Wall clock time and date at job start Tue Mar 31 2020 05:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47448 * 287.06992 * 3 2 1 5 5 C 1.46902 * 111.00001 * 185.02696 * 4 3 2 6 6 H 1.09000 * 109.47169 * 329.91787 * 5 4 3 7 7 C 1.53004 * 109.46762 * 209.92023 * 5 4 3 8 8 N 1.46507 * 109.47079 * 55.00773 * 7 5 4 9 9 C 1.34774 * 119.99957 * 179.97438 * 8 7 5 10 10 O 1.21277 * 120.00142 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.99683 * 179.97438 * 9 8 7 12 12 S 1.81002 * 109.46751 * 180.02562 * 11 9 8 13 13 C 1.76205 * 99.99962 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99606 * 359.97438 * 13 12 11 15 15 C 1.38796 * 119.99924 * 179.97438 * 13 12 11 16 16 N 1.31624 * 120.00043 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99732 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46941 * 60.00507 * 17 15 13 19 19 H 1.48497 * 109.46864 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47540 * 300.00209 * 17 15 13 21 21 C 1.52998 * 109.47213 * 89.92684 * 5 4 3 22 22 C 1.52997 * 117.51566 * 346.24199 * 21 5 4 23 23 C 1.52998 * 60.00224 * 107.48489 * 22 21 5 24 24 H 1.09004 * 109.46951 * 167.06951 * 3 2 1 25 25 H 1.08999 * 109.47303 * 47.07144 * 3 2 1 26 26 H 1.00897 * 110.99942 * 308.98432 * 4 3 2 27 27 H 1.08999 * 109.47131 * 174.99612 * 7 5 4 28 28 H 1.08995 * 109.47401 * 295.00452 * 7 5 4 29 29 H 0.96996 * 119.99785 * 359.97438 * 8 7 5 30 30 H 1.08996 * 109.47289 * 299.99597 * 11 9 8 31 31 H 1.08995 * 109.46898 * 60.00178 * 11 9 8 32 32 H 0.97005 * 119.99745 * 179.97438 * 16 15 13 33 33 H 1.08997 * 115.54953 * 200.54492 * 21 5 4 34 34 H 1.08998 * 117.50092 * 214.97204 * 22 21 5 35 35 H 1.09008 * 117.50361 * 359.97438 * 22 21 5 36 36 H 1.09004 * 117.49679 * 252.51112 * 23 22 21 37 37 H 1.08993 * 117.50241 * 107.48557 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0979 -0.4057 1.3239 5 6 4.5614 -0.3021 1.3983 6 1 4.9885 -0.4751 0.4105 7 6 5.0976 -1.3494 2.3763 8 7 4.6256 -2.6776 1.9768 9 6 4.9758 -3.7619 2.6967 10 8 5.6820 -3.6382 3.6748 11 6 4.4897 -5.1280 2.2860 12 16 5.1242 -6.3670 3.4430 13 6 4.4235 -7.8250 2.7445 14 1 3.8098 -7.7581 1.8583 15 6 4.6601 -9.0595 3.3333 16 7 5.4083 -9.1410 4.4131 17 14 3.9166 -10.6051 2.5932 18 1 4.4058 -10.7720 1.2010 19 1 4.3174 -11.7837 3.4028 20 1 2.4362 -10.4884 2.5871 21 6 4.9497 1.0956 1.8844 22 6 3.8629 2.1725 1.8809 23 6 4.3459 1.5774 3.2051 24 1 2.9708 1.0025 -0.2300 25 1 2.9716 -0.6991 -0.7524 26 1 2.6595 0.1360 2.0536 27 1 6.1874 -1.3328 2.3650 28 1 4.7411 -1.1242 3.3814 29 1 4.0611 -2.7766 1.1943 30 1 3.3999 -5.1447 2.2981 31 1 4.8455 -5.3532 1.2807 32 1 5.5734 -10.0037 4.8248 33 1 5.9682 1.4076 1.6532 34 1 4.1664 3.1930 1.6475 35 1 2.8710 1.8855 1.5318 36 1 3.6716 0.8987 3.7275 37 1 4.9671 2.2063 3.8427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690142636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:24 Heat of formation + Delta-G solvation = 22.778247 kcal Electronic energy + Delta-G solvation = -19078.141504 eV Core-core repulsion = 15982.955899 eV Total energy + Delta-G solvation = -3095.185605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.06508 -38.70851 -36.97315 -34.96252 -33.90229 -32.38872 -30.62892 -28.64054 -26.18858 -25.43286 -23.82314 -22.75243 -20.56664 -19.88011 -18.56641 -17.76868 -17.07569 -16.30327 -16.04980 -15.69652 -15.26521 -14.90173 -14.76729 -14.56825 -13.88040 -13.80336 -13.51648 -13.02496 -12.84550 -12.61952 -12.51806 -12.37512 -12.16863 -12.06521 -11.87674 -11.56688 -11.00602 -11.00283 -10.86660 -10.73333 -10.48299 -9.77904 -9.33275 -9.14664 -9.02244 -8.72824 -8.18348 -6.44733 -6.17593 -3.87512 2.21107 2.39442 3.04877 3.21277 3.23855 3.26563 3.30945 3.38363 3.40351 3.72971 3.89889 4.23938 4.24878 4.34030 4.38116 4.66021 4.69480 4.82407 4.97535 5.07826 5.15017 5.17439 5.28859 5.45059 5.53489 5.58458 5.64637 5.67486 5.90169 5.97879 6.22510 6.25966 6.59699 6.79871 7.15234 7.63402 7.88005 8.39203 8.74128 9.27694 10.89791 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.003222 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.037038 B = 8686.860218 C = 9676.551976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.204 3.796 3 C 0.148 3.852 4 N -0.679 5.679 5 C 0.107 3.893 6 H 0.098 0.902 7 C 0.138 3.862 8 N -0.726 5.726 9 C 0.531 3.469 10 O -0.523 6.523 11 C -0.152 4.152 12 S -0.062 6.062 13 C -0.535 4.535 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C -0.179 4.179 22 C -0.189 4.189 23 C -0.175 4.175 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.353 0.647 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.402 0.598 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.268 0.732 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 23.325 -9.689 25.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.115 4.115 3 C 0.017 3.983 4 N -0.313 5.313 5 C -0.003 4.003 6 H 0.116 0.884 7 C 0.013 3.987 8 N -0.381 5.381 9 C 0.317 3.683 10 O -0.398 6.398 11 C -0.303 4.303 12 S 0.165 5.835 13 C -0.684 4.684 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.504 5.504 17 Si 0.744 3.256 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.200 4.200 22 C -0.227 4.227 23 C -0.212 4.212 24 H 0.101 0.899 25 H 0.139 0.861 26 H 0.175 0.825 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.237 0.763 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.868 22.742 -8.063 24.201 hybrid contribution -1.037 -0.164 -1.886 2.159 sum -2.906 22.578 -9.949 24.843 Atomic orbital electron populations 1.81264 1.12988 1.08588 1.06791 1.28998 0.95056 0.93310 0.94167 1.19583 0.81573 1.02809 0.94319 1.60591 1.06098 1.61249 1.03411 1.21430 0.86353 0.92012 1.00490 0.88374 1.21153 0.98669 0.81268 0.97635 1.45771 1.54404 1.05676 1.32220 1.20264 0.79786 0.85572 0.82714 1.90695 1.36580 1.86222 1.26308 1.23513 1.04531 0.96294 1.05939 1.85366 1.66830 0.96477 1.34814 1.22842 1.36869 0.92846 1.15805 0.91008 1.24980 0.95037 0.98706 0.94836 1.70010 1.35743 1.25707 1.18906 0.86239 0.79421 0.80916 0.79009 1.19957 1.20849 1.19955 1.22973 0.99392 0.94942 1.02653 1.23143 0.98609 0.98539 1.02375 1.23020 1.03887 1.03579 0.90676 0.89924 0.86113 0.82531 0.91002 0.91501 0.76342 0.89294 0.89376 0.92179 0.86617 0.88277 0.88908 0.88164 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.79 18.54 42.15 0.78 -4.01 16 2 C 0.20 1.59 15.64 -20.76 -0.32 1.26 16 3 C 0.15 0.58 5.10 -6.61 -0.03 0.54 16 4 N -0.68 -3.80 5.51 -109.80 -0.61 -4.41 16 5 C 0.11 0.59 2.61 -67.71 -0.18 0.41 16 6 H 0.10 0.40 7.78 -51.93 -0.40 -0.01 16 7 C 0.14 1.36 5.32 -4.04 -0.02 1.33 16 8 N -0.73 -9.00 5.39 -60.29 -0.32 -9.33 16 9 C 0.53 9.72 7.85 -10.98 -0.09 9.63 16 10 O -0.52 -11.74 15.86 5.56 0.09 -11.65 16 11 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 12 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 13 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 14 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 15 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 16 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 17 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 C -0.18 -0.84 5.79 -90.62 -0.52 -1.36 16 22 C -0.19 -0.79 8.94 -26.73 -0.24 -1.03 16 23 C -0.17 -0.95 9.30 -26.73 -0.25 -1.20 16 24 H 0.08 0.16 6.68 -51.93 -0.35 -0.19 16 25 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.35 2.09 5.67 -39.29 -0.22 1.87 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.76 7.49 -51.93 -0.39 0.37 16 29 H 0.40 4.04 8.14 -40.82 -0.33 3.71 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 32 H 0.27 7.58 8.31 -40.82 -0.34 7.25 16 33 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.37 5.11 -51.92 -0.27 0.10 16 36 H 0.10 0.62 7.30 -51.93 -0.38 0.25 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -36.29 332.93 -7.62 -43.92 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.84 Total: -0.25 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.23 Total: -6.32 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.58 Total: -43.37 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.29 -7.62 -43.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690142636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.695 kcal (2) G-P(sol) polarization free energy of solvation -36.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds