Wall clock time and date at job start Tue Mar 31 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31542 * 1 3 3 Si 1.86798 * 119.99915 * 2 1 4 4 H 1.48496 * 109.47109 * 240.00254 * 3 2 1 5 5 H 1.48498 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47240 * 120.00531 * 3 2 1 7 7 C 1.38671 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99990 * 180.02562 * 7 2 1 9 9 O 1.34823 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.35654 * 116.99734 * 185.05954 * 9 7 2 11 11 C 1.39038 * 119.94533 * 354.45128 * 10 9 7 12 12 C 1.37789 * 120.05353 * 179.97438 * 11 10 9 13 13 C 1.39500 * 119.94570 * 0.02562 * 12 11 10 14 14 C 1.48190 * 120.05486 * 180.02562 * 13 12 11 15 15 N 1.32672 * 119.16812 * 0.02562 * 14 13 12 16 16 C 1.32309 * 120.74281 * 179.97438 * 15 14 13 17 17 C 1.38377 * 118.98639 * 359.96989 * 16 15 14 18 18 C 1.38767 * 118.83813 * 0.03884 * 17 16 15 19 19 N 1.31992 * 119.21017 * 359.97043 * 18 17 16 20 20 C 1.51022 * 108.16755 * 179.97438 * 18 17 16 21 21 N 1.48096 * 105.71324 * 17.40620 * 20 18 17 22 22 C 1.48111 * 103.95780 * 332.55318 * 21 20 18 23 23 C 1.39497 * 119.88919 * 0.26787 * 13 12 11 24 24 C 1.37799 * 119.94425 * 359.43209 * 23 13 12 25 25 H 0.96999 * 120.00016 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.97261 * 359.97438 * 11 10 9 27 27 H 1.08003 * 120.02583 * 180.02562 * 12 11 10 28 28 H 1.08005 * 120.50700 * 180.02562 * 16 15 14 29 29 H 1.08995 * 110.20017 * 136.47025 * 20 18 17 30 30 H 1.08999 * 110.19958 * 258.26935 * 20 18 17 31 31 H 1.00889 * 111.00161 * 213.14451 * 21 20 18 32 32 H 1.08998 * 110.21126 * 268.36466 * 22 21 20 33 33 H 1.08999 * 110.21245 * 146.46607 * 22 21 20 34 34 H 1.08002 * 120.02982 * 179.72472 * 23 13 12 35 35 H 1.07997 * 119.97392 * 180.29952 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 3.1031 1.6964 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1032 1.6964 1.2124 7 6 2.0088 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0695 -3.5039 0.1055 11 6 3.4581 -3.4357 0.0915 12 6 4.2067 -4.5874 0.1996 13 6 3.5702 -5.8226 0.3227 14 6 4.3729 -7.0628 0.4397 15 7 5.6969 -6.9797 0.4261 16 6 6.4439 -8.0669 0.5290 17 6 5.8234 -9.2976 0.6522 18 6 4.4368 -9.3501 0.6628 19 7 3.7489 -8.2286 0.5561 20 6 4.0213 -10.7950 0.8056 21 7 5.2204 -11.5103 1.2991 22 6 6.3529 -10.7041 0.7879 23 6 2.1768 -5.8890 0.3303 24 6 1.4326 -4.7337 0.2281 25 1 -0.4850 0.8400 0.0004 26 1 3.9504 -2.4792 -0.0042 27 1 5.2853 -4.5339 0.1891 28 1 7.5215 -7.9948 0.5179 29 1 3.2075 -10.8832 1.5253 30 1 3.7138 -11.1953 -0.1605 31 1 5.2543 -12.4515 0.9376 32 1 6.6751 -11.0806 -0.1829 33 1 7.1817 -10.7277 1.4955 34 1 1.6816 -6.8445 0.4210 35 1 0.3539 -4.7840 0.2389 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587366.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:58 Heat of formation + Delta-G solvation = 64.674452 kcal Electronic energy + Delta-G solvation = -20339.687220 eV Core-core repulsion = 17110.874420 eV Total energy + Delta-G solvation = -3228.812801 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34792 -39.09423 -37.78544 -36.33425 -33.66225 -32.52683 -31.45662 -30.25046 -29.18663 -27.94875 -25.73563 -24.76586 -23.10109 -22.09392 -21.53690 -20.66892 -18.25594 -17.80372 -17.36399 -16.47847 -16.18700 -15.28871 -14.77846 -14.56698 -14.40074 -14.19086 -13.94806 -13.73173 -13.60705 -13.47691 -13.02943 -12.77424 -12.50563 -12.38132 -11.79412 -11.48642 -11.25254 -11.01076 -10.77968 -10.71344 -10.64165 -10.52507 -9.76584 -9.47459 -9.04854 -8.98972 -8.72610 -8.26643 -7.20304 -6.60225 -4.15583 0.68143 1.14313 2.23516 2.27923 3.07314 3.08707 3.11365 3.49538 3.83186 3.84295 3.87083 4.06446 4.31792 4.59845 4.62830 4.78236 4.97329 5.01014 5.03433 5.15544 5.37012 5.42225 5.51010 5.64748 5.74557 5.82005 6.06127 6.15955 6.35278 6.37602 6.58972 6.74821 6.84083 6.91591 7.05883 7.23766 7.28770 7.32711 7.69920 7.85487 8.26905 8.84491 9.51550 10.56422 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.047007 B = 0.003067 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.509402 B = 9128.351033 C = 9687.023417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.097 0.903 9 O -0.163 6.163 10 C 0.173 3.827 11 C -0.247 4.247 12 C -0.013 4.013 13 C -0.165 4.165 14 C 0.401 3.599 15 N -0.521 5.521 16 C 0.177 3.823 17 C -0.258 4.258 18 C 0.171 3.829 19 N -0.512 5.512 20 C 0.090 3.910 21 N -0.656 5.656 22 C 0.096 3.904 23 C -0.019 4.019 24 C -0.204 4.204 25 H 0.274 0.726 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.164 0.836 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.351 0.649 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.808 -17.650 0.178 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.114 0.886 9 O -0.063 6.063 10 C 0.116 3.884 11 C -0.266 4.266 12 C -0.033 4.033 13 C -0.169 4.169 14 C 0.142 3.858 15 N -0.235 5.235 16 C 0.011 3.989 17 C -0.263 4.263 18 C 0.021 3.979 19 N -0.227 5.227 20 C -0.040 4.040 21 N -0.286 5.286 22 C -0.034 4.034 23 C -0.039 4.039 24 C -0.224 4.224 25 H 0.084 0.916 26 H 0.150 0.850 27 H 0.141 0.859 28 H 0.181 0.819 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.167 0.833 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.799 -16.324 0.784 19.055 hybrid contribution 1.071 -0.187 -0.913 1.420 sum 10.870 -16.511 -0.129 19.768 Atomic orbital electron populations 1.70022 1.06115 1.28299 1.44189 1.25383 0.95897 0.99119 0.96059 0.85718 0.78750 0.79255 0.79431 1.19267 1.20128 1.19250 1.21433 0.92108 0.80596 1.52668 0.88558 1.83938 1.34903 1.11761 1.75704 1.19593 0.90368 0.87874 0.90586 1.21098 0.93555 0.98980 1.13012 1.20859 0.99329 0.90546 0.92613 1.17488 0.91983 0.88626 1.18784 1.21460 0.86332 0.90571 0.87473 1.68573 1.07022 1.31333 1.16544 1.22469 1.00430 0.86028 0.90011 1.22014 0.97578 0.97363 1.09322 1.21904 0.90874 0.94699 0.90434 1.67578 1.41465 0.97495 1.16114 1.21295 0.94979 0.86921 1.00796 1.63543 1.01250 1.05297 1.58503 1.21115 0.94833 0.88147 0.99280 1.20755 0.92047 0.97425 0.93686 1.20156 0.99835 0.89898 1.12478 0.91597 0.84960 0.85923 0.81878 0.87630 0.90894 0.83309 0.92281 0.88894 0.85574 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.25 13.67 55.48 0.76 -23.49 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.83 29.55 -169.99 -5.02 14.81 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.62 9.48 30.89 0.29 -10.32 16 8 H 0.10 2.39 5.19 -52.49 -0.27 2.12 16 9 O -0.16 -4.51 9.75 0.36 0.00 -4.50 16 10 C 0.17 4.11 6.65 -38.99 -0.26 3.86 16 11 C -0.25 -5.36 9.15 -39.45 -0.36 -5.72 16 12 C -0.01 -0.27 9.55 -39.28 -0.38 -0.64 16 13 C -0.17 -3.22 5.88 -104.87 -0.62 -3.84 16 14 C 0.40 7.25 7.55 -156.81 -1.18 6.07 16 15 N -0.52 -8.60 9.45 -11.18 -0.11 -8.71 16 16 C 0.18 2.28 11.30 -17.29 -0.20 2.08 16 17 C -0.26 -3.10 6.33 -104.28 -0.66 -3.76 16 18 C 0.17 2.35 7.50 -82.17 -0.62 1.74 16 19 N -0.51 -8.63 9.45 -7.31 -0.07 -8.70 16 20 C 0.09 0.86 7.45 -4.16 -0.03 0.83 16 21 N -0.66 -5.33 7.72 -114.20 -0.88 -6.21 16 22 C 0.10 0.79 7.45 -4.21 -0.03 0.76 16 23 C -0.02 -0.37 9.55 -39.27 -0.38 -0.75 16 24 C -0.20 -4.33 9.98 -39.45 -0.39 -4.73 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.13 2.81 5.62 -52.49 -0.30 2.51 16 27 H 0.12 2.20 7.50 -52.48 -0.39 1.80 16 28 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 29 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.35 1.79 8.92 -39.30 -0.35 1.44 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.13 2.21 7.50 -52.49 -0.39 1.81 16 35 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 LS Contribution 305.95 15.07 4.61 4.61 Total: -1.00 -31.51 305.95 -8.98 -40.50 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.38 Total: 5.11 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -4.90 Total: -13.42 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.30 Total: -47.10 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: 0.00 Total: -4.50 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.51 -8.98 -40.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587366.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.172 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds