Wall clock time and date at job start Tue Mar 31 2020 05:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86803 * 119.99658 * 2 1 4 4 H 1.48507 * 109.46891 * 269.40679 * 3 2 1 5 5 H 1.48503 * 109.46877 * 29.40526 * 3 2 1 6 6 H 1.48500 * 109.46817 * 149.40683 * 3 2 1 7 7 C 1.40274 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00021 * 354.30140 * 7 2 1 9 9 C 1.40889 * 119.99508 * 174.30193 * 7 2 1 10 10 C 1.40706 * 120.33462 * 321.58840 * 9 7 2 11 11 C 1.37586 * 119.88473 * 180.30027 * 10 9 7 12 12 C 1.38834 * 120.57178 * 359.67800 * 11 10 9 13 13 C 1.38213 * 120.67374 * 359.97438 * 12 11 10 14 14 C 1.39231 * 120.09575 * 0.02562 * 13 12 11 15 15 C 1.47419 * 120.28738 * 180.02562 * 14 13 12 16 16 O 1.21607 * 120.00245 * 175.07761 * 15 14 13 17 17 N 1.34786 * 120.00038 * 355.08185 * 15 14 13 18 18 C 1.46492 * 120.00141 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.47431 * 180.02562 * 18 17 15 20 20 C 1.38616 * 120.45016 * 94.97376 * 19 18 17 21 21 C 1.38575 * 118.40091 * 180.02562 * 20 19 18 22 22 N 1.32349 * 119.10182 * 359.97438 * 21 20 19 23 23 C 1.31777 * 120.82053 * 0.02562 * 22 21 20 24 24 N 1.31800 * 121.75507 * 0.02562 * 23 22 21 25 25 H 0.96998 * 120.00485 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.05397 * 359.97438 * 10 9 7 27 27 H 1.08004 * 119.71571 * 179.69765 * 11 10 9 28 28 H 1.08001 * 119.66109 * 180.02562 * 12 11 10 29 29 H 1.08000 * 119.95597 * 180.02562 * 13 12 11 30 30 H 0.97002 * 119.99737 * 359.97438 * 17 15 14 31 31 H 1.08995 * 109.47345 * 59.99884 * 18 17 15 32 32 H 1.09001 * 109.47517 * 299.99872 * 18 17 15 33 33 H 1.08005 * 120.79659 * 0.05006 * 20 19 18 34 34 H 1.07995 * 120.44982 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.11968 * 180.27668 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.5003 2.0392 -1.4001 5 1 1.4313 2.6563 0.6874 6 1 3.5315 1.4439 0.7126 7 6 2.0077 -1.2148 0.0005 8 1 1.4718 -2.1477 0.0938 9 6 3.4114 -1.2177 -0.1206 10 6 4.0524 -0.3066 -0.9801 11 6 5.4233 -0.3217 -1.0960 12 6 6.1837 -1.2253 -0.3661 13 6 5.5789 -2.1257 0.4904 14 6 4.1936 -2.1349 0.6292 15 6 3.5441 -3.0931 1.5420 16 8 2.3435 -3.0381 1.7276 17 7 4.2810 -4.0301 2.1711 18 6 3.6357 -4.9819 3.0786 19 6 4.6728 -5.9155 3.6478 20 6 5.2573 -5.6510 4.8766 21 6 6.2066 -6.5376 5.3595 22 7 6.5211 -7.6007 4.6366 23 6 5.9444 -7.8200 3.4722 24 7 5.0385 -6.9983 2.9810 25 1 -0.4851 0.8400 -0.0004 26 1 3.4688 0.3998 -1.5519 27 1 5.9121 0.3756 -1.7603 28 1 7.2589 -1.2240 -0.4681 29 1 6.1817 -2.8233 1.0530 30 1 5.2386 -4.0741 2.0228 31 1 2.8897 -5.5576 2.5309 32 1 3.1516 -4.4390 3.8904 33 1 4.9793 -4.7751 5.4441 34 1 6.6826 -6.3639 6.3131 35 1 6.2185 -8.6987 2.9071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297510939.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:26 Heat of formation + Delta-G solvation = 38.942824 kcal Electronic energy + Delta-G solvation = -20819.358484 eV Core-core repulsion = 17589.429876 eV Total energy + Delta-G solvation = -3229.928608 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.22800 -39.08659 -37.13018 -35.11305 -33.74253 -33.26135 -32.18830 -30.50008 -30.18863 -27.28299 -25.28832 -24.59191 -23.09386 -22.18767 -20.97358 -19.64040 -17.83706 -17.74744 -17.29586 -16.38390 -15.66814 -15.61046 -15.26639 -14.65816 -14.46928 -14.15904 -14.11636 -13.81839 -13.55528 -12.85610 -12.70147 -12.46155 -12.39761 -11.91896 -11.52395 -11.10503 -10.98014 -10.94652 -10.75413 -10.49136 -10.15038 -9.91580 -9.81544 -9.46299 -9.29072 -8.59847 -8.53129 -7.86229 -7.62341 -6.89751 -4.49277 0.64400 0.78660 2.05494 2.56519 3.07710 3.16430 3.27053 3.42879 3.75955 3.92907 3.93688 3.95478 4.04828 4.26862 4.57642 4.76633 4.82292 5.25357 5.31559 5.36482 5.67222 5.72089 5.76010 5.92635 6.02525 6.14486 6.32707 6.46076 6.75425 6.77409 6.91221 7.07220 7.18898 7.34361 7.53786 7.70010 7.85594 7.96885 8.20249 8.45411 8.59016 8.80608 9.24739 10.08475 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.004225 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.716778 B = 6626.385344 C = 7285.206440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.079 3.921 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.396 4.396 8 H 0.115 0.885 9 C 0.119 3.881 10 C -0.225 4.225 11 C -0.065 4.065 12 C -0.251 4.251 13 C -0.042 4.042 14 C -0.246 4.246 15 C 0.564 3.436 16 O -0.521 6.521 17 N -0.742 5.742 18 C 0.173 3.827 19 C 0.167 3.833 20 C -0.211 4.211 21 C 0.146 3.854 22 N -0.523 5.523 23 C 0.293 3.707 24 N -0.505 5.505 25 H 0.287 0.713 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.169 0.831 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.586 -7.387 7.672 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.166 1.166 7 C -0.423 4.423 8 H 0.133 0.867 9 C 0.114 3.886 10 C -0.243 4.243 11 C -0.084 4.084 12 C -0.271 4.271 13 C -0.061 4.061 14 C -0.251 4.251 15 C 0.357 3.643 16 O -0.397 6.397 17 N -0.398 5.398 18 C 0.048 3.952 19 C 0.020 3.980 20 C -0.233 4.233 21 C -0.020 4.020 22 N -0.237 5.237 23 C 0.005 3.995 24 N -0.219 5.219 25 H 0.097 0.903 26 H 0.124 0.876 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.226 0.774 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.169 0.831 34 H 0.187 0.813 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 9.617 -8.058 7.297 14.515 hybrid contribution 0.636 1.385 0.424 1.582 sum 10.254 -6.673 7.721 14.466 Atomic orbital electron populations 1.69544 1.08117 1.30283 1.34055 1.26305 0.94908 1.01471 0.91424 0.86391 0.80987 0.79757 0.79401 1.19414 1.21681 1.16607 1.19951 0.90049 0.96090 1.36258 0.86727 1.17547 0.93444 0.89328 0.88286 1.21191 0.94298 1.04929 1.03930 1.20748 0.93891 0.96684 0.97047 1.20299 0.97758 1.02949 1.06077 1.20771 0.93411 0.96042 0.95854 1.19393 0.92428 1.07086 1.06210 1.18361 0.86490 0.79860 0.79603 1.90785 1.14165 1.71350 1.63421 1.45918 1.11363 1.33990 1.48539 1.20000 0.91929 0.88879 0.94360 1.21874 0.93614 0.91846 0.90688 1.22906 0.99354 1.02653 0.98378 1.23260 0.91898 0.88283 0.98537 1.68418 1.26912 1.20673 1.07707 1.25037 0.87955 0.97120 0.89426 1.68326 1.13997 1.04059 1.35560 0.90264 0.87617 0.88473 0.88487 0.88870 0.77358 0.89607 0.89760 0.83071 0.81342 0.78640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.61 13.92 55.56 0.77 -20.84 16 2 C 0.08 2.09 5.50 -17.30 -0.10 2.00 16 3 Si 0.91 20.60 24.48 -169.99 -4.16 16.44 16 4 H -0.27 -5.78 6.71 56.52 0.38 -5.40 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.24 -5.62 6.67 56.52 0.38 -5.25 16 7 C -0.40 -11.02 8.08 -37.81 -0.31 -11.33 16 8 H 0.12 3.52 6.37 -52.49 -0.33 3.19 16 9 C 0.12 3.02 5.04 -106.54 -0.54 2.48 16 10 C -0.22 -5.24 6.93 -38.89 -0.27 -5.51 16 11 C -0.07 -1.33 10.01 -39.60 -0.40 -1.73 16 12 C -0.25 -4.88 10.03 -39.37 -0.39 -5.28 16 13 C -0.04 -0.83 9.52 -39.22 -0.37 -1.20 16 14 C -0.25 -5.70 5.92 -104.37 -0.62 -6.31 16 15 C 0.56 12.54 7.72 -12.52 -0.10 12.45 16 16 O -0.52 -13.55 13.68 5.27 0.07 -13.48 16 17 N -0.74 -12.62 5.50 -62.57 -0.34 -12.96 16 18 C 0.17 2.53 6.03 -5.20 -0.03 2.50 16 19 C 0.17 2.06 6.19 -82.24 -0.51 1.55 16 20 C -0.21 -2.05 9.84 -39.32 -0.39 -2.43 16 21 C 0.15 1.31 11.30 -17.20 -0.19 1.11 16 22 N -0.52 -5.59 10.44 -14.59 -0.15 -5.75 16 23 C 0.29 3.16 12.28 -92.16 -1.13 2.03 16 24 N -0.51 -6.51 10.38 -10.80 -0.11 -6.62 16 25 H 0.29 6.99 8.29 -40.82 -0.34 6.65 16 26 H 0.11 2.43 4.88 -52.48 -0.26 2.17 16 27 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 28 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.09 1.52 6.43 -52.49 -0.34 1.18 16 30 H 0.39 5.94 6.52 -40.82 -0.27 5.67 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 33 H 0.15 1.16 8.06 -52.48 -0.42 0.73 16 34 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 302.27 15.07 4.56 4.56 Total: -1.00 -31.53 302.27 -8.04 -39.57 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -3.33 Total: 8.75 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -5.34 Total: -9.67 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.17 Total: -46.17 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.07 Total: -13.48 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.16 Total: 16.44 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.53 -8.04 -39.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297510939.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.515 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds