Wall clock time and date at job start Tue Mar 31 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47403 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47174 * 119.99846 * 3 2 1 6 6 H 1.48498 * 109.47167 * 239.99890 * 3 2 1 7 7 C 1.37878 * 119.99558 * 180.27523 * 2 1 3 8 8 H 1.08001 * 119.99832 * 186.33220 * 7 2 1 9 9 C 1.50698 * 120.00348 * 6.34040 * 7 2 1 10 10 H 1.09001 * 109.47072 * 33.16623 * 9 7 2 11 11 C 1.50702 * 109.47423 * 153.16146 * 9 7 2 12 12 O 1.21277 * 119.99978 * 119.99846 * 11 9 7 13 13 N 1.34774 * 120.00235 * 300.00439 * 11 9 7 14 14 C 1.39574 * 120.00198 * 184.45746 * 13 11 9 15 15 C 1.39647 * 121.08909 * 325.38740 * 14 13 11 16 16 C 1.38312 * 117.88816 * 179.78046 * 15 14 13 17 17 N 1.32056 * 119.93078 * 0.50626 * 16 15 14 18 18 N 1.28301 * 122.37745 * 359.73142 * 17 16 15 19 19 C 1.31821 * 122.25707 * 0.02562 * 18 17 16 20 20 C 1.50699 * 109.46987 * 273.16443 * 9 7 2 21 21 C 1.38238 * 120.00097 * 306.20591 * 20 9 7 22 22 C 1.38228 * 119.99818 * 179.78841 * 21 20 9 23 23 C 1.38229 * 120.00301 * 0.44122 * 22 21 20 24 24 C 1.38230 * 120.00108 * 359.81382 * 23 22 21 25 25 C 1.38232 * 119.99816 * 126.48076 * 20 9 7 26 26 H 0.96998 * 120.00436 * 175.07254 * 1 2 3 27 27 H 0.97003 * 119.99524 * 4.45382 * 13 11 9 28 28 H 1.07995 * 121.05606 * 359.97438 * 15 14 13 29 29 H 1.08000 * 120.03592 * 180.23460 * 16 15 14 30 30 H 1.08002 * 120.13666 * 180.02562 * 19 18 17 31 31 H 1.08003 * 119.99683 * 0.02562 * 21 20 9 32 32 H 1.08005 * 119.99756 * 180.27766 * 22 21 20 33 33 H 1.08008 * 120.00253 * 179.83456 * 23 22 21 34 34 H 1.08000 * 120.00700 * 180.02562 * 24 23 22 35 35 H 1.07998 * 120.00239 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0044 -1.1941 -0.0057 8 1 3.0795 -1.1975 0.0974 9 6 1.2578 -2.4945 -0.1561 10 1 0.3889 -2.3426 -0.7964 11 6 2.1648 -3.5257 -0.7766 12 8 2.4190 -4.5489 -0.1773 13 7 2.6936 -3.3108 -1.9975 14 6 3.4575 -4.3043 -2.6120 15 6 4.2782 -5.1498 -1.8625 16 6 5.0030 -6.1143 -2.5388 17 7 4.9124 -6.2056 -3.8531 18 7 4.1634 -5.4277 -4.5459 19 6 3.4310 -4.4809 -3.9938 20 6 0.8056 -2.9736 1.1992 21 6 1.7223 -3.1129 2.2245 22 6 1.3067 -3.5482 3.4688 23 6 -0.0240 -3.8531 3.6855 24 6 -0.9399 -3.7189 2.6589 25 6 -0.5250 -3.2793 1.4156 26 1 -0.4851 -0.8369 -0.0722 27 1 2.5432 -2.4656 -2.4493 28 1 4.3424 -5.0557 -0.7886 29 1 5.6457 -6.7892 -1.9931 30 1 2.8122 -3.8454 -4.6099 31 1 2.7627 -2.8779 2.0542 32 1 2.0222 -3.6527 4.2711 33 1 -0.3483 -4.1958 4.6571 34 1 -1.9797 -3.9566 2.8282 35 1 -1.2406 -3.1744 0.6135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583530153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:21 Heat of formation + Delta-G solvation = 40.825716 kcal Electronic energy + Delta-G solvation = -21339.527854 eV Core-core repulsion = 18109.680894 eV Total energy + Delta-G solvation = -3229.846960 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.08805 -39.59243 -38.14185 -35.14935 -34.26687 -32.48333 -31.29777 -30.79222 -30.18574 -27.49269 -24.61857 -24.32946 -23.58290 -21.81799 -21.24620 -19.98815 -18.19116 -17.58862 -17.01813 -16.45595 -16.11034 -16.03088 -14.77372 -14.70779 -14.60588 -14.11257 -13.96783 -13.85774 -13.40473 -13.13561 -12.74456 -12.49911 -12.38996 -11.77481 -11.30834 -11.11759 -11.00284 -10.68808 -10.48591 -10.38078 -10.32172 -10.04158 -9.93469 -9.24613 -9.09227 -8.80005 -8.55273 -8.18496 -7.85078 -6.76779 -4.55869 0.90397 1.02608 2.11399 2.16132 3.05050 3.22662 3.25717 3.27173 3.43736 3.74114 4.23367 4.24316 4.53874 4.59788 4.70537 4.97062 5.08267 5.39743 5.52095 5.53806 5.60448 5.67507 5.75544 5.87579 6.02404 6.18915 6.24727 6.27399 6.38805 6.67292 6.70424 6.79463 7.13679 7.17998 7.34229 7.58029 7.60708 7.78445 7.96969 8.36862 8.54372 8.82085 9.17155 10.61769 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.006169 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.361533 B = 4537.551871 C = 5953.419233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.036 3.964 3 Si 1.068 2.932 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.604 4.604 8 H 0.060 0.940 9 C 0.049 3.951 10 H 0.071 0.929 11 C 0.535 3.465 12 O -0.534 6.534 13 N -0.662 5.662 14 C 0.166 3.834 15 C -0.138 4.138 16 C 0.058 3.942 17 N -0.274 5.274 18 N -0.230 5.230 19 C 0.011 3.989 20 C -0.025 4.025 21 C -0.079 4.079 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.127 4.127 25 C -0.125 4.125 26 H 0.274 0.726 27 H 0.425 0.575 28 H 0.162 0.838 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 -4.813 -0.762 5.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.173 4.173 3 Si 0.895 3.105 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.642 4.642 8 H 0.079 0.921 9 C 0.027 3.973 10 H 0.089 0.911 11 C 0.327 3.673 12 O -0.410 6.410 13 N -0.307 5.307 14 C 0.057 3.943 15 C -0.169 4.169 16 C -0.105 4.105 17 N -0.118 5.118 18 N -0.071 5.071 19 C -0.157 4.157 20 C -0.027 4.027 21 C -0.097 4.097 22 C -0.149 4.149 23 C -0.161 4.161 24 C -0.145 4.145 25 C -0.143 4.143 26 H 0.086 0.914 27 H 0.263 0.737 28 H 0.180 0.820 29 H 0.188 0.812 30 H 0.189 0.811 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.656 -4.622 -1.594 6.105 hybrid contribution -0.437 -0.390 1.266 1.395 sum 3.218 -5.012 -0.328 5.965 Atomic orbital electron populations 1.70809 1.06850 1.31565 1.42583 1.25908 0.96282 1.02659 0.92436 0.83521 0.75033 0.74975 0.76953 1.20438 1.21130 1.20993 1.21537 0.94837 0.89217 1.58564 0.92148 1.18163 0.95342 0.92958 0.90805 0.91116 1.21857 0.79449 0.87222 0.78803 1.90607 1.60862 1.28748 1.60742 1.43704 1.49937 1.17101 1.20007 1.19003 0.90785 0.91597 0.92944 1.22569 0.94286 0.96471 1.03613 1.24166 0.97174 0.96620 0.92503 1.72845 1.14091 1.18556 1.06355 1.72859 1.02246 1.00872 1.31135 1.24236 1.00424 0.98835 0.92224 1.20026 0.92708 0.93190 0.96726 1.20781 0.99420 0.97329 0.92181 1.20993 0.95691 1.01201 0.97051 1.20861 0.93744 1.03044 0.98415 1.20905 0.98650 1.01330 0.93659 1.20964 0.95801 1.00520 0.97026 0.91417 0.73684 0.82016 0.81245 0.81110 0.86968 0.87261 0.87356 0.87238 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.97 13.63 55.43 0.76 -22.22 16 2 C 0.04 0.86 5.45 -17.82 -0.10 0.76 16 3 Si 1.07 21.87 29.91 -169.99 -5.08 16.79 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.29 -5.77 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.60 -13.94 7.40 -34.44 -0.26 -14.19 16 8 H 0.06 1.41 7.82 -52.49 -0.41 1.00 16 9 C 0.05 1.04 1.95 -94.08 -0.18 0.85 16 10 H 0.07 1.55 6.63 -51.93 -0.34 1.21 16 11 C 0.54 10.52 6.91 -10.99 -0.08 10.44 16 12 O -0.53 -11.33 12.94 5.56 0.07 -11.26 16 13 N -0.66 -10.83 5.27 -9.65 -0.05 -10.88 16 14 C 0.17 2.57 6.36 -83.40 -0.53 2.04 16 15 C -0.14 -2.11 8.86 -39.03 -0.35 -2.46 16 16 C 0.06 0.80 11.30 -17.43 -0.20 0.61 16 17 N -0.27 -4.33 11.50 30.51 0.35 -3.98 16 18 N -0.23 -3.64 11.49 30.68 0.35 -3.29 16 19 C 0.01 0.16 11.28 -17.15 -0.19 -0.04 16 20 C -0.03 -0.55 4.18 -104.62 -0.44 -0.99 16 21 C -0.08 -1.66 8.32 -39.59 -0.33 -1.99 16 22 C -0.13 -2.43 10.05 -39.59 -0.40 -2.82 16 23 C -0.14 -2.49 10.05 -39.59 -0.40 -2.88 16 24 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 25 C -0.12 -2.52 9.50 -39.58 -0.38 -2.90 16 26 H 0.27 7.01 6.48 -40.82 -0.26 6.74 16 27 H 0.42 6.25 8.64 -40.82 -0.35 5.90 16 28 H 0.16 2.62 6.38 -52.49 -0.33 2.28 16 29 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.11 2.38 7.89 -52.48 -0.41 1.96 16 32 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.11 2.08 7.96 -52.49 -0.42 1.66 16 LS Contribution 309.77 15.07 4.67 4.67 Total: -1.00 -28.55 309.77 -6.60 -35.15 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -3.45 Total: 11.28 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -4.21 Total: -16.27 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 1.41 Total: -40.36 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.08 Total: 16.79 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.55 -6.60 -35.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583530153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.976 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds