Wall clock time and date at job start Tue Mar 31 2020 05:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86801 * 120.00355 * 2 1 4 4 H 1.48501 * 109.46812 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46811 * 119.99904 * 3 2 1 6 6 H 1.48494 * 109.47318 * 240.00269 * 3 2 1 7 7 C 1.39950 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99963 * 154.89726 * 7 2 1 9 9 C 1.41401 * 119.99984 * 334.90243 * 7 2 1 10 10 C 1.40731 * 120.24030 * 334.88694 * 9 7 2 11 11 C 1.37601 * 119.74280 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24715 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50150 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24832 * 359.67272 * 13 12 11 15 15 C 1.50700 * 120.12929 * 180.32476 * 14 13 12 16 16 C 1.50707 * 109.46758 * 265.29676 * 15 14 13 17 17 O 1.21278 * 120.00045 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99855 * 179.97438 * 16 15 14 19 19 C 1.39587 * 119.99812 * 174.38135 * 18 16 15 20 20 C 1.39635 * 121.08988 * 334.12761 * 19 18 16 21 21 C 1.38320 * 117.88931 * 179.78510 * 20 19 18 22 22 N 1.32053 * 119.92870 * 0.50016 * 21 20 19 23 23 N 1.28305 * 122.37664 * 359.73897 * 22 21 20 24 24 C 1.31814 * 122.26009 * 0.02562 * 23 22 21 25 25 H 0.97003 * 120.00455 * 174.79722 * 1 2 3 26 26 H 1.07999 * 120.12995 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.87637 * 180.02562 * 11 10 9 28 28 H 1.07994 * 119.74802 * 179.97438 * 12 11 10 29 29 H 1.07997 * 119.87820 * 179.97438 * 13 12 11 30 30 H 1.08998 * 109.47535 * 25.29522 * 15 14 13 31 31 H 1.08999 * 109.47382 * 145.30404 * 15 14 13 32 32 H 0.97006 * 120.00521 * 354.38623 * 18 16 15 33 33 H 1.08003 * 121.05888 * 359.97438 * 20 19 18 34 34 H 1.08003 * 120.02930 * 180.23697 * 21 20 19 35 35 H 1.07999 * 120.14251 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7464 0.0006 5 1 3.0960 1.6962 1.2125 6 1 3.0960 1.6964 -1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0114 -1.2560 -0.3974 9 6 1.4010 -2.3790 0.5184 10 6 0.3780 -2.2784 1.4795 11 6 -0.2051 -3.4207 1.9779 12 6 0.2120 -4.6674 1.5370 13 6 1.2195 -4.7784 0.5915 14 6 1.8127 -3.6491 0.0746 15 6 2.9027 -3.7727 -0.9587 16 6 4.2467 -3.7369 -0.2777 17 8 4.3128 -3.6227 0.9279 18 7 5.3751 -3.8327 -1.0084 19 6 6.6193 -3.6821 -0.3939 20 6 6.7592 -2.9358 0.7779 21 6 8.0219 -2.8337 1.3332 22 7 9.0483 -3.4244 0.7488 23 7 8.9249 -4.1069 -0.3306 24 6 7.7636 -4.2665 -0.9332 25 1 -0.4851 -0.8366 -0.0762 26 1 0.0524 -1.3084 1.8252 27 1 -0.9907 -3.3460 2.7153 28 1 -0.2510 -5.5587 1.9340 29 1 1.5368 -5.7545 0.2555 30 1 2.7914 -4.7160 -1.4933 31 1 2.8306 -2.9446 -1.6638 32 1 5.3226 -4.0062 -1.9614 33 1 5.9079 -2.4559 1.2378 34 1 8.1689 -2.2681 2.2414 35 1 7.6990 -4.8480 -1.8410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528449481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:42 Heat of formation + Delta-G solvation = 34.688018 kcal Electronic energy + Delta-G solvation = -21214.356917 eV Core-core repulsion = 17984.243807 eV Total energy + Delta-G solvation = -3230.113110 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23423 -39.61105 -37.78280 -35.34829 -33.97504 -32.65555 -32.23024 -30.96620 -29.32967 -27.18990 -25.15681 -24.68190 -23.95823 -21.11558 -21.03409 -19.90635 -18.34145 -17.72310 -17.45968 -16.77252 -16.15905 -15.31985 -15.03095 -14.77958 -14.59558 -14.23324 -14.10144 -13.69115 -13.64620 -13.23490 -12.44761 -12.15013 -11.91435 -11.70414 -11.33060 -11.20184 -10.98081 -10.85828 -10.58319 -10.47660 -10.26310 -10.07702 -9.79181 -9.50015 -9.36931 -9.07355 -8.69691 -7.69217 -7.63096 -7.24070 -4.55659 0.79493 0.93115 2.53677 2.74418 2.80809 3.03070 3.08269 3.20477 3.28778 3.64452 3.92941 4.13597 4.42784 4.46710 4.54838 4.92410 5.18680 5.28985 5.46378 5.49964 5.67455 5.76607 5.92020 6.04551 6.11056 6.16100 6.24425 6.46927 6.55219 6.88388 7.07784 7.23670 7.30956 7.57841 7.70112 7.72319 7.84064 8.07933 8.21390 8.24606 8.64568 8.72841 8.80166 9.96536 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.005623 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.195973 B = 4978.482382 C = 6169.845739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.041 3.959 3 Si 1.058 2.942 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.071 0.929 9 C 0.117 3.883 10 C -0.215 4.215 11 C -0.083 4.083 12 C -0.252 4.252 13 C -0.065 4.065 14 C -0.195 4.195 15 C -0.066 4.066 16 C 0.514 3.486 17 O -0.490 6.490 18 N -0.674 5.674 19 C 0.164 3.836 20 C -0.141 4.141 21 C 0.063 3.937 22 N -0.273 5.273 23 N -0.228 5.228 24 C 0.006 3.994 25 H 0.300 0.700 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.415 0.585 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.654 -3.902 -4.378 9.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.182 4.182 3 Si 0.882 3.118 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.089 0.911 9 C 0.114 3.886 10 C -0.235 4.235 11 C -0.102 4.102 12 C -0.272 4.272 13 C -0.084 4.084 14 C -0.197 4.197 15 C -0.105 4.105 16 C 0.303 3.697 17 O -0.360 6.360 18 N -0.320 5.320 19 C 0.055 3.945 20 C -0.173 4.173 21 C -0.099 4.099 22 N -0.118 5.118 23 N -0.069 5.069 24 C -0.162 4.162 25 H 0.114 0.886 26 H 0.124 0.876 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.252 0.748 33 H 0.187 0.813 34 H 0.190 0.810 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.939 -2.467 -3.434 9.889 hybrid contribution -1.511 -1.542 -0.470 2.210 sum 7.428 -4.009 -3.904 9.299 Atomic orbital electron populations 1.70461 1.08198 1.34373 1.28716 1.26933 0.95667 1.04179 0.91378 0.83723 0.75827 0.74204 0.78037 1.19714 1.19940 1.20198 1.20430 1.02504 0.94017 1.37585 0.91127 1.17382 0.90298 0.91704 0.89210 1.21162 1.03322 0.97063 1.01907 1.20641 0.98137 0.93211 0.98183 1.20281 1.04656 0.95903 1.06332 1.20365 0.95936 0.95760 0.96293 1.18915 1.02972 0.93680 1.04136 1.20271 0.88521 1.03190 0.98546 1.21793 0.85602 0.74273 0.88048 1.90681 1.86708 1.44250 1.14405 1.43908 1.03521 1.71661 1.12906 1.18960 0.87037 0.93790 0.94694 1.22691 1.00411 0.97792 0.96410 1.24221 0.89165 0.96474 1.00050 1.72865 1.28524 1.06611 1.03758 1.72857 1.21728 1.09528 1.02824 1.24114 0.89260 1.00214 1.02630 0.88590 0.87625 0.89245 0.89327 0.89526 0.89896 0.87863 0.74838 0.81310 0.80961 0.81264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.11 12.32 55.55 0.68 -19.42 16 2 C 0.04 0.98 4.95 -17.34 -0.09 0.90 16 3 Si 1.06 20.81 30.00 -169.99 -5.10 15.71 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.52 -12.68 8.09 -37.74 -0.31 -12.98 16 8 H 0.07 1.67 6.72 -52.49 -0.35 1.32 16 9 C 0.12 2.89 5.31 -106.82 -0.57 2.32 16 10 C -0.22 -5.36 7.93 -38.87 -0.31 -5.67 16 11 C -0.08 -1.90 10.02 -39.66 -0.40 -2.29 16 12 C -0.25 -5.49 10.05 -39.29 -0.39 -5.89 16 13 C -0.07 -1.39 9.66 -39.66 -0.38 -1.77 16 14 C -0.20 -4.29 4.43 -103.91 -0.46 -4.75 16 15 C -0.07 -1.12 5.18 -29.03 -0.15 -1.27 16 16 C 0.51 8.70 7.29 -10.98 -0.08 8.62 16 17 O -0.49 -10.29 13.36 5.56 0.07 -10.22 16 18 N -0.67 -8.51 5.37 -9.65 -0.05 -8.56 16 19 C 0.16 2.23 6.46 -83.40 -0.54 1.69 16 20 C -0.14 -2.10 8.86 -39.03 -0.35 -2.45 16 21 C 0.06 0.86 11.30 -17.43 -0.20 0.66 16 22 N -0.27 -4.12 11.50 30.51 0.35 -3.77 16 23 N -0.23 -3.33 11.49 30.68 0.35 -2.98 16 24 C 0.01 0.08 11.26 -17.15 -0.19 -0.12 16 25 H 0.30 7.78 6.60 -40.82 -0.27 7.51 16 26 H 0.11 2.72 6.45 -52.49 -0.34 2.38 16 27 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 31 H 0.10 1.73 7.05 -51.93 -0.37 1.36 16 32 H 0.42 3.52 8.81 -40.82 -0.36 3.16 16 33 H 0.17 2.83 6.07 -52.48 -0.32 2.51 16 34 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -30.23 306.20 -6.82 -37.05 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -3.33 Total: 10.58 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -4.41 Total: -23.00 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 1.34 Total: -34.73 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.10 Total: 15.71 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.23 -6.82 -37.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528449481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.735 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds