Wall clock time and date at job start Tue Mar 31 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86805 * 119.99751 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00136 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99962 * 3 2 1 7 7 C 1.40100 * 120.00378 * 180.27366 * 2 1 3 8 8 H 1.08001 * 120.00528 * 179.97438 * 7 2 1 9 9 C 1.40979 * 119.99707 * 0.02562 * 7 2 1 10 10 N 1.33690 * 119.12627 * 359.72762 * 9 7 2 11 11 C 1.31554 * 120.82800 * 179.71975 * 10 9 7 12 12 C 1.40508 * 119.09189 * 0.54102 * 11 10 9 13 13 C 1.47788 * 120.79282 * 179.70895 * 12 11 10 14 14 C 1.39813 * 120.11992 * 180.02562 * 13 12 11 15 15 C 1.37780 * 120.14071 * 180.02562 * 14 13 12 16 16 C 1.38996 * 120.25602 * 359.95833 * 15 14 13 17 17 C 1.39607 * 119.77219 * 359.93036 * 16 15 14 18 18 C 1.38171 * 120.30776 * 359.89914 * 17 16 15 19 19 N 1.40366 * 119.72342 * 180.25337 * 17 16 15 20 20 C 1.47290 * 117.69759 * 346.21792 * 19 17 16 21 21 C 1.53526 * 107.58614 * 42.01129 * 20 19 17 22 22 O 1.35849 * 119.51196 * 179.78587 * 16 15 14 23 23 C 1.40515 * 118.41151 * 359.73288 * 12 11 10 24 24 N 1.31551 * 119.08153 * 359.97438 * 23 12 11 25 25 H 0.97005 * 120.00035 * 359.72380 * 1 2 3 26 26 H 1.08005 * 120.44853 * 180.27981 * 11 10 9 27 27 H 1.08001 * 119.92710 * 0.07196 * 14 13 12 28 28 H 1.08008 * 119.87092 * 179.97438 * 15 14 13 29 29 H 1.07997 * 120.11813 * 180.15300 * 18 17 16 30 30 H 0.97003 * 121.15542 * 166.23884 * 19 17 16 31 31 H 1.08998 * 109.83549 * 282.48935 * 20 19 17 32 32 H 1.09003 * 109.88779 * 161.55841 * 20 19 17 33 33 H 1.08993 * 109.58744 * 181.92589 * 21 20 19 34 34 H 1.09000 * 109.58064 * 61.52106 * 21 20 19 35 35 H 1.07994 * 120.45973 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 1.2758 2.7465 0.0006 5 1 3.0946 1.6965 1.2125 6 1 3.0945 1.6965 -1.2125 7 6 2.0074 -1.2132 -0.0058 8 1 3.0874 -1.2133 -0.0062 9 6 1.3025 -2.4341 -0.0122 10 7 -0.0342 -2.4138 -0.0070 11 6 -0.7255 -3.5330 -0.0182 12 6 -0.0399 -4.7595 -0.0242 13 6 -0.7789 -6.0393 -0.0303 14 6 -0.0824 -7.2516 -0.0357 15 6 -0.7709 -8.4450 -0.0419 16 6 -2.1608 -8.4517 -0.0421 17 6 -2.8599 -7.2433 -0.0344 18 6 -2.1765 -6.0424 -0.0246 19 7 -4.2635 -7.2512 -0.0292 20 6 -4.9421 -8.5203 -0.3427 21 6 -4.1858 -9.6423 0.3829 22 8 -2.8244 -9.6371 -0.0527 23 6 1.3651 -4.7400 -0.0237 24 7 1.9885 -3.5816 -0.0182 25 1 -0.4850 0.8401 0.0040 26 1 -1.8053 -3.5094 -0.0185 27 1 0.9976 -7.2525 -0.0342 28 1 -0.2284 -9.3790 -0.0465 29 1 -2.7203 -5.1094 -0.0161 30 1 -4.7692 -6.4486 0.1735 31 1 -4.9207 -8.6954 -1.4183 32 1 -5.9743 -8.4848 0.0057 33 1 -4.6417 -10.6033 0.1451 34 1 -4.2256 -9.4731 1.4589 35 1 1.9254 -5.6632 -0.0286 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241481595.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:53 Heat of formation + Delta-G solvation = 39.669974 kcal Electronic energy + Delta-G solvation = -20732.730655 eV Core-core repulsion = 17502.833579 eV Total energy + Delta-G solvation = -3229.897076 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.31519 -38.98757 -37.01977 -35.15818 -33.97917 -32.03346 -31.68515 -30.34190 -29.02083 -27.19541 -25.75710 -24.00326 -23.20156 -22.18267 -21.26287 -19.76059 -18.08799 -17.66372 -17.18946 -16.34546 -15.90161 -15.26186 -15.11841 -14.70155 -14.44946 -13.90191 -13.85151 -13.36656 -13.20064 -13.05653 -12.75469 -12.56830 -12.23736 -11.85455 -11.48194 -11.37988 -11.20061 -10.89067 -10.82286 -10.43207 -10.41286 -9.92865 -9.56217 -9.23349 -9.20910 -8.58780 -7.53008 -7.40851 -6.91991 -6.68677 -4.80397 1.55634 1.93885 2.71397 2.95071 2.97012 2.99938 3.08193 3.34089 3.61816 3.76448 4.29430 4.60181 4.65655 4.90793 4.97364 5.12118 5.29655 5.54959 5.62396 5.68690 5.72012 5.80410 5.84845 5.92704 6.00103 6.23463 6.31365 6.52611 6.70717 6.73683 6.87049 7.03764 7.11715 7.25103 7.49280 7.57247 7.74016 7.88601 8.00932 8.34887 8.42821 9.00320 9.95558 10.15246 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.040107 B = 0.003463 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.970333 B = 8083.339006 C = 8746.630610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.060 3.940 3 Si 0.923 3.077 4 H -0.275 1.275 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.377 4.377 8 H 0.096 0.904 9 C 0.380 3.620 10 N -0.509 5.509 11 C 0.181 3.819 12 C -0.326 4.326 13 C 0.051 3.949 14 C -0.159 4.159 15 C -0.093 4.093 16 C 0.014 3.986 17 C 0.150 3.850 18 C -0.180 4.180 19 N -0.761 5.761 20 C 0.090 3.910 21 C 0.046 3.954 22 O -0.319 6.319 23 C 0.188 3.812 24 N -0.594 5.594 25 H 0.279 0.721 26 H 0.130 0.870 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.404 0.596 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.787 -11.066 0.451 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.168 4.168 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.410 4.410 8 H 0.114 0.886 9 C 0.147 3.853 10 N -0.225 5.225 11 C 0.004 3.996 12 C -0.336 4.336 13 C 0.049 3.951 14 C -0.179 4.179 15 C -0.112 4.112 16 C -0.034 4.034 17 C 0.051 3.949 18 C -0.202 4.202 19 N -0.397 5.397 20 C -0.036 4.036 21 C -0.031 4.031 22 O -0.234 6.234 23 C 0.013 3.987 24 N -0.312 5.312 25 H 0.091 0.909 26 H 0.147 0.853 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.239 0.761 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.372 -10.192 0.361 13.195 hybrid contribution -0.794 0.217 0.139 0.835 sum -9.167 -9.975 0.500 13.557 Atomic orbital electron populations 1.70128 1.07467 1.28753 1.25383 1.26226 0.95133 1.01764 0.93710 0.86120 0.79922 0.79036 0.80327 1.19927 1.18534 1.18517 1.19448 0.95113 0.87888 1.38544 0.88569 1.19945 0.85987 0.90878 0.88471 1.69354 1.08080 1.26792 1.18263 1.23050 0.98978 0.87984 0.89565 1.19719 0.95189 0.93093 1.25603 1.18420 0.91349 0.92235 0.93121 1.20785 0.99476 0.90738 1.06936 1.20179 0.90256 0.98429 1.02335 1.18365 0.91340 0.82721 1.10942 1.17692 0.83450 0.93228 1.00541 1.20444 0.93792 0.95329 1.10667 1.44537 1.02620 1.11559 1.80998 1.22119 0.96606 0.84996 0.99890 1.23125 0.81766 0.99727 0.98479 1.85954 1.25012 1.29292 1.83103 1.22723 0.90535 0.95829 0.89586 1.68656 1.40782 0.98470 1.23276 0.90932 0.85298 0.85896 0.86011 0.86114 0.76051 0.91740 0.89512 0.87542 0.92139 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.68 11.40 55.55 0.63 -17.05 16 2 C 0.06 1.47 5.50 -17.34 -0.10 1.37 16 3 Si 0.92 17.76 29.56 -169.99 -5.02 12.74 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.38 -10.03 9.34 -37.85 -0.35 -10.38 16 8 H 0.10 2.43 7.85 -52.49 -0.41 2.02 16 9 C 0.38 10.54 7.35 -158.13 -1.16 9.38 16 10 N -0.51 -13.83 7.82 -12.40 -0.10 -13.92 16 11 C 0.18 4.31 10.70 -16.82 -0.18 4.13 16 12 C -0.33 -7.22 5.94 -104.28 -0.62 -7.84 16 13 C 0.05 0.98 5.88 -104.84 -0.62 0.37 16 14 C -0.16 -2.73 9.44 -39.16 -0.37 -3.10 16 15 C -0.09 -1.48 9.95 -39.47 -0.39 -1.87 16 16 C 0.01 0.22 6.53 -38.79 -0.25 -0.03 16 17 C 0.15 2.40 6.50 -83.46 -0.54 1.86 16 18 C -0.18 -3.14 9.32 -39.04 -0.36 -3.50 16 19 N -0.76 -9.47 5.93 -57.63 -0.34 -9.82 16 20 C 0.09 0.86 7.36 -3.34 -0.02 0.84 16 21 C 0.05 0.47 7.18 37.43 0.27 0.74 16 22 O -0.32 -4.64 10.32 -19.27 -0.20 -4.84 16 23 C 0.19 4.30 10.70 -16.81 -0.18 4.12 16 24 N -0.59 -15.55 10.33 -12.40 -0.13 -15.67 16 25 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 26 H 0.13 2.70 6.33 -52.48 -0.33 2.37 16 27 H 0.12 1.92 6.28 -52.49 -0.33 1.59 16 28 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.12 2.00 6.29 -52.49 -0.33 1.67 16 30 H 0.40 4.32 8.90 -40.82 -0.36 3.95 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.13 2.56 6.33 -52.49 -0.33 2.23 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -30.94 299.26 -8.88 -39.82 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -3.35 Total: 8.15 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -4.89 Total: -3.92 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.07 Total: -56.46 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.20 Total: -4.84 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.02 Total: 12.74 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.94 -8.88 -39.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241481595.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.493 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds