Wall clock time and date at job start Tue Mar 31 2020 05:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00284 * 2 1 4 4 O 1.20835 * 119.99609 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00404 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46538 * 304.99689 * 5 3 2 7 7 O 1.42893 * 109.47356 * 185.00020 * 5 3 2 8 8 C 1.52994 * 109.47129 * 64.99576 * 5 3 2 9 9 N 1.46500 * 109.47095 * 185.00214 * 8 5 3 10 10 C 1.39790 * 119.99843 * 180.02562 * 9 8 5 11 11 C 1.39408 * 119.91197 * 359.72682 * 10 9 8 12 12 C 1.38371 * 120.46069 * 179.76179 * 11 10 9 13 13 C 1.38008 * 120.28918 * 0.51503 * 12 11 10 14 14 F 1.35101 * 120.08944 * 179.72204 * 13 12 11 15 15 C 1.41010 * 119.81956 * 359.73922 * 13 12 11 16 16 C 1.41290 * 120.22688 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00189 * 24.58578 * 16 15 13 18 18 C 1.39916 * 119.99915 * 204.59599 * 16 15 13 19 19 N 1.30854 * 120.00411 * 17.78089 * 18 16 15 20 20 Si 1.86811 * 119.99967 * 197.78686 * 18 16 15 21 21 H 1.48496 * 109.46989 * 89.99189 * 20 18 16 22 22 H 1.48499 * 109.46855 * 209.99828 * 20 18 16 23 23 H 1.48503 * 109.46721 * 329.99608 * 20 18 16 24 24 C 1.38157 * 119.91110 * 179.97438 * 10 9 8 25 25 H 1.08993 * 109.47020 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46473 * 300.00083 * 1 2 3 27 27 H 1.08999 * 109.47145 * 59.99975 * 1 2 3 28 28 H 0.96707 * 114.00029 * 299.99623 * 7 5 3 29 29 H 1.08999 * 109.47641 * 305.00656 * 8 5 3 30 30 H 1.09006 * 109.47065 * 65.00026 * 8 5 3 31 31 H 0.96997 * 119.99830 * 0.02562 * 9 8 5 32 32 H 1.07995 * 119.77279 * 0.02562 * 11 10 9 33 33 H 1.08002 * 119.86057 * 180.23655 * 12 11 10 34 34 H 0.97000 * 120.00033 * 180.02562 * 19 18 16 35 35 H 1.08002 * 120.14966 * 359.96120 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9603 0.7051 0.8410 7 8 3.9719 2.6400 0.1170 8 6 4.1071 0.6930 -1.3082 9 7 5.5709 0.6597 -1.2594 10 6 6.2954 0.1656 -2.3481 11 6 5.6229 -0.3002 -3.4769 12 6 6.3288 -0.7870 -4.5629 13 6 7.7080 -0.8265 -4.5355 14 9 8.3930 -1.3078 -5.5959 15 6 8.4004 -0.3633 -3.3978 16 6 9.8123 -0.4002 -3.3603 17 1 10.3773 -0.3932 -4.2807 18 6 10.4786 -0.4459 -2.1308 19 7 9.8329 -0.8009 -1.0495 20 14 12.2900 0.0002 -2.0330 21 1 12.4280 1.4555 -1.7722 22 1 12.9288 -0.7631 -0.9309 23 1 12.9530 -0.3375 -3.3182 24 6 7.6758 0.1356 -2.3004 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 3.6562 3.2072 -0.5999 29 1 3.7248 -0.3191 -1.4411 30 1 3.7854 1.3153 -2.1433 31 1 6.0373 0.9804 -0.4718 32 1 4.5436 -0.2770 -3.5058 33 1 5.7980 -1.1420 -5.4339 34 1 10.2948 -0.8322 -0.1971 35 1 8.1962 0.4934 -1.4243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252431781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:02 Heat of formation + Delta-G solvation = -161.966572 kcal Electronic energy + Delta-G solvation = -21592.921618 eV Core-core repulsion = 17891.218949 eV Total energy + Delta-G solvation = -3701.702669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -47.06894 -40.89091 -38.22654 -37.37820 -36.37597 -34.59511 -33.30534 -30.48870 -29.71630 -28.15795 -26.62414 -25.31636 -23.70799 -21.66304 -21.07630 -20.14684 -18.42397 -17.65377 -17.28803 -16.90125 -16.31311 -15.88425 -15.51497 -15.24658 -14.97048 -14.60129 -13.88580 -13.87688 -13.75431 -13.44844 -13.04699 -12.92409 -12.52955 -12.42051 -12.10173 -11.72892 -11.61834 -11.42007 -11.13231 -11.10587 -11.03265 -10.97175 -10.52440 -10.36601 -10.03467 -9.44513 -9.32223 -8.76376 -7.55397 -6.85959 -6.24456 -4.42466 1.81249 2.33891 2.73142 2.92976 3.06724 3.11373 3.20086 3.78293 3.91489 4.26303 4.52943 4.56785 4.61698 4.82407 4.83392 4.90965 5.24256 5.52268 5.67402 5.72008 6.00315 6.02203 6.13076 6.49657 6.81427 6.96412 7.12675 7.15236 7.24747 7.43847 7.56665 7.62844 7.86622 8.04396 8.27599 8.52197 8.64887 8.77183 8.92220 10.12157 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.003918 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.652668 B = 7144.575560 C = 8025.613971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.352 6.352 3 C 0.439 3.561 4 O -0.501 6.501 5 C 0.111 3.889 6 H 0.144 0.856 7 O -0.526 6.526 8 C 0.114 3.886 9 N -0.752 5.752 10 C 0.212 3.788 11 C -0.281 4.281 12 C -0.091 4.091 13 C -0.062 4.062 14 F -0.168 7.168 15 C 0.118 3.882 16 C -0.454 4.454 17 H 0.083 0.917 18 C 0.078 3.922 19 N -0.785 5.785 20 Si 0.910 3.090 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.214 4.214 25 H 0.103 0.897 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.387 0.613 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.397 0.603 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.281 0.719 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 2.113 4.533 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.280 3.720 4 O -0.388 6.388 5 C 0.049 3.951 6 H 0.161 0.839 7 O -0.332 6.332 8 C -0.013 4.013 9 N -0.387 5.387 10 C 0.114 3.886 11 C -0.304 4.304 12 C -0.110 4.110 13 C -0.082 4.082 14 F -0.147 7.147 15 C 0.114 3.886 16 C -0.483 4.483 17 H 0.101 0.899 18 C -0.140 4.140 19 N -0.410 5.410 20 Si 0.735 3.265 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.238 4.238 25 H 0.122 0.878 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.237 0.763 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.232 0.768 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.595 2.091 5.209 13.789 hybrid contribution 0.402 0.373 -0.218 0.590 sum -12.194 2.463 4.991 13.404 Atomic orbital electron populations 1.23312 0.76123 1.03968 1.02566 1.86557 1.23650 1.33054 1.83595 1.24772 0.93027 0.81803 0.72357 1.90686 1.66810 1.36416 1.44920 1.21787 0.85281 0.85915 1.02106 0.83863 1.86668 1.75758 1.17550 1.53232 1.21587 0.84369 1.01150 0.94145 1.44177 1.02314 1.73330 1.18922 1.17585 0.91041 0.93594 0.86407 1.19671 0.96965 1.18179 0.95600 1.20238 0.92183 1.00812 0.97798 1.17769 0.89045 1.12979 0.88457 1.91247 1.80624 1.87333 1.55522 1.17318 0.93516 0.88422 0.89344 1.19526 0.91334 1.43871 0.93538 0.89937 1.25896 1.01009 0.92072 0.95065 1.69847 1.38687 1.32132 1.00321 0.86268 0.81702 0.79506 0.79058 1.19161 1.20245 1.18482 1.20537 0.89718 1.11368 1.02143 0.87815 0.91873 0.91748 0.76325 0.90787 0.92289 0.76797 0.88784 0.88300 0.90795 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.80 10.53 -39.26 -0.41 -4.21 16 3 C 0.44 5.21 7.27 36.01 0.26 5.48 16 4 O -0.50 -7.03 16.07 -25.47 -0.41 -7.44 16 5 C 0.11 1.26 3.52 -27.89 -0.10 1.17 16 6 H 0.14 1.48 8.14 -51.93 -0.42 1.05 16 7 O -0.53 -6.41 12.94 -55.13 -0.71 -7.13 16 8 C 0.11 1.52 4.52 -4.04 -0.02 1.50 16 9 N -0.75 -12.84 5.68 -58.67 -0.33 -13.17 16 10 C 0.21 4.60 6.64 -83.82 -0.56 4.04 16 11 C -0.28 -5.99 9.32 -39.10 -0.36 -6.35 16 12 C -0.09 -2.06 10.00 -39.62 -0.40 -2.46 16 13 C -0.06 -1.59 7.31 -38.62 -0.28 -1.87 16 14 F -0.17 -4.33 16.71 2.25 0.04 -4.30 16 15 C 0.12 3.16 5.58 -106.78 -0.60 2.56 16 16 C -0.45 -12.19 8.78 -37.79 -0.33 -12.52 16 17 H 0.08 2.21 7.73 -52.49 -0.41 1.80 16 18 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 19 N -0.79 -19.67 10.96 55.55 0.61 -19.06 16 20 Si 0.91 18.55 29.60 -169.99 -5.03 13.52 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.21 -5.30 8.52 -38.70 -0.33 -5.63 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.39 3.88 8.79 45.56 0.40 4.28 16 29 H 0.07 0.99 7.91 -51.93 -0.41 0.58 16 30 H 0.06 0.78 7.95 -51.93 -0.41 0.37 16 31 H 0.40 6.55 8.48 -40.82 -0.35 6.20 16 32 H 0.09 1.75 6.70 -52.49 -0.35 1.39 16 33 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 35 H 0.13 3.18 6.17 -52.49 -0.32 2.86 16 LS Contribution 313.60 15.07 4.73 4.73 Total: -1.00 -30.16 313.60 -6.36 -36.52 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.10 Total: 11.43 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.73 Total: -10.89 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.28 Total: -32.23 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -1.54 Total: -18.78 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.04 Total: -4.30 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.16 -6.36 -36.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252431781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.446 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds