Wall clock time and date at job start Tue Mar 31 2020 05:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86801 * 120.00355 * 2 1 4 4 H 1.48501 * 109.46812 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.46811 * 119.99904 * 3 2 1 6 6 H 1.48494 * 109.47318 * 240.00269 * 3 2 1 7 7 C 1.39950 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99963 * 154.89726 * 7 2 1 9 9 C 1.41401 * 119.99984 * 334.90243 * 7 2 1 10 10 C 1.40731 * 120.24030 * 334.88694 * 9 7 2 11 11 C 1.37601 * 119.74280 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24715 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50150 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24832 * 359.67272 * 13 12 11 15 15 C 1.50700 * 120.12929 * 180.32476 * 14 13 12 16 16 C 1.50707 * 109.46758 * 265.29676 * 15 14 13 17 17 O 1.21278 * 120.00045 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99855 * 179.97438 * 16 15 14 19 19 C 1.39587 * 119.99812 * 174.38135 * 18 16 15 20 20 C 1.39635 * 121.08988 * 334.12761 * 19 18 16 21 21 C 1.38320 * 117.88931 * 179.78510 * 20 19 18 22 22 N 1.32053 * 119.92870 * 0.50016 * 21 20 19 23 23 N 1.28305 * 122.37664 * 359.73897 * 22 21 20 24 24 C 1.31814 * 122.26009 * 0.02562 * 23 22 21 25 25 H 0.97003 * 120.00455 * 174.79722 * 1 2 3 26 26 H 1.07999 * 120.12995 * 359.97438 * 10 9 7 27 27 H 1.07998 * 119.87637 * 180.02562 * 11 10 9 28 28 H 1.07994 * 119.74802 * 179.97438 * 12 11 10 29 29 H 1.07997 * 119.87820 * 179.97438 * 13 12 11 30 30 H 1.08998 * 109.47535 * 25.29522 * 15 14 13 31 31 H 1.08999 * 109.47382 * 145.30404 * 15 14 13 32 32 H 0.97006 * 120.00521 * 354.38623 * 18 16 15 33 33 H 1.08003 * 121.05888 * 359.97438 * 20 19 18 34 34 H 1.08003 * 120.02930 * 180.23697 * 21 20 19 35 35 H 1.07999 * 120.14251 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7464 0.0006 5 1 3.0960 1.6962 1.2125 6 1 3.0960 1.6964 -1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0114 -1.2560 -0.3974 9 6 1.4010 -2.3790 0.5184 10 6 0.3780 -2.2784 1.4795 11 6 -0.2051 -3.4207 1.9779 12 6 0.2120 -4.6674 1.5370 13 6 1.2195 -4.7784 0.5915 14 6 1.8127 -3.6491 0.0746 15 6 2.9027 -3.7727 -0.9587 16 6 4.2467 -3.7369 -0.2777 17 8 4.3128 -3.6227 0.9279 18 7 5.3751 -3.8327 -1.0084 19 6 6.6193 -3.6821 -0.3939 20 6 6.7592 -2.9358 0.7779 21 6 8.0219 -2.8337 1.3332 22 7 9.0483 -3.4244 0.7488 23 7 8.9249 -4.1069 -0.3306 24 6 7.7636 -4.2665 -0.9332 25 1 -0.4851 -0.8366 -0.0762 26 1 0.0524 -1.3084 1.8252 27 1 -0.9907 -3.3460 2.7153 28 1 -0.2510 -5.5587 1.9340 29 1 1.5368 -5.7545 0.2555 30 1 2.7914 -4.7160 -1.4933 31 1 2.8306 -2.9446 -1.6638 32 1 5.3226 -4.0062 -1.9614 33 1 5.9079 -2.4559 1.2378 34 1 8.1689 -2.2681 2.2414 35 1 7.6990 -4.8480 -1.8410 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528449481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:42 Heat of formation + Delta-G solvation = 15.837726 kcal Electronic energy + Delta-G solvation = -21215.174327 eV Core-core repulsion = 17984.243807 eV Total energy + Delta-G solvation = -3230.930520 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.34838 -40.91763 -39.44643 -36.58494 -35.75607 -33.90903 -33.53067 -32.20567 -31.10651 -28.71228 -26.89615 -25.79092 -25.12098 -22.83821 -22.50075 -21.39305 -19.77856 -19.21760 -18.60973 -17.85916 -17.35545 -16.82681 -16.58226 -16.07228 -15.98823 -15.65747 -15.54707 -15.22165 -14.95607 -14.38186 -14.18701 -13.87300 -13.58004 -13.02901 -12.97487 -12.64297 -12.49712 -12.25737 -12.01102 -11.90677 -11.51547 -11.48940 -11.22833 -11.14947 -10.85289 -10.60216 -9.81637 -9.46322 -9.44109 -9.06826 -6.41364 -0.32115 -0.08480 0.86662 0.98539 1.47459 1.52935 1.61470 1.74531 1.82961 2.30032 2.58779 2.71019 3.15552 3.41190 3.47756 3.60579 3.82950 4.03335 4.27561 4.30072 4.40103 4.46397 4.48747 4.55578 4.70304 4.83810 4.96319 5.05356 5.07127 5.31072 5.37292 5.48614 5.78006 5.83194 5.96845 6.05032 6.23851 6.28687 6.44017 6.83466 7.01602 7.02059 7.67294 8.08653 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.005623 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.195973 B = 4978.482382 C = 6169.845739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.006 3.994 3 Si 1.102 2.898 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.088 3.912 10 C -0.246 4.246 11 C -0.096 4.096 12 C -0.253 4.253 13 C -0.076 4.076 14 C -0.195 4.195 15 C -0.065 4.065 16 C 0.519 3.481 17 O -0.537 6.537 18 N -0.651 5.651 19 C 0.158 3.842 20 C -0.160 4.160 21 C 0.067 3.933 22 N -0.294 5.294 23 N -0.250 5.250 24 C 0.026 3.974 25 H 0.285 0.715 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.437 0.563 33 H 0.147 0.853 34 H 0.197 0.803 35 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.088 -5.423 -5.946 12.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.211 4.211 3 Si 0.921 3.079 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.567 4.567 8 H 0.091 0.909 9 C 0.086 3.914 10 C -0.265 4.265 11 C -0.114 4.114 12 C -0.272 4.272 13 C -0.094 4.094 14 C -0.197 4.197 15 C -0.104 4.104 16 C 0.309 3.691 17 O -0.412 6.412 18 N -0.299 5.299 19 C 0.049 3.951 20 C -0.192 4.192 21 C -0.096 4.096 22 N -0.137 5.137 23 N -0.090 5.090 24 C -0.143 4.143 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.134 0.866 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.278 0.722 33 H 0.165 0.835 34 H 0.214 0.786 35 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 10.408 -4.015 -5.056 12.247 hybrid contribution -1.968 -1.244 0.033 2.329 sum 8.440 -5.259 -5.022 11.140 Atomic orbital electron populations 1.70558 1.08983 1.33354 1.31477 1.28133 0.95692 1.07109 0.90156 0.83177 0.75006 0.70780 0.78944 1.19801 1.19839 1.17660 1.20547 1.02661 0.94650 1.38796 0.90890 1.17757 0.90741 0.93315 0.89627 1.21161 1.05028 0.96867 1.03470 1.20906 0.98603 0.93280 0.98632 1.20714 1.04361 0.96265 1.05820 1.20825 0.95501 0.97191 0.95906 1.19434 1.03373 0.92790 1.04095 1.20306 0.87147 1.05644 0.97337 1.21612 0.86464 0.73636 0.87417 1.90686 1.87385 1.46649 1.16434 1.43514 1.02206 1.70380 1.13756 1.19078 0.87628 0.93863 0.94527 1.22637 1.00243 0.98783 0.97494 1.24519 0.88342 0.96126 1.00580 1.72829 1.29180 1.07301 1.04408 1.72796 1.22943 1.10113 1.03130 1.24648 0.87559 0.98989 1.03111 0.90217 0.89964 0.87577 0.86575 0.86016 0.85569 0.87542 0.72154 0.83518 0.78644 0.76950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.20 12.32 21.83 0.27 -42.93 16 2 C 0.01 0.29 4.95 85.26 0.42 0.71 16 3 Si 1.10 42.38 30.00 68.60 2.06 44.44 16 4 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 6 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 7 C -0.54 -26.91 8.09 23.46 0.19 -26.73 16 8 H 0.07 3.49 6.72 -2.91 -0.02 3.47 16 9 C 0.09 4.44 5.31 -21.29 -0.11 4.33 16 10 C -0.25 -12.70 7.93 22.73 0.18 -12.52 16 11 C -0.10 -4.40 10.02 22.22 0.22 -4.18 16 12 C -0.25 -10.58 10.05 22.46 0.23 -10.36 16 13 C -0.08 -3.07 9.66 22.22 0.21 -2.86 16 14 C -0.20 -8.36 4.43 -19.41 -0.09 -8.44 16 15 C -0.07 -2.05 5.18 29.10 0.15 -1.90 16 16 C 0.52 16.55 7.29 87.66 0.64 17.19 16 17 O -0.54 -22.32 13.36 -3.02 -0.04 -22.36 16 18 N -0.65 -14.47 5.37 -302.83 -1.63 -16.09 16 19 C 0.16 3.92 6.46 38.51 0.25 4.16 16 20 C -0.16 -4.63 8.86 22.63 0.20 -4.43 16 21 C 0.07 1.76 11.30 84.68 0.96 2.72 16 22 N -0.29 -8.45 11.50 -57.37 -0.66 -9.11 16 23 N -0.25 -6.73 11.49 -56.85 -0.65 -7.38 16 24 C 0.03 0.54 11.26 84.96 0.96 1.50 16 25 H 0.29 15.59 6.60 -92.71 -0.61 14.98 16 26 H 0.08 4.52 6.45 -2.91 -0.02 4.50 16 27 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 28 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 29 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 30 H 0.13 2.86 8.05 -2.39 -0.02 2.84 16 31 H 0.11 3.34 7.05 -2.39 -0.02 3.32 16 32 H 0.44 5.56 8.81 -92.70 -0.82 4.74 16 33 H 0.15 5.01 6.07 -2.91 -0.02 4.99 16 34 H 0.20 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -68.30 306.20 4.24 -64.06 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.48 Total: 30.20 kcal Atomic # 6 Polarization: -45.22 SS G_CDS: 4.41 Total: -40.81 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -2.67 Total: -75.52 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.06 Total: 44.44 kcal Total: -68.30 4.24 -64.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528449481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.896 kcal (2) G-P(sol) polarization free energy of solvation -68.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds