Wall clock time and date at job start Tue Mar 31 2020 05:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86795 * 120.00024 * 2 1 4 4 H 1.48495 * 109.47362 * 270.00270 * 3 2 1 5 5 H 1.48501 * 109.46934 * 30.00291 * 3 2 1 6 6 H 1.48503 * 109.47160 * 150.00120 * 3 2 1 7 7 C 1.38669 * 119.99728 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99839 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00391 * 359.97438 * 7 2 1 10 10 C 1.35618 * 117.00286 * 185.20718 * 9 7 2 11 11 C 1.38787 * 120.14380 * 6.04922 * 10 9 7 12 12 C 1.38078 * 120.05617 * 180.30391 * 11 10 9 13 13 C 1.38484 * 120.34185 * 359.72176 * 12 11 10 14 14 C 1.37958 * 120.28064 * 359.97438 * 13 12 11 15 15 C 1.39374 * 119.94385 * 0.02562 * 14 13 12 16 16 C 1.48137 * 120.16888 * 180.02562 * 15 14 13 17 17 N 1.33390 * 120.68832 * 131.56567 * 16 15 14 18 18 C 1.31652 * 120.66811 * 180.25012 * 17 16 15 19 19 N 1.31936 * 122.03987 * 359.47604 * 18 17 16 20 20 C 1.32253 * 120.88218 * 0.26975 * 19 18 17 21 21 C 1.38384 * 119.15353 * 359.97438 * 20 19 18 22 22 C 1.50844 * 108.44592 * 180.02562 * 21 20 19 23 23 N 1.48135 * 105.64628 * 17.32518 * 22 21 20 24 24 C 1.48107 * 103.89258 * 332.67715 * 23 22 21 25 25 H 0.96996 * 119.99739 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.97093 * 0.02562 * 11 10 9 27 27 H 1.07999 * 119.82898 * 179.74174 * 12 11 10 28 28 H 1.08000 * 119.85660 * 180.02562 * 13 12 11 29 29 H 1.08004 * 120.02386 * 180.02562 * 14 13 12 30 30 H 1.07999 * 118.98001 * 179.74596 * 18 17 16 31 31 H 1.09001 * 110.21389 * 136.36830 * 22 21 20 32 32 H 1.08999 * 110.21876 * 258.28322 * 22 21 20 33 33 H 1.00893 * 111.00334 * 213.31260 * 23 22 21 34 34 H 1.08994 * 110.20409 * 268.29008 * 24 23 22 35 35 H 1.09003 * 110.20113 * 146.41713 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4469 2.6526 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2010 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0691 -3.5034 0.1086 11 6 3.4356 -3.4298 0.3396 12 6 4.1826 -4.5864 0.4441 13 6 3.5746 -5.8249 0.3254 14 6 2.2162 -5.9145 0.1019 15 6 1.4509 -4.7546 -0.0056 16 6 -0.0082 -4.8450 -0.2449 17 7 -0.8645 -4.1396 0.4956 18 6 -2.1615 -4.2239 0.2858 19 7 -2.6691 -4.9911 -0.6600 20 6 -1.8848 -5.7171 -1.4389 21 6 -0.5145 -5.6648 -1.2526 22 6 0.1395 -6.5760 -2.2613 23 7 -0.8867 -6.8233 -3.3006 24 6 -2.1699 -6.6671 -2.5777 25 1 -0.4849 0.8400 0.0004 26 1 3.9159 -2.4670 0.4331 27 1 5.2464 -4.5248 0.6197 28 1 4.1663 -6.7246 0.4089 29 1 1.7462 -6.8826 0.0104 30 1 -2.8304 -3.6438 0.9042 31 1 1.0102 -6.0887 -2.7001 32 1 0.4304 -7.5141 -1.7886 33 1 -0.7978 -7.7529 -3.6826 34 1 -2.5034 -7.6298 -2.1904 35 1 -2.9259 -6.2448 -3.2398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:54 Heat of formation + Delta-G solvation = 67.250810 kcal Electronic energy + Delta-G solvation = -21603.917241 eV Core-core repulsion = 18375.216159 eV Total energy + Delta-G solvation = -3228.701081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.01932 -39.01459 -37.25010 -36.48657 -33.61879 -32.35800 -31.22828 -29.51272 -28.91754 -28.15330 -25.44475 -24.78247 -22.71120 -22.04593 -21.46396 -20.42104 -18.06817 -17.62001 -17.25543 -16.11472 -15.91937 -14.95267 -14.77966 -14.59516 -14.29843 -14.11759 -13.76031 -13.54231 -13.40353 -13.22562 -12.80465 -12.60748 -12.52367 -12.06733 -11.74824 -11.44067 -11.01021 -10.91241 -10.87853 -10.50372 -10.35549 -10.06556 -9.53509 -9.42125 -8.90581 -8.69928 -8.44695 -8.10907 -7.29147 -6.50829 -4.08706 1.20613 1.40413 2.17149 2.30599 3.09831 3.10235 3.15120 3.88133 3.90550 4.14651 4.17096 4.44543 4.55960 4.72446 4.98995 5.05152 5.10034 5.15666 5.31414 5.37749 5.53353 5.65064 5.73507 5.80992 5.91254 6.01062 6.07997 6.21855 6.41615 6.55493 6.64181 6.82135 6.96352 7.08715 7.09325 7.24115 7.26838 7.51015 7.66943 7.90584 8.64783 8.92311 9.61597 10.64899 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.006371 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.849842 B = 4394.070931 C = 5574.813340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.397 4.397 8 H 0.093 0.907 9 O -0.146 6.146 10 C 0.183 3.817 11 C -0.234 4.234 12 C -0.058 4.058 13 C -0.221 4.221 14 C -0.043 4.043 15 C -0.150 4.150 16 C 0.274 3.726 17 N -0.478 5.478 18 C 0.304 3.696 19 N -0.525 5.525 20 C 0.151 3.849 21 C -0.216 4.216 22 C 0.095 3.905 23 N -0.655 5.655 24 C 0.094 3.906 25 H 0.271 0.729 26 H 0.131 0.869 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.196 0.804 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.348 0.652 34 H 0.069 0.931 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 -12.114 -2.527 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.473 4.473 8 H 0.110 0.890 9 O -0.046 6.046 10 C 0.125 3.875 11 C -0.253 4.253 12 C -0.076 4.076 13 C -0.240 4.240 14 C -0.063 4.063 15 C -0.152 4.152 16 C 0.130 3.870 17 N -0.190 5.190 18 C 0.016 3.984 19 N -0.241 5.241 20 C 0.003 3.997 21 C -0.221 4.221 22 C -0.035 4.035 23 N -0.285 5.285 24 C -0.036 4.036 25 H 0.081 0.919 26 H 0.149 0.851 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.212 0.788 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.087 0.913 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.081 -10.634 -2.319 10.884 hybrid contribution 0.960 -0.255 0.186 1.010 sum 0.878 -10.889 -2.133 11.131 Atomic orbital electron populations 1.70068 1.05971 1.27781 1.43940 1.25327 0.95835 0.98891 0.96213 0.85714 0.78992 0.79978 0.78774 1.19824 1.20149 1.19079 1.21404 0.91860 0.80892 1.53123 0.88950 1.84044 1.33879 1.11177 1.75449 1.19219 0.90074 0.87181 0.91034 1.21145 0.93827 0.99284 1.11081 1.20871 0.98587 0.92266 0.95899 1.20452 0.94306 0.96993 1.12242 1.20569 0.93517 0.95405 0.96770 1.17395 0.89151 0.91709 1.16961 1.19458 0.93402 0.86581 0.87575 1.68813 1.03706 1.19332 1.27190 1.24894 0.90032 0.91959 0.91543 1.67519 1.41431 1.08535 1.06590 1.21786 0.90187 0.93487 0.94237 1.21925 0.97168 1.03040 0.99971 1.21171 0.95758 0.96813 0.89729 1.63579 1.01420 1.33988 1.29473 1.21239 0.94061 0.96329 0.91992 0.91906 0.85109 0.87151 0.87158 0.87112 0.78776 0.88411 0.92276 0.83590 0.91346 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.61 13.67 55.48 0.76 -23.85 16 2 C 0.04 1.19 5.49 -17.51 -0.10 1.10 16 3 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.40 -10.96 9.44 30.89 0.29 -10.67 16 8 H 0.09 2.34 5.30 -52.49 -0.28 2.06 16 9 O -0.15 -4.13 8.75 0.52 0.00 -4.12 16 10 C 0.18 4.41 6.63 -38.71 -0.26 4.16 16 11 C -0.23 -4.96 9.12 -39.44 -0.36 -5.32 16 12 C -0.06 -1.01 10.03 -39.55 -0.40 -1.40 16 13 C -0.22 -3.60 10.03 -39.59 -0.40 -4.00 16 14 C -0.04 -0.76 9.00 -39.26 -0.35 -1.11 16 15 C -0.15 -3.21 5.60 -104.74 -0.59 -3.79 16 16 C 0.27 5.91 6.05 -82.69 -0.50 5.41 16 17 N -0.48 -10.99 9.82 -11.17 -0.11 -11.10 16 18 C 0.30 6.09 12.27 -92.15 -1.13 4.96 16 19 N -0.53 -9.96 10.44 -10.77 -0.11 -10.07 16 20 C 0.15 2.64 7.50 -82.20 -0.62 2.03 16 21 C -0.22 -3.95 5.99 -104.06 -0.62 -4.57 16 22 C 0.09 1.34 6.46 -4.22 -0.03 1.31 16 23 N -0.66 -8.06 7.72 -114.20 -0.88 -8.94 16 24 C 0.09 1.20 7.45 -4.16 -0.03 1.17 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.13 2.75 5.72 -52.49 -0.30 2.45 16 27 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 28 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.11 1.62 7.48 -52.48 -0.39 1.23 16 30 H 0.20 3.30 8.06 -52.49 -0.42 2.88 16 31 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 33 H 0.35 2.99 8.92 -39.30 -0.35 2.64 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -32.84 304.54 -9.26 -42.10 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -3.40 Total: 6.85 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -5.08 Total: -10.75 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.35 Total: -53.96 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: 0.00 Total: -4.12 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.84 -9.26 -42.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.349 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds