Wall clock time and date at job start Tue Mar 31 2020 05:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81399 * 103.00076 * 2 1 4 4 C 1.53005 * 109.47058 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47137 * 60.00691 * 4 3 2 6 6 O 1.42901 * 109.47316 * 300.00269 * 4 3 2 7 7 C 1.53003 * 109.46968 * 180.02562 * 4 3 2 8 8 N 1.46498 * 109.47134 * 185.00114 * 7 4 3 9 9 C 1.39779 * 120.00100 * 179.97438 * 8 7 4 10 10 C 1.38950 * 120.00902 * 359.72415 * 9 8 7 11 11 C 1.38007 * 119.99360 * 179.71916 * 10 9 8 12 12 C 1.38892 * 120.01060 * 0.55599 * 11 10 9 13 13 O 1.35796 * 119.99743 * 179.69895 * 12 11 10 14 14 C 1.34812 * 116.99880 * 174.48125 * 13 12 11 15 15 H 1.07996 * 120.00132 * 5.05534 * 14 13 12 16 16 C 1.38624 * 120.00171 * 185.05960 * 14 13 12 17 17 N 1.31584 * 119.99324 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00293 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47259 * 59.99541 * 18 16 14 20 20 H 1.48504 * 109.46880 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47262 * 299.99637 * 18 16 14 22 22 C 1.38900 * 120.00977 * 359.72149 * 12 11 10 23 23 C 1.38011 * 120.00573 * 359.97438 * 22 12 11 24 24 H 1.08992 * 109.47275 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47458 * 59.99378 * 1 2 3 26 26 H 1.09000 * 109.46852 * 299.99977 * 1 2 3 27 27 H 1.08995 * 109.47445 * 300.00527 * 3 2 1 28 28 H 1.09000 * 109.47086 * 60.00444 * 3 2 1 29 29 H 0.96705 * 113.99616 * 300.00074 * 6 4 3 30 30 H 1.09004 * 109.46904 * 305.00166 * 7 4 3 31 31 H 1.08994 * 109.47722 * 64.99995 * 7 4 3 32 32 H 0.96999 * 120.00107 * 359.97438 * 8 7 4 33 33 H 1.07998 * 119.99788 * 0.02562 * 10 9 8 34 34 H 1.08007 * 119.99268 * 180.25656 * 11 10 9 35 35 H 0.97005 * 119.99580 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.00261 * 179.97438 * 22 12 11 37 37 H 1.08000 * 120.00270 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.1609 1.4705 -0.8909 6 8 4.2921 1.3241 1.1658 7 6 4.0865 3.4307 0.0000 8 7 5.5370 3.5971 -0.1210 9 6 6.0940 4.8789 -0.1434 10 6 5.2717 5.9956 -0.0566 11 6 5.8225 7.2609 -0.0729 12 6 7.1976 7.4185 -0.1877 13 8 7.7387 8.6638 -0.2098 14 6 9.0843 8.7465 -0.2075 15 1 9.6807 7.8484 -0.2711 16 6 9.7025 9.9844 -0.1234 17 7 8.9759 11.0787 -0.0463 18 14 11.5670 10.0991 -0.1209 19 1 12.1005 9.5163 -1.3782 20 1 11.9751 11.5237 -0.0238 21 1 12.1075 9.3486 1.0408 22 6 8.0195 6.3026 -0.2802 23 6 7.4698 5.0368 -0.2577 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 1.8031 2.2372 -0.8899 28 1 1.8032 2.2371 0.8900 29 1 3.9635 1.6928 1.9972 30 1 3.5935 3.9178 -0.8413 31 1 3.7456 3.8820 0.9317 32 1 6.1108 2.8177 -0.1856 33 1 4.2021 5.8731 0.0285 34 1 5.1836 8.1288 -0.0013 35 1 9.4085 11.9449 0.0129 36 1 9.0887 6.4253 -0.3698 37 1 8.1088 4.1692 -0.3300 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261437880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:11 Heat of formation + Delta-G solvation = -72.928356 kcal Electronic energy + Delta-G solvation = -18930.874197 eV Core-core repulsion = 15799.245691 eV Total energy + Delta-G solvation = -3131.628506 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.73131 -39.34172 -38.18019 -35.36426 -34.06576 -32.36236 -31.75329 -29.83666 -29.21178 -27.48983 -26.09118 -23.91679 -22.61105 -22.26467 -19.70644 -18.86454 -18.13934 -17.73006 -17.16506 -16.57870 -16.40145 -16.13830 -15.64108 -15.40893 -15.18575 -14.91521 -14.78457 -14.46677 -14.26561 -14.21637 -14.04901 -13.43278 -13.31137 -13.16715 -12.91523 -12.79676 -12.52652 -12.35755 -12.15868 -12.04458 -11.12002 -11.09147 -10.90781 -10.87635 -10.18368 -9.76859 -8.65093 -8.38752 -7.93100 -6.02292 0.59339 0.68370 0.93880 1.37033 1.48166 1.53014 1.68500 2.23291 2.59733 2.91922 3.26026 3.46423 3.65312 3.70563 3.94769 3.96570 4.13974 4.19176 4.33906 4.35997 4.37086 4.57302 4.58472 4.67908 4.71564 4.90207 4.95829 5.02062 5.13521 5.28165 5.47458 5.55109 5.79582 5.98597 6.12002 6.60556 6.76204 7.01072 7.07174 7.93826 8.85428 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.058904 B = 0.002477 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.238876 B =11303.184834 C =11666.280017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.296 6.296 3 C -0.109 4.109 4 C 0.126 3.874 5 H 0.103 0.897 6 O -0.562 6.562 7 C 0.105 3.895 8 N -0.743 5.743 9 C 0.153 3.847 10 C -0.144 4.144 11 C -0.155 4.155 12 C 0.061 3.939 13 O -0.242 6.242 14 C -0.406 4.406 15 H 0.097 0.903 16 C -0.029 4.029 17 N -0.926 5.926 18 Si 1.016 2.984 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.259 1.259 22 C -0.194 4.194 23 C -0.147 4.147 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.388 0.612 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.402 0.598 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.270 0.730 36 H 0.118 0.882 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.290 -21.218 0.688 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.070 6.070 3 C -0.258 4.258 4 C 0.065 3.935 5 H 0.121 0.879 6 O -0.369 6.369 7 C -0.021 4.021 8 N -0.377 5.377 9 C 0.052 3.948 10 C -0.166 4.166 11 C -0.175 4.175 12 C 0.011 3.989 13 O -0.150 6.150 14 C -0.483 4.483 15 H 0.115 0.885 16 C -0.225 4.225 17 N -0.566 5.566 18 Si 0.836 3.164 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.183 1.183 22 C -0.214 4.214 23 C -0.169 4.169 24 H 0.126 0.874 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.237 0.763 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.238 0.762 33 H 0.164 0.836 34 H 0.132 0.868 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.619 -22.009 0.274 26.423 hybrid contribution -0.078 1.615 0.305 1.645 sum -14.697 -20.394 0.579 25.145 Atomic orbital electron populations 1.23453 0.91936 1.07315 1.05822 1.87415 1.09618 1.11844 1.98172 1.24086 0.99697 0.94616 1.07378 1.21655 0.90296 0.91430 0.90072 0.87948 1.86629 1.70374 1.63505 1.16425 1.21965 0.81787 0.96039 1.02359 1.44151 1.06184 1.03294 1.84113 1.17511 0.91422 0.86002 0.99901 1.20439 0.99687 0.89557 1.06903 1.20253 0.91523 0.98242 1.07496 1.19760 0.93934 0.85560 0.99622 1.83931 1.23207 1.24049 1.83818 1.21701 0.79359 0.95082 1.52147 0.88530 1.26527 1.05961 0.93580 0.96463 1.70200 1.38105 0.98490 1.49794 0.84679 0.73898 0.78050 0.79771 1.18304 1.19771 1.18340 1.21053 0.99934 0.92453 1.07944 1.20496 0.93753 0.96198 1.06475 0.87443 0.89618 0.89521 0.87615 0.87960 0.76264 0.90954 0.91340 0.76221 0.83568 0.86764 0.92156 0.86459 0.84663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.76 113.37 1.22 0.25 16 2 S -0.30 -4.37 22.02 -56.49 -1.24 -5.61 16 3 C -0.11 -1.12 5.64 71.98 0.41 -0.72 16 4 C 0.13 1.69 3.05 30.60 0.09 1.78 16 5 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 6 O -0.56 -9.02 12.88 -148.98 -1.92 -10.94 16 7 C 0.10 1.62 4.55 86.38 0.39 2.02 16 8 N -0.74 -16.53 5.68 -339.26 -1.93 -18.46 16 9 C 0.15 4.75 6.66 38.22 0.25 5.01 16 10 C -0.14 -4.75 9.31 22.39 0.21 -4.54 16 11 C -0.16 -6.65 9.98 22.37 0.22 -6.42 16 12 C 0.06 3.09 6.65 22.59 0.15 3.24 16 13 O -0.24 -14.95 9.76 -23.07 -0.23 -15.17 16 14 C -0.41 -24.31 9.48 67.91 0.64 -23.67 16 15 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 16 C -0.03 -1.70 5.49 84.82 0.47 -1.24 16 17 N -0.93 -58.29 13.67 21.61 0.30 -58.00 16 18 Si 1.02 44.11 29.55 68.60 2.03 46.14 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 22 C -0.19 -8.67 9.16 22.37 0.20 -8.46 16 23 C -0.15 -5.19 9.89 22.39 0.22 -4.97 16 24 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.39 4.04 9.05 -74.05 -0.67 3.37 16 30 H 0.07 1.05 7.94 -2.38 -0.02 1.03 16 31 H 0.07 0.98 7.96 -2.39 -0.02 0.96 16 32 H 0.40 8.39 8.48 -92.71 -0.79 7.60 16 33 H 0.15 3.70 6.73 -2.91 -0.02 3.68 16 34 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 35 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 36 H 0.12 5.34 5.63 -2.91 -0.02 5.33 16 37 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -75.49 329.75 1.13 -74.36 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -0.36 Total: 25.40 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.48 Total: -37.72 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -1.63 Total: -76.46 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -2.14 Total: -26.11 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -1.24 Total: -5.61 kcal Total: -75.49 1.13 -74.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261437880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.429 kcal (2) G-P(sol) polarization free energy of solvation -75.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds