 -0.6792 -3.5930 -0.2600 14 6 -2.1612 -3.6115 -0.2617 15 6 -2.8758 -2.4141 -0.2370 16 6 -4.2549 -2.4300 -0.2381 17 6 -4.9401 -3.6373 -0.2632 18 6 -4.2287 -4.8360 -0.2906 19 6 -2.8457 -4.8265 -0.2883 20 7 -4.9220 -6.0567 -0.3212 21 6 -6.3618 -6.0346 -0.0114 22 6 -6.9688 -4.8125 -0.7152 23 8 -6.2992 -3.6363 -0.2556 24 7 -0.0310 -2.4433 -0.1345 25 1 -0.4850 0.8401 -0.0004 26 1 3.0947 -3.6412 -0.2649 27 1 -0.4948 -5.7261 -0.4825 28 1 -2.3479 -1.4721 -0.2179 29 1 -4.8037 -1.5000 -0.2193 30 1 -2.2976 -5.7569 -0.3076 31 1 -4.4683 -6.8861 -0.5384 32 1 -6.5072 -5.9512 1.0656 33 1 -6.8342 -6.9456 -0.3789 34 1 -6.8383 -4.9096 -1.7931 35 1 -8.0305 -4.7446 -0.4785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241468065.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:35 Heat of formation + Delta-G solvation = 16.848317 kcal Electronic energy + Delta-G solvation = -21096.431111 eV Core-core repulsion = 17865.544414 eV Total energy + Delta-G solvation = -3230.886698 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60140 -40.76448 -38.35908 -36.23755 -35.92134 -34.14340 -32.87271 -31.58549 -30.53438 -28.02267 -27.82909 -25.55044 -24.41527 -23.87442 -22.88409 -20.97812 -19.47908 -18.88300 -18.47066 -17.52562 -17.28106 -17.13335 -16.63603 -16.15752 -15.95159 -15.18422 -15.06339 -14.96245 -14.72711 -14.46640 -14.41213 -13.76576 -13.39887 -13.27387 -12.97271 -12.90556 -12.57134 -12.40476 -12.07694 -11.94864 -11.70631 -11.60252 -11.46233 -11.08998 -10.81291 -9.98476 -9.34273 -9.02717 -8.37194 -8.22270 -6.64751 -0.10047 0.58100 0.92845 1.25434 1.42883 1.55413 1.57743 2.20816 2.27039 2.54889 2.72015 3.02087 3.60799 3.73925 3.86963 3.90409 4.05974 4.18334 4.28335 4.30057 4.43909 4.56041 4.59277 4.61151 4.80144 4.86392 4.92437 5.03712 5.15390 5.19085 5.23672 5.38677 5.72697 5.80420 5.88725 6.06069 6.15724 6.50548 6.58391 6.72763 6.83702 7.29865 7.89840 8.32782 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023814 B = 0.004549 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.483855 B = 6153.924144 C = 7291.328377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.023 3.977 3 Si 0.994 3.006 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.439 4.439 8 H 0.103 0.897 9 C 0.177 3.823 10 C -0.087 4.087 11 N -0.438 5.438 12 C -0.118 4.118 13 C 0.132 3.868 14 C -0.038 4.038 15 C -0.106 4.106 16 C -0.121 4.121 17 C 0.056 3.944 18 C 0.134 3.866 19 C -0.137 4.137 20 N -0.753 5.753 21 C 0.087 3.913 22 C 0.033 3.967 23 O -0.328 6.328 24 N -0.470 5.470 25 H 0.285 0.715 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.126 0.874 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.415 0.585 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 -6.081 -1.006 15.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.201 4.201 3 Si 0.813 3.187 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.180 1.180 7 C -0.470 4.470 8 H 0.121 0.879 9 C 0.051 3.949 10 C -0.255 4.255 11 N -0.150 5.150 12 C -0.277 4.277 13 C -0.015 4.015 14 C -0.041 4.041 15 C -0.127 4.127 16 C -0.140 4.140 17 C 0.007 3.993 18 C 0.032 3.968 19 C -0.161 4.161 20 N -0.391 5.391 21 C -0.037 4.037 22 C -0.042 4.042 23 O -0.243 6.243 24 N -0.188 5.188 25 H 0.096 0.904 26 H 0.167 0.833 27 H 0.173 0.827 28 H 0.144 0.856 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.252 0.748 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.347 -5.795 -0.903 15.500 hybrid contribution 0.893 0.148 -0.137 0.916 sum -13.454 -5.647 -1.039 14.628 Atomic orbital electron populations 1.70139 1.09027 1.29957 1.26996 1.27080 0.95797 1.04732 0.92449 0.85077 0.78559 0.74804 0.80230 1.18247 1.19229 1.18003 1.20046 0.95858 0.89834 1.41245 0.87883 1.19843 0.89413 0.94595 0.91082 1.23427 1.00111 0.89309 1.12687 1.67672 1.09539 1.29994 1.07781 1.22951 0.90450 0.98095 1.16208 1.21170 0.94372 0.91342 0.94635 1.18408 0.89725 0.93818 1.02112 1.21091 0.92938 0.98647 1.00025 1.20435 0.92887 0.96633 1.04020 1.18552 0.82781 0.92414 1.05535 1.17602 0.90886 0.86888 1.01393 1.20576 0.91785 0.97530 1.06172 1.44621 1.08946 1.05459 1.80036 1.22394 0.80507 1.00635 1.00177 1.23631 0.98234 0.83564 0.98787 1.85989 1.15205 1.41215 1.81855 1.69555 1.08197 1.24542 1.16477 0.90388 0.83308 0.82697 0.85635 0.84184 0.84226 0.74760 0.91664 0.85131 0.91573 0.83688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.31 11.51 21.84 0.25 -38.05 16 2 C 0.02 1.14 5.49 85.29 0.47 1.61 16 3 Si 0.99 36.37 29.56 68.60 2.03 38.39 16 4 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 5 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 7 C -0.44 -23.04 9.15 23.46 0.21 -22.83 16 8 H 0.10 4.91 7.86 -2.91 -0.02 4.89 16 9 C 0.18 9.92 6.54 40.24 0.26 10.18 16 10 C -0.09 -4.53 10.98 85.33 0.94 -3.59 16 11 N -0.44 -22.46 10.47 -192.01 -2.01 -24.47 16 12 C -0.12 -5.75 10.61 85.08 0.90 -4.84 16 13 C 0.13 6.73 6.73 42.12 0.28 7.02 16 14 C -0.04 -1.68 5.88 -20.03 -0.12 -1.80 16 15 C -0.11 -4.57 9.57 22.49 0.22 -4.35 16 16 C -0.12 -4.35 9.95 22.34 0.22 -4.13 16 17 C 0.06 1.82 6.52 22.70 0.15 1.97 16 18 C 0.13 4.11 6.50 38.06 0.25 4.35 16 19 C -0.14 -4.86 9.30 22.59 0.21 -4.65 16 20 N -0.75 -16.05 5.93 -336.23 -1.99 -18.05 16 21 C 0.09 1.28 7.36 86.41 0.64 1.91 16 22 C 0.03 0.56 7.18 72.16 0.52 1.07 16 23 O -0.33 -8.97 10.32 -92.49 -0.95 -9.93 16 24 N -0.47 -26.49 7.17 -177.69 -1.27 -27.76 16 25 H 0.29 13.28 8.29 -92.70 -0.77 12.51 16 26 H 0.15 6.99 8.06 -2.91 -0.02 6.96 16 27 H 0.16 6.36 6.22 -2.91 -0.02 6.34 16 28 H 0.13 6.08 7.55 -2.91 -0.02 6.06 16 29 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 30 H 0.14 4.41 6.22 -2.91 -0.02 4.39 16 31 H 0.41 7.08 8.90 -92.71 -0.83 6.26 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -68.75 301.75 1.52 -67.24 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.32 Total: 30.71 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 5.15 Total: -18.08 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -5.03 Total: -108.34 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.95 Total: -9.93 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.39 kcal Total: -68.75 1.52 -67.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241468065.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.087 kcal (2) G-P(sol) polarization free energy of solvation -68.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds