Wall clock time and date at job start Tue Mar 31 2020 05:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81399 * 103.00076 * 2 1 4 4 C 1.53005 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47137 * 60.00691 * 4 3 2 6 6 O 1.42901 * 109.47316 * 300.00269 * 4 3 2 7 7 C 1.53003 * 109.46968 * 180.02562 * 4 3 2 8 8 N 1.46498 * 109.47134 * 185.00114 * 7 4 3 9 9 C 1.39779 * 120.00100 * 179.97438 * 8 7 4 10 10 C 1.38950 * 120.00902 * 359.72415 * 9 8 7 11 11 C 1.38007 * 119.99360 * 179.71916 * 10 9 8 12 12 C 1.38892 * 120.01060 * 0.55599 * 11 10 9 13 13 O 1.35796 * 119.99743 * 179.69895 * 12 11 10 14 14 C 1.34812 * 116.99880 * 174.48125 * 13 12 11 15 15 H 1.07996 * 120.00132 * 5.05534 * 14 13 12 16 16 C 1.38624 * 120.00171 * 185.05960 * 14 13 12 17 17 N 1.31584 * 119.99324 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00293 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47259 * 59.99541 * 18 16 14 20 20 H 1.48504 * 109.46880 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47262 * 299.99637 * 18 16 14 22 22 C 1.38900 * 120.00977 * 359.72149 * 12 11 10 23 23 C 1.38011 * 120.00573 * 359.97438 * 22 12 11 24 24 H 1.08992 * 109.47275 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47458 * 59.99378 * 1 2 3 26 26 H 1.09000 * 109.46852 * 299.99977 * 1 2 3 27 27 H 1.08995 * 109.47445 * 300.00527 * 3 2 1 28 28 H 1.09000 * 109.47086 * 60.00444 * 3 2 1 29 29 H 0.96705 * 113.99616 * 300.00074 * 6 4 3 30 30 H 1.09004 * 109.46904 * 305.00166 * 7 4 3 31 31 H 1.08994 * 109.47722 * 64.99995 * 7 4 3 32 32 H 0.96999 * 120.00107 * 359.97438 * 8 7 4 33 33 H 1.07998 * 119.99788 * 0.02562 * 10 9 8 34 34 H 1.08007 * 119.99268 * 180.25656 * 11 10 9 35 35 H 0.97005 * 119.99580 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.00261 * 179.97438 * 22 12 11 37 37 H 1.08000 * 120.00270 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1609 1.4705 -0.8909 6 8 4.2921 1.3241 1.1658 7 6 4.0865 3.4307 0.0000 8 7 5.5370 3.5971 -0.1210 9 6 6.0940 4.8789 -0.1434 10 6 5.2717 5.9956 -0.0566 11 6 5.8225 7.2609 -0.0729 12 6 7.1976 7.4185 -0.1877 13 8 7.7387 8.6638 -0.2098 14 6 9.0843 8.7465 -0.2075 15 1 9.6807 7.8484 -0.2711 16 6 9.7025 9.9844 -0.1234 17 7 8.9759 11.0787 -0.0463 18 14 11.5670 10.0991 -0.1209 19 1 12.1005 9.5163 -1.3782 20 1 11.9751 11.5237 -0.0238 21 1 12.1075 9.3486 1.0408 22 6 8.0195 6.3026 -0.2802 23 6 7.4698 5.0368 -0.2577 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 1.8031 2.2372 -0.8899 28 1 1.8032 2.2371 0.8900 29 1 3.9635 1.6928 1.9972 30 1 3.5935 3.9178 -0.8413 31 1 3.7456 3.8820 0.9317 32 1 6.1108 2.8177 -0.1856 33 1 4.2021 5.8731 0.0285 34 1 5.1836 8.1288 -0.0013 35 1 9.4085 11.9449 0.0129 36 1 9.0887 6.4253 -0.3698 37 1 8.1088 4.1692 -0.3300 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261437880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:13 Heat of formation + Delta-G solvation = -48.961157 kcal Electronic energy + Delta-G solvation = -18929.834901 eV Core-core repulsion = 15799.245691 eV Total energy + Delta-G solvation = -3130.589210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.15874 -38.27085 -36.71942 -34.06531 -32.12927 -31.48455 -30.19689 -29.35182 -27.93368 -25.83773 -24.64147 -22.68289 -21.48619 -20.69689 -17.91691 -17.32209 -17.07201 -16.50100 -16.38447 -15.80495 -15.03450 -14.63384 -14.40661 -14.24834 -14.05263 -13.70764 -13.63120 -13.45857 -13.30311 -12.67740 -12.64316 -12.49930 -12.37502 -11.58988 -11.51643 -11.41914 -11.29562 -10.92085 -10.60235 -10.42686 -10.36450 -10.29914 -9.24725 -9.18852 -8.45009 -8.17703 -8.03409 -6.41342 -6.32004 -3.89305 1.21545 2.18349 2.19697 2.56532 3.19433 3.20526 3.23027 3.63402 4.06491 4.07650 4.39708 4.54341 4.65249 4.67600 4.70369 4.74322 5.01463 5.11108 5.20223 5.27575 5.39972 5.47524 5.66312 5.71555 5.76527 6.20468 6.22803 6.52715 6.85652 6.89346 7.12414 7.30259 7.32615 7.44410 7.63224 7.96375 8.12311 8.23019 9.13844 9.87995 10.86617 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.058904 B = 0.002477 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.238876 B =11303.184834 C =11666.280017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.235 6.235 3 C -0.123 4.123 4 C 0.116 3.884 5 H 0.111 0.889 6 O -0.546 6.546 7 C 0.110 3.890 8 N -0.754 5.754 9 C 0.123 3.877 10 C -0.147 4.147 11 C -0.151 4.151 12 C 0.114 3.886 13 O -0.188 6.188 14 C -0.387 4.387 15 H 0.088 0.912 16 C 0.036 3.964 17 N -0.869 5.869 18 Si 0.938 3.062 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.271 1.271 22 C -0.189 4.189 23 C -0.140 4.140 24 H 0.101 0.899 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.377 0.623 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.395 0.605 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.268 0.732 36 H 0.128 0.872 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 -18.628 0.558 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S -0.009 6.009 3 C -0.273 4.273 4 C 0.055 3.945 5 H 0.129 0.871 6 O -0.351 6.351 7 C -0.018 4.018 8 N -0.391 5.391 9 C 0.025 3.975 10 C -0.169 4.169 11 C -0.171 4.171 12 C 0.061 3.939 13 O -0.093 6.093 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.167 4.167 17 N -0.506 5.506 18 Si 0.763 3.237 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.197 1.197 22 C -0.209 4.209 23 C -0.162 4.162 24 H 0.120 0.880 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.224 0.776 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.230 0.770 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.483 -19.321 0.138 23.561 hybrid contribution -0.121 1.165 0.333 1.218 sum -13.603 -18.156 0.472 22.692 Atomic orbital electron populations 1.23434 0.95018 1.06555 1.04879 1.87204 1.06074 1.09664 1.98000 1.24185 1.00974 0.96069 1.06028 1.21817 0.89276 0.92865 0.90573 0.87088 1.86646 1.69885 1.63000 1.15560 1.21722 0.84121 0.94619 1.01314 1.44013 1.04351 1.04777 1.85932 1.17382 0.91912 0.84418 1.03799 1.20141 0.97731 0.91010 1.08019 1.20010 0.92646 0.96536 1.07942 1.19241 0.92302 0.86008 0.96345 1.83985 1.22966 1.21425 1.80915 1.21188 0.78755 0.94254 1.52202 0.89488 1.25221 1.00183 0.94305 0.97006 1.70043 1.35640 0.97807 1.47082 0.85829 0.81124 0.77700 0.79024 1.19676 1.20433 1.19666 1.21004 1.00452 0.91577 1.07887 1.20247 0.92434 0.96753 1.06732 0.88038 0.90562 0.90520 0.88821 0.89491 0.77577 0.92103 0.92608 0.77043 0.87355 0.86554 0.92257 0.85453 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.71 10.76 101.05 1.09 0.37 16 2 S -0.24 -1.98 22.02 -107.50 -2.37 -4.35 16 3 C -0.12 -0.85 5.64 37.16 0.21 -0.64 16 4 C 0.12 0.97 3.05 -26.73 -0.08 0.89 16 5 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 6 O -0.55 -5.20 12.88 -35.23 -0.45 -5.65 16 7 C 0.11 1.09 4.55 -4.04 -0.02 1.08 16 8 N -0.75 -9.93 5.68 -58.58 -0.33 -10.26 16 9 C 0.12 2.10 6.66 -83.71 -0.56 1.55 16 10 C -0.15 -2.62 9.31 -39.40 -0.37 -2.99 16 11 C -0.15 -3.23 9.98 -39.42 -0.39 -3.62 16 12 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 13 O -0.19 -5.47 9.76 -0.04 0.00 -5.47 16 14 C -0.39 -11.05 9.48 30.87 0.29 -10.76 16 15 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 16 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 17 N -0.87 -26.05 13.67 55.48 0.76 -25.29 16 18 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 C -0.19 -4.18 9.16 -39.42 -0.36 -4.54 16 23 C -0.14 -2.60 9.89 -39.40 -0.39 -2.99 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.38 2.56 9.05 45.56 0.41 2.97 16 30 H 0.06 0.60 7.94 -51.93 -0.41 0.19 16 31 H 0.06 0.54 7.96 -51.93 -0.41 0.13 16 32 H 0.40 4.92 8.48 -40.82 -0.35 4.57 16 33 H 0.11 1.61 6.73 -52.49 -0.35 1.26 16 34 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.13 2.81 5.63 -52.49 -0.30 2.52 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -32.66 329.75 -7.58 -40.25 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.20 Total: 8.04 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: -0.93 Total: -18.21 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.43 Total: -35.55 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -0.45 Total: -11.12 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.37 Total: -4.35 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.66 -7.58 -40.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261437880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.716 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds