Wall clock time and date at job start Tue Mar 31 2020 05:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86805 * 119.99751 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00136 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99962 * 3 2 1 7 7 C 1.40100 * 120.00378 * 180.27366 * 2 1 3 8 8 H 1.08001 * 120.00528 * 179.97438 * 7 2 1 9 9 C 1.40979 * 119.99707 * 0.02562 * 7 2 1 10 10 N 1.33690 * 119.12627 * 359.72762 * 9 7 2 11 11 C 1.31554 * 120.82800 * 179.71975 * 10 9 7 12 12 C 1.40508 * 119.09189 * 0.54102 * 11 10 9 13 13 C 1.47788 * 120.79282 * 179.70895 * 12 11 10 14 14 C 1.39813 * 120.11992 * 180.02562 * 13 12 11 15 15 C 1.37780 * 120.14071 * 180.02562 * 14 13 12 16 16 C 1.38996 * 120.25602 * 359.95833 * 15 14 13 17 17 C 1.39607 * 119.77219 * 359.93036 * 16 15 14 18 18 C 1.38171 * 120.30776 * 359.89914 * 17 16 15 19 19 N 1.40366 * 119.72342 * 180.25337 * 17 16 15 20 20 C 1.47290 * 117.69759 * 346.21792 * 19 17 16 21 21 C 1.53526 * 107.58614 * 42.01129 * 20 19 17 22 22 O 1.35849 * 119.51196 * 179.78587 * 16 15 14 23 23 C 1.40515 * 118.41151 * 359.73288 * 12 11 10 24 24 N 1.31551 * 119.08153 * 359.97438 * 23 12 11 25 25 H 0.97005 * 120.00035 * 359.72380 * 1 2 3 26 26 H 1.08005 * 120.44853 * 180.27981 * 11 10 9 27 27 H 1.08001 * 119.92710 * 0.07196 * 14 13 12 28 28 H 1.08008 * 119.87092 * 179.97438 * 15 14 13 29 29 H 1.07997 * 120.11813 * 180.15300 * 18 17 16 30 30 H 0.97003 * 121.15542 * 166.23884 * 19 17 16 31 31 H 1.08998 * 109.83549 * 282.48935 * 20 19 17 32 32 H 1.09003 * 109.88779 * 161.55841 * 20 19 17 33 33 H 1.08993 * 109.58744 * 181.92589 * 21 20 19 34 34 H 1.09000 * 109.58064 * 61.52106 * 21 20 19 35 35 H 1.07994 * 120.45973 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 1.2758 2.7465 0.0006 5 1 3.0946 1.6965 1.2125 6 1 3.0945 1.6965 -1.2125 7 6 2.0074 -1.2132 -0.0058 8 1 3.0874 -1.2133 -0.0062 9 6 1.3025 -2.4341 -0.0122 10 7 -0.0342 -2.4138 -0.0070 11 6 -0.7255 -3.5330 -0.0182 12 6 -0.0399 -4.7595 -0.0242 13 6 -0.7789 -6.0393 -0.0303 14 6 -0.0824 -7.2516 -0.0357 15 6 -0.7709 -8.4450 -0.0419 16 6 -2.1608 -8.4517 -0.0421 17 6 -2.8599 -7.2433 -0.0344 18 6 -2.1765 -6.0424 -0.0246 19 7 -4.2635 -7.2512 -0.0292 20 6 -4.9421 -8.5203 -0.3427 21 6 -4.1858 -9.6423 0.3829 22 8 -2.8244 -9.6371 -0.0527 23 6 1.3651 -4.7400 -0.0237 24 7 1.9885 -3.5816 -0.0182 25 1 -0.4850 0.8401 0.0040 26 1 -1.8053 -3.5094 -0.0185 27 1 0.9976 -7.2525 -0.0342 28 1 -0.2284 -9.3790 -0.0465 29 1 -2.7203 -5.1094 -0.0161 30 1 -4.7692 -6.4486 0.1735 31 1 -4.9207 -8.6954 -1.4183 32 1 -5.9743 -8.4848 0.0057 33 1 -4.6417 -10.6033 0.1451 34 1 -4.2256 -9.4731 1.4589 35 1 1.9254 -5.6632 -0.0286 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241481595.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:53 Heat of formation + Delta-G solvation = 19.432419 kcal Electronic energy + Delta-G solvation = -20733.608221 eV Core-core repulsion = 17502.833579 eV Total energy + Delta-G solvation = -3230.774643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50812 -40.75871 -38.32865 -36.23196 -35.74671 -33.88544 -33.26062 -31.51616 -30.57169 -28.54799 -27.25273 -25.34144 -24.74971 -23.72708 -22.76827 -21.00776 -19.84194 -18.87829 -18.45959 -17.71367 -17.36542 -16.95519 -16.39295 -16.07863 -15.77678 -15.11179 -15.00299 -14.97153 -14.52119 -14.44953 -14.30188 -13.97301 -13.72072 -13.14524 -13.10966 -12.92321 -12.68160 -12.39756 -12.02678 -11.96240 -11.64357 -11.31577 -11.15767 -11.06390 -10.93760 -10.15380 -9.30335 -8.94399 -8.49461 -8.20952 -6.70585 0.02417 0.64344 1.02897 1.16076 1.39708 1.54184 1.56594 2.17942 2.32692 2.61541 2.68000 3.09826 3.74271 3.87422 3.92285 3.93457 4.01666 4.16850 4.19737 4.30384 4.37498 4.45724 4.55175 4.56276 4.75003 4.84709 4.92625 5.02573 5.19256 5.25285 5.31673 5.43053 5.70642 5.89019 5.95792 6.08558 6.14183 6.46568 6.54463 6.66632 6.81971 7.13611 8.15629 8.29407 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.040107 B = 0.003463 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.970333 B = 8083.339006 C = 8746.630610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.020 3.980 3 Si 1.003 2.997 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.420 4.420 8 H 0.094 0.906 9 C 0.351 3.649 10 N -0.539 5.539 11 C 0.161 3.839 12 C -0.308 4.308 13 C 0.019 3.981 14 C -0.157 4.157 15 C -0.098 4.098 16 C 0.018 3.982 17 C 0.146 3.854 18 C -0.183 4.183 19 N -0.758 5.758 20 C 0.086 3.914 21 C 0.036 3.964 22 O -0.330 6.330 23 C 0.173 3.827 24 N -0.619 5.619 25 H 0.288 0.712 26 H 0.150 0.850 27 H 0.135 0.865 28 H 0.145 0.855 29 H 0.122 0.878 30 H 0.411 0.589 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.143 0.857 34 H 0.062 0.938 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.320 -12.839 0.494 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.204 4.204 3 Si 0.821 3.179 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.453 4.453 8 H 0.112 0.888 9 C 0.117 3.883 10 N -0.256 5.256 11 C -0.014 4.014 12 C -0.318 4.318 13 C 0.016 3.984 14 C -0.177 4.177 15 C -0.117 4.117 16 C -0.030 4.030 17 C 0.044 3.956 18 C -0.206 4.206 19 N -0.394 5.394 20 C -0.038 4.038 21 C -0.039 4.039 22 O -0.245 6.245 23 C 0.000 4.000 24 N -0.338 5.338 25 H 0.099 0.901 26 H 0.167 0.833 27 H 0.152 0.848 28 H 0.163 0.837 29 H 0.140 0.860 30 H 0.248 0.752 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.977 -12.045 0.405 15.646 hybrid contribution -0.580 0.341 0.128 0.685 sum -10.556 -11.704 0.533 15.771 Atomic orbital electron populations 1.70189 1.09056 1.30205 1.26246 1.27168 0.95962 1.04859 0.92451 0.84954 0.78500 0.74070 0.80350 1.18437 1.18061 1.18086 1.19752 0.95300 0.89022 1.41268 0.88788 1.20359 0.86639 0.91861 0.89446 1.69315 1.08182 1.28373 1.19746 1.23483 1.00015 0.88171 0.89719 1.19989 0.95181 0.94059 1.22534 1.18365 0.92115 0.91455 0.96418 1.20917 1.00158 0.90452 1.06205 1.20435 0.90606 0.98861 1.01772 1.18605 0.91808 0.83455 1.09163 1.17752 0.85261 0.92600 0.99952 1.20507 0.93379 0.96236 1.10436 1.44709 1.01353 1.13241 1.80102 1.22379 0.98250 0.83220 0.99971 1.23535 0.79760 1.01953 0.98681 1.85946 1.27214 1.28311 1.83034 1.23307 0.91412 0.96130 0.89145 1.68670 1.41402 0.99141 1.24569 0.90118 0.83312 0.84774 0.83694 0.85993 0.75156 0.91783 0.85607 0.83911 0.91934 0.81575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.63 11.40 21.85 0.25 -38.38 16 2 C 0.02 1.02 5.50 85.32 0.47 1.49 16 3 Si 1.00 37.05 29.56 68.60 2.03 39.08 16 4 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 5 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.42 -23.42 9.34 23.39 0.22 -23.20 16 8 H 0.09 5.02 7.85 -2.91 -0.02 5.00 16 9 C 0.35 20.43 7.35 134.85 0.99 21.43 16 10 N -0.54 -30.61 7.82 -193.16 -1.51 -32.12 16 11 C 0.16 7.89 10.70 85.29 0.91 8.81 16 12 C -0.31 -13.86 5.94 -19.64 -0.12 -13.98 16 13 C 0.02 0.71 5.88 -20.00 -0.12 0.60 16 14 C -0.16 -5.16 9.44 22.54 0.21 -4.95 16 15 C -0.10 -2.89 9.95 22.34 0.22 -2.67 16 16 C 0.02 0.53 6.53 22.78 0.15 0.68 16 17 C 0.15 4.35 6.50 38.09 0.25 4.60 16 18 C -0.18 -6.22 9.32 22.62 0.21 -6.01 16 19 N -0.76 -16.73 5.93 -336.24 -1.99 -18.73 16 20 C 0.09 1.31 7.36 86.41 0.64 1.95 16 21 C 0.04 0.60 7.18 72.16 0.52 1.12 16 22 O -0.33 -8.52 10.32 -91.86 -0.95 -9.47 16 23 C 0.17 8.05 10.70 85.29 0.91 8.96 16 24 N -0.62 -33.64 10.33 -193.16 -2.00 -35.64 16 25 H 0.29 13.39 8.29 -92.70 -0.77 12.62 16 26 H 0.15 6.41 6.33 -2.91 -0.02 6.39 16 27 H 0.13 3.97 6.28 -2.91 -0.02 3.95 16 28 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 29 H 0.12 4.00 6.29 -2.91 -0.02 3.98 16 30 H 0.41 7.74 8.90 -92.71 -0.83 6.92 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.17 6.34 6.33 -2.91 -0.02 6.32 16 Total: -1.00 -70.22 299.26 1.62 -68.59 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.33 Total: 27.84 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 5.47 Total: -1.19 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -5.25 Total: -124.86 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.95 Total: -9.47 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Total: -70.22 1.62 -68.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241481595.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.025 kcal (2) G-P(sol) polarization free energy of solvation -70.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds