Wall clock time and date at job start Tue Mar 31 2020 05:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30705 * 1 3 3 Si 1.86795 * 120.00256 * 2 1 4 4 H 1.48494 * 109.47544 * 240.00479 * 3 2 1 5 5 H 1.48506 * 109.46953 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47359 * 119.99819 * 3 2 1 7 7 C 1.40143 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99974 * 179.97438 * 7 2 1 9 9 C 1.40720 * 120.00278 * 0.02562 * 7 2 1 10 10 N 1.33988 * 120.29179 * 10.25938 * 9 7 2 11 11 C 1.31602 * 119.90703 * 180.02562 * 10 9 7 12 12 C 1.39211 * 120.51643 * 0.02562 * 11 10 9 13 13 N 1.31980 * 120.60361 * 359.97438 * 12 11 10 14 14 C 1.32933 * 120.07359 * 359.97438 * 13 12 11 15 15 C 1.47631 * 120.25432 * 179.97438 * 14 13 12 16 16 C 1.39827 * 120.13398 * 43.83958 * 15 14 13 17 17 C 1.37757 * 120.13882 * 179.81998 * 16 15 14 18 18 C 1.38994 * 120.26353 * 0.52215 * 17 16 15 19 19 C 1.39587 * 119.78481 * 359.62166 * 18 17 16 20 20 C 1.38155 * 120.30809 * 0.16663 * 19 18 17 21 21 N 1.40392 * 119.72246 * 180.36542 * 19 18 17 22 22 C 1.47283 * 117.69854 * 346.15899 * 21 19 18 23 23 C 1.53530 * 107.58176 * 42.01897 * 22 21 19 24 24 O 1.35841 * 119.50525 * 179.50575 * 18 17 16 25 25 H 0.96996 * 119.99541 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.74496 * 180.28032 * 11 10 9 27 27 H 1.08007 * 119.69963 * 180.02562 * 12 11 10 28 28 H 1.07998 * 119.92717 * 0.06048 * 16 15 14 29 29 H 1.08001 * 119.86932 * 180.25878 * 17 16 15 30 30 H 1.08006 * 120.11726 * 179.87835 * 20 19 18 31 31 H 0.97005 * 121.15278 * 166.12936 * 21 19 18 32 32 H 1.09004 * 109.83541 * 282.50846 * 22 21 19 33 33 H 1.09000 * 109.89845 * 161.57659 * 22 21 19 34 34 H 1.08999 * 109.57924 * 181.94193 * 23 22 21 35 35 H 1.09004 * 109.57468 * 61.54547 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 3.0948 1.6964 -1.2125 5 1 1.2761 2.7464 0.0006 6 1 3.0948 1.6964 1.2125 7 6 2.0077 -1.2137 -0.0005 8 1 3.0878 -1.2137 -0.0010 9 6 1.3042 -2.4324 -0.0016 10 7 -0.0196 -2.4484 -0.2082 11 6 -0.6701 -3.5924 -0.2072 12 6 0.0063 -4.7900 0.0078 13 7 1.3100 -4.7978 0.2134 14 6 1.9908 -3.6560 0.2162 15 6 3.4490 -3.6601 0.4464 16 6 4.2577 -4.6061 -0.1912 17 6 5.6189 -4.6076 0.0206 18 6 6.1956 -3.6769 0.8768 19 6 5.3917 -2.7326 1.5175 20 6 4.0264 -2.7216 1.3071 21 7 5.9767 -1.7883 2.3761 22 6 7.3651 -2.0230 2.8079 23 6 8.1548 -2.5113 1.5851 24 8 7.5383 -3.6988 1.0822 25 1 -0.4849 0.8400 -0.0004 26 1 -1.7363 -3.6026 -0.3784 27 1 -0.5406 -5.7213 0.0055 28 1 3.8146 -5.3345 -0.8540 29 1 6.2398 -5.3376 -0.4773 30 1 3.4070 -1.9908 1.8061 31 1 5.4836 -1.0079 2.6742 32 1 7.3860 -2.7829 3.5891 33 1 7.7990 -1.0958 3.1823 34 1 9.1823 -2.7286 1.8768 35 1 8.1470 -1.7410 0.8139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241470181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:40 Heat of formation + Delta-G solvation = 38.332728 kcal Electronic energy + Delta-G solvation = -21572.253069 eV Core-core repulsion = 18342.298005 eV Total energy + Delta-G solvation = -3229.955064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.18896 -38.98932 -36.80591 -34.97404 -34.17676 -32.29439 -31.24696 -30.29882 -28.66843 -26.89735 -25.96160 -24.13113 -22.47008 -22.23684 -21.45268 -19.60508 -17.77394 -17.47593 -17.02096 -16.35496 -15.88665 -15.02494 -14.96936 -14.88989 -14.25272 -13.90215 -13.75615 -13.40278 -13.15708 -12.97763 -12.78454 -12.44324 -12.15890 -11.56037 -11.46288 -11.35809 -11.03489 -10.93432 -10.60902 -10.23969 -10.20539 -9.86892 -9.65149 -9.56797 -9.15743 -8.11175 -7.57268 -7.39076 -6.86235 -6.60376 -4.73052 1.80645 2.15015 2.56116 2.93568 2.94659 2.96650 3.15579 3.48270 3.74848 3.76530 4.46831 4.59015 4.74885 5.05297 5.10820 5.29318 5.44227 5.49522 5.66375 5.75534 5.94268 5.97802 6.04254 6.16816 6.25081 6.42199 6.57396 6.59966 6.80266 6.90284 6.98935 7.02872 7.31259 7.42344 7.52147 7.64954 7.90821 7.99278 8.04740 8.32137 8.58545 9.19149 9.76666 10.01546 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014770 B = 0.006997 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.341278 B = 4000.964283 C = 5580.607696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.066 3.934 3 Si 0.910 3.090 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.405 4.405 8 H 0.100 0.900 9 C 0.223 3.777 10 N -0.455 5.455 11 C 0.086 3.914 12 C -0.117 4.117 13 N -0.411 5.411 14 C -0.025 4.025 15 C 0.039 3.961 16 C -0.120 4.120 17 C -0.113 4.113 18 C 0.035 3.965 19 C 0.132 3.868 20 C -0.134 4.134 21 N -0.761 5.761 22 C 0.091 3.909 23 C 0.045 3.955 24 O -0.319 6.319 25 H 0.279 0.721 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.405 0.595 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.594 0.713 3.322 11.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.162 4.162 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.436 4.436 8 H 0.118 0.882 9 C 0.098 3.902 10 N -0.171 5.171 11 C -0.085 4.085 12 C -0.278 4.278 13 N -0.123 5.123 14 C -0.172 4.172 15 C 0.036 3.964 16 C -0.141 4.141 17 C -0.132 4.132 18 C -0.013 4.013 19 C 0.033 3.967 20 C -0.157 4.157 21 N -0.398 5.398 22 C -0.035 4.035 23 C -0.032 4.032 24 O -0.234 6.234 25 H 0.091 0.909 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.153 0.847 31 H 0.241 0.759 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.651 0.682 3.318 11.177 hybrid contribution -0.110 1.256 0.206 1.278 sum 10.541 1.938 3.524 11.282 Atomic orbital electron populations 1.70036 1.07459 1.28797 1.26416 1.26212 0.94959 1.01513 0.93491 0.86323 0.80173 0.79884 0.80311 1.18519 1.19956 1.18610 1.19829 0.95295 0.88946 1.39491 0.88176 1.19224 0.88902 0.92371 0.89699 1.69518 1.07629 1.24677 1.15262 1.23530 0.99877 0.90386 0.94689 1.22569 0.91369 0.97924 1.15944 1.67720 1.08179 1.29378 1.07063 1.20117 0.92636 0.90363 1.14089 1.18038 0.90941 0.93382 0.93992 1.20869 0.91664 0.99826 1.01750 1.20162 0.94769 0.99670 0.98574 1.18444 0.81365 1.00531 1.00941 1.17672 0.92048 0.92900 0.94074 1.20753 0.91329 1.01913 1.01693 1.44500 1.13529 1.26931 1.54839 1.22091 0.83365 1.01522 0.96525 1.23137 0.96506 0.87574 0.95935 1.85945 1.19135 1.36112 1.82167 0.90919 0.85256 0.85431 0.85985 0.86048 0.84683 0.75931 0.91873 0.89588 0.87622 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.78 11.54 55.56 0.64 -17.13 16 2 C 0.07 1.57 5.49 -17.32 -0.10 1.47 16 3 Si 0.91 17.46 29.56 -169.99 -5.02 12.44 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 7 C -0.41 -10.19 7.44 -37.93 -0.28 -10.47 16 8 H 0.10 2.39 5.37 -52.49 -0.28 2.11 16 9 C 0.22 5.93 6.51 -84.55 -0.55 5.38 16 10 N -0.45 -12.19 8.12 -10.72 -0.09 -12.27 16 11 C 0.09 2.03 11.22 -17.29 -0.19 1.84 16 12 C -0.12 -2.68 11.22 -17.13 -0.19 -2.87 16 13 N -0.41 -10.18 10.30 -8.99 -0.09 -10.27 16 14 C -0.03 -0.64 6.42 -82.12 -0.53 -1.17 16 15 C 0.04 0.87 5.29 -104.88 -0.55 0.31 16 16 C -0.12 -2.43 9.66 -39.16 -0.38 -2.81 16 17 C -0.11 -2.04 9.95 -39.48 -0.39 -2.43 16 18 C 0.03 0.63 6.53 -38.80 -0.25 0.37 16 19 C 0.13 2.41 6.49 -83.46 -0.54 1.86 16 20 C -0.13 -2.75 7.41 -39.02 -0.29 -3.04 16 21 N -0.76 -11.11 5.93 -57.63 -0.34 -11.45 16 22 C 0.09 1.01 7.36 -3.34 -0.02 0.99 16 23 C 0.05 0.53 7.18 37.43 0.27 0.80 16 24 O -0.32 -5.10 10.32 -19.24 -0.20 -5.29 16 25 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 26 H 0.13 2.60 8.06 -52.49 -0.42 2.18 16 27 H 0.13 2.50 8.06 -52.48 -0.42 2.08 16 28 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 29 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.14 2.85 6.73 -52.48 -0.35 2.50 16 31 H 0.40 5.39 8.90 -40.82 -0.36 5.03 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 299.33 15.07 4.51 4.51 Total: -1.00 -30.26 299.33 -8.11 -38.37 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -3.51 Total: 10.87 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -4.01 Total: -9.76 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.12 Total: -51.13 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.20 Total: -5.29 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.02 Total: 12.44 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.26 -8.11 -38.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241470181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.704 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds