Wall clock time and date at job start Tue Mar 31 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47403 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47174 * 119.99846 * 3 2 1 6 6 H 1.48498 * 109.47167 * 239.99890 * 3 2 1 7 7 C 1.37878 * 119.99558 * 180.27523 * 2 1 3 8 8 H 1.08001 * 119.99832 * 186.33220 * 7 2 1 9 9 C 1.50698 * 120.00348 * 6.34040 * 7 2 1 10 10 H 1.09001 * 109.47072 * 33.16623 * 9 7 2 11 11 C 1.50702 * 109.47423 * 153.16146 * 9 7 2 12 12 O 1.21277 * 119.99978 * 119.99846 * 11 9 7 13 13 N 1.34774 * 120.00235 * 300.00439 * 11 9 7 14 14 C 1.39574 * 120.00198 * 184.45746 * 13 11 9 15 15 C 1.39647 * 121.08909 * 325.38740 * 14 13 11 16 16 C 1.38312 * 117.88816 * 179.78046 * 15 14 13 17 17 N 1.32056 * 119.93078 * 0.50626 * 16 15 14 18 18 N 1.28301 * 122.37745 * 359.73142 * 17 16 15 19 19 C 1.31821 * 122.25707 * 0.02562 * 18 17 16 20 20 C 1.50699 * 109.46987 * 273.16443 * 9 7 2 21 21 C 1.38238 * 120.00097 * 306.20591 * 20 9 7 22 22 C 1.38228 * 119.99818 * 179.78841 * 21 20 9 23 23 C 1.38229 * 120.00301 * 0.44122 * 22 21 20 24 24 C 1.38230 * 120.00108 * 359.81382 * 23 22 21 25 25 C 1.38232 * 119.99816 * 126.48076 * 20 9 7 26 26 H 0.96998 * 120.00436 * 175.07254 * 1 2 3 27 27 H 0.97003 * 119.99524 * 4.45382 * 13 11 9 28 28 H 1.07995 * 121.05606 * 359.97438 * 15 14 13 29 29 H 1.08000 * 120.03592 * 180.23460 * 16 15 14 30 30 H 1.08002 * 120.13666 * 180.02562 * 19 18 17 31 31 H 1.08003 * 119.99683 * 0.02562 * 21 20 9 32 32 H 1.08005 * 119.99756 * 180.27766 * 22 21 20 33 33 H 1.08008 * 120.00253 * 179.83456 * 23 22 21 34 34 H 1.08000 * 120.00700 * 180.02562 * 24 23 22 35 35 H 1.07998 * 120.00239 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0044 -1.1941 -0.0057 8 1 3.0795 -1.1975 0.0974 9 6 1.2578 -2.4945 -0.1561 10 1 0.3889 -2.3426 -0.7964 11 6 2.1648 -3.5257 -0.7766 12 8 2.4190 -4.5489 -0.1773 13 7 2.6936 -3.3108 -1.9975 14 6 3.4575 -4.3043 -2.6120 15 6 4.2782 -5.1498 -1.8625 16 6 5.0030 -6.1143 -2.5388 17 7 4.9124 -6.2056 -3.8531 18 7 4.1634 -5.4277 -4.5459 19 6 3.4310 -4.4809 -3.9938 20 6 0.8056 -2.9736 1.1992 21 6 1.7223 -3.1129 2.2245 22 6 1.3067 -3.5482 3.4688 23 6 -0.0240 -3.8531 3.6855 24 6 -0.9399 -3.7189 2.6589 25 6 -0.5250 -3.2793 1.4156 26 1 -0.4851 -0.8369 -0.0722 27 1 2.5432 -2.4656 -2.4493 28 1 4.3424 -5.0557 -0.7886 29 1 5.6457 -6.7892 -1.9931 30 1 2.8122 -3.8454 -4.6099 31 1 2.7627 -2.8779 2.0542 32 1 2.0222 -3.6527 4.2711 33 1 -0.3483 -4.1958 4.6571 34 1 -1.9797 -3.9566 2.8282 35 1 -1.2406 -3.1744 0.6135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583530153.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:21 Heat of formation + Delta-G solvation = 24.208713 kcal Electronic energy + Delta-G solvation = -21340.248421 eV Core-core repulsion = 18109.680894 eV Total energy + Delta-G solvation = -3230.567527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.35286 -41.04617 -39.60033 -36.53983 -35.98601 -33.66364 -32.87906 -32.15189 -31.66435 -29.06699 -26.05810 -25.70790 -25.01037 -23.31270 -22.68087 -21.50633 -19.66518 -19.04194 -18.36805 -17.78843 -17.48412 -17.47476 -16.23261 -16.05846 -15.97083 -15.64727 -15.38742 -15.33078 -14.89352 -14.42137 -14.29138 -14.08951 -13.89967 -13.28004 -12.96478 -12.62487 -12.47420 -12.00316 -11.94183 -11.87272 -11.84055 -11.35026 -11.15549 -10.97055 -10.63123 -10.52822 -9.87355 -9.67958 -9.39488 -8.66065 -6.44557 -0.34259 -0.10968 0.62352 0.66764 1.51146 1.60503 1.63136 1.81643 1.89699 2.53639 2.57090 3.02954 3.13873 3.17758 3.44772 3.52911 3.84129 4.07213 4.17292 4.18871 4.30428 4.35341 4.38934 4.46277 4.59331 4.79967 4.83438 4.87178 5.05633 5.20773 5.28936 5.39072 5.63449 5.68701 5.69671 5.99095 6.08672 6.21045 6.29229 6.50407 7.02442 7.34049 7.64461 8.73022 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.013573 B = 0.006169 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.361533 B = 4537.551871 C = 5953.419233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 1.106 2.894 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.596 4.596 8 H 0.054 0.946 9 C 0.048 3.952 10 H 0.058 0.942 11 C 0.538 3.462 12 O -0.553 6.553 13 N -0.651 5.651 14 C 0.150 3.850 15 C -0.145 4.145 16 C 0.069 3.931 17 N -0.291 5.291 18 N -0.248 5.248 19 C 0.024 3.976 20 C -0.050 4.050 21 C -0.105 4.105 22 C -0.133 4.133 23 C -0.139 4.139 24 C -0.128 4.128 25 C -0.147 4.147 26 H 0.266 0.734 27 H 0.431 0.569 28 H 0.152 0.848 29 H 0.206 0.794 30 H 0.202 0.798 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -5.331 -0.212 6.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.206 4.206 3 Si 0.929 3.071 4 H -0.214 1.214 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.633 4.633 8 H 0.072 0.928 9 C 0.027 3.973 10 H 0.076 0.924 11 C 0.329 3.671 12 O -0.430 6.430 13 N -0.297 5.297 14 C 0.042 3.958 15 C -0.176 4.176 16 C -0.095 4.095 17 N -0.134 5.134 18 N -0.088 5.088 19 C -0.145 4.145 20 C -0.051 4.051 21 C -0.123 4.123 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.146 4.146 25 C -0.166 4.166 26 H 0.077 0.923 27 H 0.271 0.729 28 H 0.170 0.830 29 H 0.223 0.777 30 H 0.219 0.781 31 H 0.117 0.883 32 H 0.155 0.845 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.119 -5.159 -1.091 6.691 hybrid contribution -0.560 -0.329 1.132 1.305 sum 3.559 -5.487 0.042 6.540 Atomic orbital electron populations 1.70890 1.07751 1.31178 1.45260 1.26951 0.96284 1.05440 0.91963 0.83038 0.74261 0.71860 0.77960 1.21415 1.20730 1.18599 1.21630 0.94485 0.90021 1.57200 0.92782 1.18081 0.95062 0.92949 0.91200 0.92409 1.21486 0.79391 0.86619 0.79633 1.90587 1.61552 1.29276 1.61578 1.43440 1.49568 1.17689 1.19007 1.19165 0.91229 0.91728 0.93711 1.22627 0.94710 0.96998 1.03291 1.24612 0.96701 0.96283 0.91869 1.72802 1.14456 1.18948 1.07158 1.72831 1.02866 1.01476 1.31669 1.24598 0.99752 0.98351 0.91756 1.20113 0.93654 0.94630 0.96750 1.20841 0.98788 0.99174 0.93531 1.21360 0.97088 0.99998 0.96690 1.21324 0.93003 1.01553 0.99844 1.21319 1.00507 0.99952 0.92806 1.21167 0.95413 1.01557 0.98418 0.92286 0.72874 0.83004 0.77744 0.78139 0.88342 0.84492 0.83466 0.84159 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.47 13.63 21.45 0.29 -48.18 16 2 C 0.00 -0.18 5.45 84.66 0.46 0.28 16 3 Si 1.11 43.96 29.91 68.60 2.05 46.01 16 4 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 7 C -0.60 -27.93 7.40 25.60 0.19 -27.74 16 8 H 0.05 2.55 7.82 -2.91 -0.02 2.53 16 9 C 0.05 2.13 1.95 -13.03 -0.03 2.10 16 10 H 0.06 2.65 6.63 -2.39 -0.02 2.63 16 11 C 0.54 21.47 6.91 87.66 0.61 22.08 16 12 O -0.55 -23.80 12.94 -3.02 -0.04 -23.84 16 13 N -0.65 -21.24 5.27 -302.85 -1.60 -22.84 16 14 C 0.15 4.53 6.36 38.51 0.24 4.77 16 15 C -0.14 -4.32 8.86 22.63 0.20 -4.12 16 16 C 0.07 1.78 11.30 84.68 0.96 2.74 16 17 N -0.29 -8.72 11.50 -57.38 -0.66 -9.38 16 18 N -0.25 -7.50 11.49 -56.85 -0.65 -8.15 16 19 C 0.02 0.64 11.28 84.96 0.96 1.60 16 20 C -0.05 -2.22 4.18 -19.87 -0.08 -2.30 16 21 C -0.11 -4.44 8.32 22.27 0.19 -4.26 16 22 C -0.13 -4.73 10.05 22.27 0.22 -4.50 16 23 C -0.14 -4.48 10.05 22.27 0.22 -4.26 16 24 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 25 C -0.15 -5.98 9.50 22.27 0.21 -5.77 16 26 H 0.27 14.05 6.48 -92.71 -0.60 13.45 16 27 H 0.43 12.61 8.64 -92.71 -0.80 11.81 16 28 H 0.15 4.90 6.38 -2.91 -0.02 4.88 16 29 H 0.21 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.20 3.96 8.06 -2.91 -0.02 3.94 16 31 H 0.10 4.29 7.89 -2.91 -0.02 4.27 16 32 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 35 H 0.11 4.29 7.96 -2.91 -0.02 4.27 16 Total: -1.00 -61.68 309.77 4.47 -57.21 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.50 Total: 32.74 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 4.58 Total: -23.57 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -2.62 Total: -88.55 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.04 Total: -23.84 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.05 Total: 46.01 kcal Total: -61.68 4.47 -57.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583530153.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.421 kcal (2) G-P(sol) polarization free energy of solvation -61.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds