Wall clock time and date at job start Tue Mar 31 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48496 * 109.47315 * 270.00272 * 3 2 1 5 5 H 1.48503 * 109.47227 * 30.00470 * 3 2 1 6 6 H 1.48497 * 109.47475 * 150.00221 * 3 2 1 7 7 C 1.40273 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00299 * 170.73544 * 7 2 1 9 9 C 1.40886 * 120.00177 * 350.74240 * 7 2 1 10 10 C 1.40710 * 120.32816 * 325.82197 * 9 7 2 11 11 C 1.37596 * 119.88212 * 179.97438 * 10 9 7 12 12 C 1.38815 * 120.57337 * 359.97438 * 11 10 9 13 13 C 1.38227 * 120.67597 * 0.02562 * 12 11 10 14 14 C 1.39221 * 120.09115 * 359.95205 * 13 12 11 15 15 C 1.47430 * 120.28120 * 180.02562 * 14 13 12 16 16 O 1.21617 * 119.99990 * 174.16798 * 15 14 13 17 17 N 1.34774 * 120.00197 * 354.16428 * 15 14 13 18 18 C 1.46499 * 119.99962 * 179.97438 * 17 15 14 19 19 C 1.50704 * 109.46838 * 180.02562 * 18 17 15 20 20 C 1.38603 * 120.07754 * 95.00330 * 19 18 17 21 21 C 1.38887 * 117.96727 * 180.02562 * 20 19 18 22 22 C 1.38609 * 117.96991 * 359.97438 * 21 20 19 23 23 N 1.31934 * 119.84500 * 359.97438 * 22 21 20 24 24 N 1.28344 * 122.18663 * 359.71278 * 23 22 21 25 25 H 0.97004 * 119.99993 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.05730 * 0.24416 * 10 9 7 27 27 H 1.08002 * 119.70970 * 179.97438 * 11 10 9 28 28 H 1.08005 * 119.66394 * 180.02562 * 12 11 10 29 29 H 1.08001 * 119.95495 * 179.97438 * 13 12 11 30 30 H 0.97004 * 119.99670 * 0.02562 * 17 15 14 31 31 H 1.09002 * 109.47560 * 300.00150 * 18 17 15 32 32 H 1.08996 * 109.47259 * 60.00517 * 18 17 15 33 33 H 1.07999 * 121.01682 * 359.97438 * 20 19 18 34 34 H 1.08002 * 121.01563 * 180.02562 * 21 20 19 35 35 H 1.08000 * 120.07496 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0464 -1.4000 5 1 1.4379 2.6526 0.7001 6 1 3.5379 1.4401 0.7000 7 6 2.0076 -1.2148 -0.0005 8 1 3.0771 -1.2209 -0.1511 9 6 1.3170 -2.4271 0.1952 10 6 0.1992 -2.4783 1.0484 11 6 -0.4688 -3.6670 1.2325 12 6 -0.0503 -4.8201 0.5826 13 6 1.0447 -4.7964 -0.2607 14 6 1.7408 -3.6087 -0.4675 15 6 2.9090 -3.5785 -1.3665 16 8 3.4487 -2.5203 -1.6270 17 7 3.3788 -4.7237 -1.8995 18 6 4.5392 -4.6937 -2.7933 19 6 4.8589 -6.0943 -3.2487 20 6 4.3599 -6.5638 -4.4535 21 6 4.6814 -7.8614 -4.8302 22 6 5.4818 -8.6063 -3.9783 23 7 5.9123 -8.0749 -2.8500 24 7 5.6201 -6.8739 -2.5046 25 1 -0.4850 0.8401 0.0004 26 1 -0.1364 -1.5851 1.5544 27 1 -1.3261 -3.7032 1.8883 28 1 -0.5858 -5.7452 0.7375 29 1 1.3604 -5.7005 -0.7600 30 1 2.9481 -5.5678 -1.6920 31 1 4.3142 -4.0726 -3.6603 32 1 5.3962 -4.2795 -2.2622 33 1 3.7394 -5.9401 -5.0798 34 1 4.3195 -8.2771 -5.7590 35 1 5.7530 -9.6189 -4.2379 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618015048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:17 Heat of formation + Delta-G solvation = 43.975461 kcal Electronic energy + Delta-G solvation = -20745.708777 eV Core-core repulsion = 17515.998400 eV Total energy + Delta-G solvation = -3229.710376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21527 -38.93050 -36.86818 -34.89801 -33.72051 -33.34363 -32.24622 -30.02069 -29.56882 -27.05201 -25.31705 -24.80704 -23.15862 -21.93329 -20.81747 -19.50503 -17.76387 -17.56113 -17.15683 -16.58035 -15.68084 -15.29496 -15.14064 -14.62886 -14.33076 -14.20347 -13.81959 -13.48623 -13.25741 -12.90719 -12.70749 -12.37352 -12.13687 -11.56855 -11.10342 -11.07834 -10.99849 -10.70395 -10.54898 -10.49333 -10.23847 -10.05380 -9.86155 -9.68532 -9.26448 -8.50911 -8.42170 -7.59803 -7.36504 -6.80284 -4.39234 0.57297 0.62447 2.34522 2.81228 3.10527 3.18132 3.23855 3.25767 3.74995 3.97934 4.04921 4.14733 4.27115 4.34943 4.46090 4.67773 4.72817 4.97684 5.37245 5.54038 5.62590 5.71284 5.94936 5.97299 5.98802 6.14556 6.28773 6.59123 6.94279 6.97905 7.12121 7.21279 7.45339 7.61425 7.87239 7.96885 8.16848 8.30702 8.52131 8.65605 8.81468 8.88934 9.34227 10.15039 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.004263 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.728504 B = 6565.824089 C = 7539.642670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.106 0.894 9 C 0.147 3.853 10 C -0.147 4.147 11 C -0.095 4.095 12 C -0.245 4.245 13 C -0.056 4.056 14 C -0.262 4.262 15 C 0.568 3.432 16 O -0.535 6.535 17 N -0.743 5.743 18 C 0.179 3.821 19 C 0.060 3.940 20 C -0.103 4.103 21 C -0.120 4.120 22 C 0.035 3.965 23 N -0.243 5.243 24 N -0.226 5.226 25 H 0.282 0.718 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.393 0.607 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 -11.016 -8.537 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.149 4.149 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.444 4.444 8 H 0.123 0.877 9 C 0.143 3.857 10 C -0.167 4.167 11 C -0.114 4.114 12 C -0.265 4.265 13 C -0.075 4.075 14 C -0.267 4.267 15 C 0.363 3.637 16 O -0.413 6.413 17 N -0.399 5.399 18 C 0.054 3.946 19 C -0.085 4.085 20 C -0.133 4.133 21 C -0.149 4.149 22 C -0.129 4.129 23 N -0.084 5.084 24 N -0.069 5.069 25 H 0.093 0.907 26 H 0.136 0.864 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.227 0.773 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.171 0.829 34 H 0.169 0.831 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.623 -10.243 -7.337 13.798 hybrid contribution -0.923 0.228 -1.495 1.771 sum 4.700 -10.015 -8.832 14.156 Atomic orbital electron populations 1.69715 1.07776 1.29603 1.34723 1.26121 0.94788 1.01793 0.92156 0.86144 0.80470 0.79755 0.79413 1.19315 1.20322 1.18257 1.20177 0.97405 0.89456 1.37369 0.87667 1.17465 0.89959 0.91260 0.87021 1.21366 0.98481 0.96374 1.00435 1.20799 0.98237 0.93569 0.98777 1.20277 1.01873 0.97390 1.06925 1.20630 0.95135 0.95035 0.96715 1.19392 1.02579 0.96262 1.08423 1.18426 0.83736 0.82124 0.79450 1.90687 1.59861 1.29466 1.61275 1.45970 1.32254 1.10629 1.51068 1.19875 0.91135 0.88351 0.95265 1.23057 0.94476 0.98374 0.92560 1.22422 0.97795 0.96343 0.96697 1.22457 0.96894 0.94497 1.01092 1.24373 0.94713 1.01834 0.91958 1.73101 1.16621 1.04595 1.14133 1.73065 1.09024 0.98572 1.26218 0.90703 0.86405 0.89053 0.89131 0.89476 0.77298 0.89948 0.89672 0.82856 0.83106 0.81103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.43 11.14 55.56 0.62 -19.81 16 2 C 0.07 1.78 5.25 -17.30 -0.09 1.69 16 3 Si 0.92 19.57 29.57 -169.99 -5.03 14.55 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.42 -11.38 7.67 -37.82 -0.29 -11.67 16 8 H 0.11 2.98 5.93 -52.49 -0.31 2.67 16 9 C 0.15 3.93 5.51 -106.54 -0.59 3.35 16 10 C -0.15 -3.73 8.63 -38.88 -0.34 -4.07 16 11 C -0.09 -2.14 10.01 -39.60 -0.40 -2.54 16 12 C -0.25 -5.24 10.03 -39.37 -0.39 -5.63 16 13 C -0.06 -1.21 9.52 -39.22 -0.37 -1.58 16 14 C -0.26 -6.38 5.92 -104.37 -0.62 -6.99 16 15 C 0.57 13.00 7.72 -12.52 -0.10 12.90 16 16 O -0.53 -13.79 13.59 5.26 0.07 -13.72 16 17 N -0.74 -13.19 5.50 -62.56 -0.34 -13.53 16 18 C 0.18 2.69 6.01 -5.19 -0.03 2.66 16 19 C 0.06 0.78 6.23 -82.41 -0.51 0.26 16 20 C -0.10 -0.98 9.85 -39.21 -0.39 -1.37 16 21 C -0.12 -0.91 10.21 -39.20 -0.40 -1.31 16 22 C 0.04 0.32 11.31 -17.37 -0.20 0.12 16 23 N -0.24 -3.23 11.50 30.55 0.35 -2.88 16 24 N -0.23 -3.35 11.43 33.60 0.38 -2.96 16 25 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 26 H 0.12 3.04 6.59 -52.49 -0.35 2.70 16 27 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 29 H 0.09 1.57 6.44 -52.49 -0.34 1.23 16 30 H 0.39 6.35 6.53 -40.82 -0.27 6.08 16 31 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 35 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -31.61 308.19 -7.36 -38.97 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -3.35 Total: 8.93 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -4.71 Total: -14.18 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 1.01 Total: -39.19 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.07 Total: -13.72 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.61 -7.36 -38.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618015048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.945 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds