Wall clock time and date at job start Tue Mar 31 2020 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86796 * 120.00264 * 2 1 4 4 H 1.48498 * 109.47412 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46821 * 300.00018 * 3 2 1 6 6 H 1.48502 * 109.47247 * 59.99547 * 3 2 1 7 7 C 1.38658 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99892 * 180.02562 * 7 2 1 9 9 O 1.34818 * 120.00477 * 0.02562 * 7 2 1 10 10 C 1.35678 * 117.00142 * 185.05675 * 9 7 2 11 11 C 1.39017 * 119.94749 * 354.44937 * 10 9 7 12 12 C 1.37814 * 120.05564 * 180.02562 * 11 10 9 13 13 C 1.39470 * 119.94237 * 359.97438 * 12 11 10 14 14 C 1.48257 * 120.05166 * 179.97438 * 13 12 11 15 15 C 1.39919 * 120.24012 * 179.97438 * 14 13 12 16 16 C 1.38160 * 117.66518 * 180.02562 * 15 14 13 17 17 C 1.38865 * 118.57909 * 359.97438 * 16 15 14 18 18 N 1.31911 * 119.76716 * 359.97438 * 17 16 15 19 19 N 1.28376 * 122.23030 * 0.02562 * 18 17 16 20 20 C 1.51167 * 107.98115 * 180.02562 * 17 16 15 21 21 N 1.48076 * 105.76250 * 342.54991 * 20 17 16 22 22 C 1.48121 * 103.96644 * 27.51814 * 21 20 17 23 23 C 1.39462 * 119.89515 * 0.24701 * 13 12 11 24 24 C 1.37823 * 119.94443 * 359.49892 * 23 13 12 25 25 H 0.96993 * 119.99932 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.97320 * 0.02562 * 11 10 9 27 27 H 1.07998 * 120.02898 * 179.97438 * 12 11 10 28 28 H 1.07998 * 121.17029 * 0.03590 * 15 14 13 29 29 H 1.08994 * 110.19410 * 101.63024 * 20 17 16 30 30 H 1.09000 * 110.19010 * 223.48144 * 20 17 16 31 31 H 1.00900 * 110.99653 * 146.91958 * 21 20 17 32 32 H 1.09001 * 110.21623 * 213.51014 * 22 21 20 33 33 H 1.08994 * 110.28927 * 91.61641 * 22 21 20 34 34 H 1.07996 * 120.02869 * 179.72496 * 23 13 12 35 35 H 1.08002 * 119.97080 * 180.22986 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3963 -1.2126 6 1 1.8908 2.3965 1.2124 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0695 -3.5040 0.1076 11 6 3.4580 -3.4359 0.0946 12 6 4.2065 -4.5879 0.2027 13 6 3.5700 -5.8228 0.3258 14 6 4.3729 -7.0637 0.4417 15 6 3.7384 -8.3045 0.5659 16 6 4.5381 -9.4263 0.6708 17 6 5.9170 -9.2637 0.6469 18 7 6.4319 -8.0553 0.5255 19 7 5.6995 -7.0056 0.4272 20 6 6.5503 -10.6302 0.7760 21 7 5.4869 -11.5187 1.2979 22 6 4.2323 -10.8959 0.8161 23 6 2.1770 -5.8889 0.3340 24 6 1.4327 -4.7335 0.2309 25 1 -0.4850 0.8400 0.0004 26 1 3.9504 -2.4794 -0.0004 27 1 5.2852 -4.5346 0.1921 28 1 2.6613 -8.3827 0.5792 29 1 6.8893 -10.9813 -0.1985 30 1 7.3860 -10.5931 1.4748 31 1 5.5880 -12.4550 0.9357 32 1 3.4344 -11.0445 1.5438 33 1 3.9463 -11.3182 -0.1471 34 1 1.6818 -6.8444 0.4247 35 1 0.3539 -4.7839 0.2409 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591276.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:09 Heat of formation + Delta-G solvation = 70.763100 kcal Electronic energy + Delta-G solvation = -20310.065929 eV Core-core repulsion = 17081.517152 eV Total energy + Delta-G solvation = -3228.548777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.34604 -39.18227 -37.87628 -36.61593 -33.32102 -32.45112 -31.66741 -30.35392 -29.38666 -27.60038 -25.72459 -25.28372 -23.14031 -22.38147 -21.48633 -20.71562 -18.24587 -17.77626 -17.30997 -16.53771 -15.90886 -15.80935 -15.00638 -14.62195 -14.46287 -14.30706 -13.95797 -13.79751 -13.57244 -13.27576 -13.11142 -12.83995 -12.58481 -12.37307 -11.84107 -11.69375 -11.43901 -11.13027 -10.83065 -10.71083 -10.52610 -10.19473 -9.88744 -9.62948 -9.38533 -9.01943 -8.85162 -8.37611 -7.25670 -6.65061 -4.20040 0.66916 0.83904 2.11091 2.24135 3.04010 3.06129 3.12007 3.56705 3.64020 3.75225 3.83001 3.93459 4.46082 4.49366 4.66235 4.78738 4.90954 4.94828 4.99349 5.07005 5.19261 5.22738 5.41812 5.57910 5.60516 5.71413 5.87056 6.03123 6.08797 6.20380 6.30320 6.47236 6.71060 6.76044 6.88384 7.05961 7.21690 7.26200 7.60080 7.80744 8.80030 8.86569 9.45796 10.51595 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.047314 B = 0.003031 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.646586 B = 9236.019062 C = 9791.150298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.391 4.391 8 H 0.099 0.901 9 O -0.162 6.162 10 C 0.168 3.832 11 C -0.242 4.242 12 C -0.018 4.018 13 C -0.171 4.171 14 C 0.160 3.840 15 C -0.111 4.111 16 C -0.103 4.103 17 C 0.020 3.980 18 N -0.220 5.220 19 N -0.251 5.251 20 C 0.101 3.899 21 N -0.656 5.656 22 C 0.081 3.919 23 C -0.044 4.044 24 C -0.196 4.196 25 H 0.273 0.727 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.150 0.850 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.352 0.648 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.600 -18.143 0.245 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.116 0.884 9 O -0.063 6.063 10 C 0.112 3.888 11 C -0.261 4.261 12 C -0.037 4.037 13 C -0.174 4.174 14 C 0.019 3.981 15 C -0.140 4.140 16 C -0.114 4.114 17 C -0.127 4.127 18 N -0.060 5.060 19 N -0.094 5.094 20 C -0.030 4.030 21 N -0.286 5.286 22 C -0.048 4.048 23 C -0.063 4.063 24 C -0.215 4.215 25 H 0.083 0.917 26 H 0.151 0.849 27 H 0.141 0.859 28 H 0.167 0.833 29 H 0.087 0.913 30 H 0.121 0.879 31 H 0.168 0.832 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.519 -16.722 0.829 18.353 hybrid contribution -0.896 -0.258 -0.893 1.291 sum 6.623 -16.979 -0.065 18.226 Atomic orbital electron populations 1.70041 1.06128 1.28160 1.44199 1.25397 0.95918 0.99173 0.96008 0.85577 0.79309 0.79770 0.78449 1.18779 1.19927 1.19901 1.21542 0.92196 0.80515 1.52421 0.88402 1.83937 1.34942 1.11794 1.75639 1.19548 0.90363 0.87900 0.91018 1.21149 0.93558 0.99150 1.12283 1.20910 0.99452 0.90727 0.92598 1.17678 0.91860 0.90065 1.17789 1.21454 0.91775 0.93337 0.91528 1.21690 1.01844 0.90779 0.99703 1.21427 0.95567 0.96621 0.97815 1.23221 0.93260 0.95986 1.00279 1.72453 1.31148 0.94760 1.07677 1.73358 1.04202 1.19333 1.12505 1.21156 0.95275 0.86289 1.00240 1.63556 1.01225 1.05294 1.58491 1.21338 0.94563 0.88536 1.00340 1.20630 0.92001 0.97135 0.96579 1.20092 0.99743 0.89923 1.11740 0.91655 0.84917 0.85862 0.83288 0.91296 0.87875 0.83181 0.88147 0.91318 0.86568 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.87 13.67 55.48 0.76 -23.12 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.67 29.55 -169.99 -5.02 14.64 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.42 9.48 30.89 0.29 -10.13 16 8 H 0.10 2.41 5.19 -52.48 -0.27 2.14 16 9 O -0.16 -4.40 9.75 0.30 0.00 -4.40 16 10 C 0.17 3.87 6.65 -39.01 -0.26 3.61 16 11 C -0.24 -5.14 9.15 -39.45 -0.36 -5.50 16 12 C -0.02 -0.34 9.58 -39.28 -0.38 -0.72 16 13 C -0.17 -3.07 5.88 -104.86 -0.62 -3.68 16 14 C 0.16 2.68 6.82 -82.70 -0.56 2.11 16 15 C -0.11 -1.50 9.54 -38.98 -0.37 -1.87 16 16 C -0.10 -1.26 6.33 -104.36 -0.66 -1.92 16 17 C 0.02 0.27 7.55 -82.10 -0.62 -0.35 16 18 N -0.22 -3.67 11.50 33.76 0.39 -3.28 16 19 N -0.25 -4.54 10.62 33.39 0.35 -4.18 16 20 C 0.10 0.93 7.45 -4.10 -0.03 0.90 16 21 N -0.66 -5.18 7.71 -114.17 -0.88 -6.06 16 22 C 0.08 0.67 7.45 -4.25 -0.03 0.64 16 23 C -0.04 -0.74 9.42 -39.28 -0.37 -1.11 16 24 C -0.20 -3.86 9.98 -39.45 -0.39 -4.25 16 25 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.13 2.80 5.62 -52.49 -0.30 2.50 16 27 H 0.12 2.24 7.55 -52.49 -0.40 1.84 16 28 H 0.15 1.58 6.31 -52.49 -0.33 1.25 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.35 1.69 8.92 -39.29 -0.35 1.34 16 32 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.12 1.52 6.25 -52.49 -0.33 1.19 16 35 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 303.68 15.07 4.58 4.58 Total: -1.00 -31.17 303.68 -7.50 -38.68 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -3.22 Total: 4.42 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -4.46 Total: -21.29 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.62 Total: -36.63 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: 0.00 Total: -4.40 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.17 -7.50 -38.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591276.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.441 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds