Wall clock time and date at job start Tue Mar 31 2020 05:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86800 * 119.99445 * 2 1 4 4 H 1.48501 * 109.47332 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47292 * 119.99689 * 3 2 1 6 6 H 1.48504 * 109.46919 * 239.99671 * 3 2 1 7 7 C 1.40275 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99596 * 154.01049 * 7 2 1 9 9 C 1.40853 * 120.00114 * 334.01088 * 7 2 1 10 10 C 1.40716 * 120.33173 * 331.38722 * 9 7 2 11 11 C 1.37582 * 119.88421 * 180.02562 * 10 9 7 12 12 C 1.38846 * 120.57672 * 359.97438 * 11 10 9 13 13 C 1.38186 * 120.68438 * 0.02562 * 12 11 10 14 14 C 1.39262 * 120.08691 * 359.71680 * 13 12 11 15 15 C 1.47365 * 120.28777 * 180.29837 * 14 13 12 16 16 O 1.21636 * 120.00386 * 132.08047 * 15 14 13 17 17 N 1.34779 * 119.99823 * 312.08829 * 15 14 13 18 18 C 1.46817 * 125.57354 * 4.08841 * 17 15 14 19 19 C 1.53799 * 104.41706 * 179.97438 * 18 17 15 20 20 N 1.46975 * 104.82181 * 0.30314 * 19 18 17 21 21 N 1.40323 * 142.20602 * 179.80723 * 20 19 18 22 22 C 1.30737 * 108.31470 * 180.02562 * 21 20 19 23 23 C 1.39558 * 108.45805 * 0.02562 * 22 21 20 24 24 C 1.35222 * 109.64695 * 359.81586 * 20 19 18 25 25 H 0.97000 * 119.99557 * 175.51240 * 1 2 3 26 26 H 1.08001 * 120.05685 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.70650 * 179.97438 * 11 10 9 28 28 H 1.08003 * 119.65510 * 179.97438 * 12 11 10 29 29 H 1.07998 * 119.95347 * 179.97438 * 13 12 11 30 30 H 1.08993 * 110.44120 * 298.77518 * 18 17 15 31 31 H 1.08996 * 110.43898 * 61.30436 * 18 17 15 32 32 H 1.09002 * 110.52148 * 241.39046 * 19 18 17 33 33 H 1.09000 * 110.30373 * 119.11200 * 19 18 17 34 34 H 1.08000 * 125.76950 * 180.02562 * 22 21 20 35 35 H 1.07998 * 126.04505 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 1.2751 2.7465 -0.0006 5 1 3.0939 1.6966 1.2126 6 1 3.0940 1.6965 -1.2125 7 6 2.0077 -1.2148 0.0005 8 1 3.0058 -1.2621 -0.4093 9 6 1.4104 -2.3727 0.5356 10 6 0.4530 -2.2691 1.5616 11 6 -0.1243 -3.4063 2.0779 12 6 0.2288 -4.6593 1.5950 13 6 1.1662 -4.7885 0.5880 14 6 1.7642 -3.6558 0.0414 15 6 2.7596 -3.7881 -1.0372 16 8 2.6721 -3.0962 -2.0338 17 7 3.7668 -4.6759 -0.9195 18 6 3.9419 -5.6275 0.1847 19 6 5.2288 -6.3919 -0.1689 20 7 5.6782 -5.8043 -1.4390 21 7 6.6935 -5.8920 -2.4036 22 6 6.4522 -5.0075 -3.3356 23 6 5.2813 -4.3245 -3.0041 24 6 4.8157 -4.8358 -1.8222 25 1 -0.4849 -0.8375 -0.0657 26 1 0.1725 -1.2987 1.9438 27 1 -0.8584 -3.3235 2.8656 28 1 -0.2335 -5.5421 2.0114 29 1 1.4323 -5.7689 0.2216 30 1 4.0604 -5.0969 1.1293 31 1 3.0952 -6.3121 0.2350 32 1 5.0198 -7.4542 -0.2954 33 1 5.9816 -6.2435 0.6052 34 1 7.0569 -4.8347 -4.2136 35 1 4.8229 -3.5331 -3.5785 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001640301619.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:07 Heat of formation + Delta-G solvation = 70.490404 kcal Electronic energy + Delta-G solvation = -21749.222597 eV Core-core repulsion = 18520.661994 eV Total energy + Delta-G solvation = -3228.560602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.106 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.10737 -40.80544 -38.97243 -37.88566 -35.91162 -33.72855 -32.14909 -31.43552 -30.39419 -29.42529 -27.28414 -25.42279 -24.16808 -23.15284 -22.57184 -21.86128 -20.44113 -19.68783 -18.03662 -17.87741 -17.43181 -16.81950 -16.55073 -16.33604 -15.87045 -15.62540 -15.04227 -14.81409 -14.71721 -14.47312 -14.23589 -14.09645 -13.95890 -13.31104 -13.24930 -13.15834 -12.78630 -12.56411 -12.04287 -11.98603 -11.83058 -11.61723 -11.51673 -10.99054 -10.93169 -9.93220 -9.71505 -9.62420 -9.32663 -9.09388 -6.57931 0.28407 0.73710 0.87135 0.90183 1.43602 1.56927 1.62832 1.72741 1.90033 2.06208 2.24471 2.58343 2.95589 3.41471 3.56950 3.76788 3.87480 4.07443 4.23584 4.30274 4.36700 4.42770 4.56652 4.60318 4.68863 4.81633 4.87638 4.97742 5.06598 5.30345 5.54476 5.64536 5.68119 5.70561 5.74701 5.88507 6.02728 6.20188 6.26064 6.65243 6.69500 6.75189 7.04277 7.90605 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016857 B = 0.006292 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.669931 B = 4449.095742 C = 5711.426705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.009 3.991 3 Si 1.108 2.892 4 H -0.261 1.261 5 H -0.256 1.256 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.105 3.895 10 C -0.228 4.228 11 C -0.065 4.065 12 C -0.238 4.238 13 C -0.041 4.041 14 C -0.277 4.277 15 C 0.597 3.403 16 O -0.551 6.551 17 N -0.553 5.553 18 C 0.086 3.914 19 C 0.124 3.876 20 N -0.412 5.412 21 N -0.290 5.290 22 C 0.080 3.920 23 C -0.307 4.307 24 C 0.280 3.720 25 H 0.286 0.714 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.231 0.769 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.848 -10.646 3.355 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.210 4.210 3 Si 0.924 3.076 4 H -0.184 1.184 5 H -0.180 1.180 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.102 3.898 10 C -0.247 4.247 11 C -0.084 4.084 12 C -0.257 4.257 13 C -0.059 4.059 14 C -0.282 4.282 15 C 0.391 3.609 16 O -0.427 6.427 17 N -0.282 5.282 18 C -0.035 4.035 19 C 0.004 3.996 20 N -0.200 5.200 21 N -0.111 5.111 22 C -0.105 4.105 23 C -0.340 4.340 24 C 0.058 3.942 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.145 0.855 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.126 0.874 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.247 0.753 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.296 -9.676 3.419 12.591 hybrid contribution -0.632 -0.646 -0.634 1.104 sum 6.664 -10.322 2.785 12.598 Atomic orbital electron populations 1.70514 1.08655 1.33269 1.29375 1.28362 0.95673 1.07162 0.89780 0.83135 0.75117 0.70351 0.78947 1.18441 1.17977 1.19726 1.20621 1.03083 0.95683 1.35777 0.92819 1.17669 0.90421 0.91640 0.90119 1.21128 1.04655 0.98071 1.00835 1.21170 0.96904 0.92583 0.97713 1.20772 1.04616 0.97106 1.03199 1.21083 0.94910 0.95856 0.94068 1.19285 1.08958 0.95501 1.04486 1.18557 0.79587 0.76180 0.86571 1.90715 1.74870 1.44331 1.32736 1.45694 1.22197 1.37648 1.22650 1.23167 0.98683 0.91097 0.90540 1.22919 0.95136 1.00234 0.81301 1.50240 1.19255 1.29972 1.20564 1.77346 1.08461 1.25379 0.99942 1.24209 0.95249 0.92156 0.98867 1.20740 1.03080 1.10962 0.99212 1.19701 0.87416 0.93585 0.93533 0.90214 0.88916 0.85528 0.84201 0.84907 0.87403 0.85787 0.85013 0.85869 0.75297 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.96 12.47 21.88 0.27 -42.68 16 2 C 0.01 0.46 4.90 85.37 0.42 0.88 16 3 Si 1.11 45.01 30.01 68.60 2.06 47.07 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.52 -29.16 7.78 23.41 0.18 -28.98 16 8 H 0.05 3.17 7.10 -2.91 -0.02 3.15 16 9 C 0.11 5.45 5.24 -21.11 -0.11 5.34 16 10 C -0.23 -10.77 7.99 22.72 0.18 -10.59 16 11 C -0.07 -2.51 10.01 22.26 0.22 -2.29 16 12 C -0.24 -8.11 10.03 22.40 0.22 -7.89 16 13 C -0.04 -1.48 8.50 22.50 0.19 -1.29 16 14 C -0.28 -12.74 5.44 -19.70 -0.11 -12.85 16 15 C 0.60 28.04 6.66 86.65 0.58 28.62 16 16 O -0.55 -30.76 15.62 -4.15 -0.06 -30.82 16 17 N -0.55 -20.62 3.13 -638.40 -2.00 -22.62 16 18 C 0.09 2.08 5.98 86.59 0.52 2.59 16 19 C 0.12 2.45 7.99 86.56 0.69 3.14 16 20 N -0.41 -12.63 4.91 -342.10 -1.68 -14.31 16 21 N -0.29 -8.98 12.70 -57.28 -0.73 -9.70 16 22 C 0.08 2.32 11.99 85.17 1.02 3.34 16 23 C -0.31 -11.34 10.44 22.28 0.23 -11.11 16 24 C 0.28 10.45 7.56 131.58 0.99 11.45 16 25 H 0.29 15.94 6.83 -92.71 -0.63 15.30 16 26 H 0.09 4.62 6.76 -2.91 -0.02 4.60 16 27 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 28 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 29 H 0.13 3.74 6.01 -2.91 -0.02 3.72 16 30 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.12 2.32 6.00 -2.39 -0.01 2.30 16 32 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.23 4.35 8.06 -2.91 -0.02 4.32 16 35 H 0.13 5.27 7.96 -2.91 -0.02 5.25 16 Total: -1.00 -73.18 299.92 4.36 -68.82 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 1.26 Total: 23.89 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 5.24 Total: -19.63 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -4.13 Total: -89.32 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.06 Total: -30.82 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.06 Total: 47.07 kcal Total: -73.18 4.36 -68.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640301619.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.307 kcal (2) G-P(sol) polarization free energy of solvation -73.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds