Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46898 * 109.47448 * 287.06992 * 3 2 1 5 5 C 1.46902 * 111.00001 * 185.02696 * 4 3 2 6 6 H 1.09000 * 109.47169 * 329.91787 * 5 4 3 7 7 C 1.53004 * 109.46762 * 209.92023 * 5 4 3 8 8 N 1.46507 * 109.47079 * 55.00773 * 7 5 4 9 9 C 1.34774 * 119.99957 * 179.97438 * 8 7 5 10 10 O 1.21277 * 120.00142 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.99683 * 179.97438 * 9 8 7 12 12 S 1.81002 * 109.46751 * 180.02562 * 11 9 8 13 13 C 1.76205 * 99.99962 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99606 * 359.97438 * 13 12 11 15 15 C 1.38796 * 119.99924 * 179.97438 * 13 12 11 16 16 N 1.31624 * 120.00043 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99732 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46941 * 60.00507 * 17 15 13 19 19 H 1.48497 * 109.46864 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47540 * 300.00209 * 17 15 13 21 21 C 1.52998 * 109.47213 * 89.92684 * 5 4 3 22 22 C 1.52997 * 117.51566 * 346.24199 * 21 5 4 23 23 C 1.52998 * 60.00224 * 107.48489 * 22 21 5 24 24 H 1.09004 * 109.46951 * 167.06951 * 3 2 1 25 25 H 1.08999 * 109.47303 * 47.07144 * 3 2 1 26 26 H 1.00897 * 110.99942 * 308.98432 * 4 3 2 27 27 H 1.08999 * 109.47131 * 174.99612 * 7 5 4 28 28 H 1.08995 * 109.47401 * 295.00452 * 7 5 4 29 29 H 0.96996 * 119.99785 * 359.97438 * 8 7 5 30 30 H 1.08996 * 109.47289 * 299.99597 * 11 9 8 31 31 H 1.08995 * 109.46898 * 60.00178 * 11 9 8 32 32 H 0.97005 * 119.99745 * 179.97438 * 16 15 13 33 33 H 1.08997 * 115.54953 * 200.54492 * 21 5 4 34 34 H 1.08998 * 117.50092 * 214.97204 * 22 21 5 35 35 H 1.09008 * 117.50361 * 359.97438 * 22 21 5 36 36 H 1.09004 * 117.49679 * 252.51112 * 23 22 21 37 37 H 1.08993 * 117.50241 * 107.48557 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0979 -0.4057 1.3239 5 6 4.5614 -0.3021 1.3983 6 1 4.9885 -0.4751 0.4105 7 6 5.0976 -1.3494 2.3763 8 7 4.6256 -2.6776 1.9768 9 6 4.9758 -3.7619 2.6967 10 8 5.6820 -3.6382 3.6748 11 6 4.4897 -5.1280 2.2860 12 16 5.1242 -6.3670 3.4430 13 6 4.4235 -7.8250 2.7445 14 1 3.8098 -7.7581 1.8583 15 6 4.6601 -9.0595 3.3333 16 7 5.4083 -9.1410 4.4131 17 14 3.9166 -10.6051 2.5932 18 1 4.4058 -10.7720 1.2010 19 1 4.3174 -11.7837 3.4028 20 1 2.4362 -10.4884 2.5871 21 6 4.9497 1.0956 1.8844 22 6 3.8629 2.1725 1.8809 23 6 4.3459 1.5774 3.2051 24 1 2.9708 1.0025 -0.2300 25 1 2.9716 -0.6991 -0.7524 26 1 2.6595 0.1360 2.0536 27 1 6.1874 -1.3328 2.3650 28 1 4.7411 -1.1242 3.3814 29 1 4.0611 -2.7766 1.1943 30 1 3.3999 -5.1447 2.2981 31 1 4.8455 -5.3532 1.2807 32 1 5.5734 -10.0037 4.8248 33 1 5.9682 1.4076 1.6532 34 1 4.1664 3.1930 1.6475 35 1 2.8710 1.8855 1.5318 36 1 3.6716 0.8987 3.7275 37 1 4.9671 2.2063 3.8427 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690142636.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = -4.595935 kcal Electronic energy + Delta-G solvation = -19079.328538 eV Core-core repulsion = 15982.955899 eV Total energy + Delta-G solvation = -3096.372639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80502 -39.84356 -37.61693 -35.78328 -34.70140 -34.55612 -31.75148 -29.76302 -27.65539 -26.71305 -24.49689 -23.15629 -21.66766 -20.63048 -19.75442 -19.04085 -17.82645 -17.25452 -17.09727 -16.85507 -16.73294 -16.15483 -15.71988 -15.61751 -15.06474 -14.68461 -14.60364 -14.34786 -14.12844 -13.57255 -13.38087 -13.15865 -13.12982 -12.86860 -12.79689 -12.64091 -12.58933 -12.49163 -12.25476 -11.72119 -11.24613 -11.10785 -10.94540 -10.78341 -10.23519 -9.91866 -9.56288 -8.62663 -8.32165 -6.09544 1.30594 1.45115 1.49412 1.60114 1.64023 1.75235 1.82483 2.29530 2.40700 2.88959 2.92810 3.01679 3.33689 3.40713 3.80860 3.92257 3.96789 4.14294 4.26059 4.35529 4.37497 4.52177 4.58254 4.59393 4.65061 4.80862 4.88229 5.02400 5.08972 5.21382 5.26219 5.43864 5.60203 5.85264 6.19371 6.22015 6.60052 6.70853 7.09054 7.41810 8.76806 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.003222 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.037038 B = 8686.860218 C = 9676.551976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.233 3.767 3 C 0.151 3.849 4 N -0.693 5.693 5 C 0.123 3.877 6 H 0.127 0.873 7 C 0.134 3.866 8 N -0.696 5.696 9 C 0.530 3.470 10 O -0.572 6.572 11 C -0.129 4.129 12 S -0.153 6.153 13 C -0.548 4.548 14 H 0.082 0.918 15 C 0.013 3.987 16 N -0.911 5.911 17 Si 0.997 3.003 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.173 4.173 22 C -0.173 4.173 23 C -0.195 4.195 24 H 0.114 0.886 25 H 0.149 0.851 26 H 0.350 0.650 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.418 0.582 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.271 0.729 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 24.240 -12.435 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.084 4.084 3 C 0.021 3.979 4 N -0.328 5.328 5 C 0.013 3.987 6 H 0.145 0.855 7 C 0.009 3.991 8 N -0.349 5.349 9 C 0.316 3.684 10 O -0.452 6.452 11 C -0.280 4.280 12 S 0.074 5.926 13 C -0.695 4.695 14 H 0.100 0.900 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.819 3.181 18 H -0.185 1.185 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.193 4.193 22 C -0.210 4.210 23 C -0.232 4.232 24 H 0.131 0.869 25 H 0.166 0.834 26 H 0.172 0.828 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.255 0.745 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.281 23.705 -10.861 26.174 hybrid contribution -0.898 -0.302 -1.039 1.406 sum -3.179 23.403 -11.900 26.447 Atomic orbital electron populations 1.81296 1.15355 1.11201 1.09123 1.29692 0.95673 0.91090 0.91988 1.19927 0.78848 1.05343 0.93821 1.60515 1.06112 1.61878 1.04310 1.21272 0.86263 0.90784 1.00422 0.85502 1.21355 0.98672 0.80717 0.98326 1.45512 1.52888 1.05244 1.31300 1.19990 0.79616 0.86168 0.82658 1.90683 1.39091 1.86777 1.28614 1.23363 1.04964 0.95137 1.04518 1.85538 1.68416 0.99723 1.38880 1.23190 1.36948 0.93297 1.16102 0.90012 1.26112 0.95290 1.02582 0.95136 1.70179 1.37321 1.26693 1.20596 0.85023 0.78742 0.75892 0.78454 1.18531 1.20397 1.18850 1.22952 1.00116 0.94527 1.01721 1.23164 0.98509 0.98739 1.00599 1.23018 1.04513 1.04217 0.91443 0.86867 0.83395 0.82827 0.91384 0.93250 0.74459 0.87857 0.87213 0.92024 0.85626 0.87340 0.88435 0.89491 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -10.87 18.54 20.01 0.37 -10.50 16 2 C 0.23 3.12 15.64 89.44 1.40 4.52 16 3 C 0.15 0.55 5.10 84.50 0.43 0.98 16 4 N -0.69 -5.56 5.51 -501.30 -2.76 -8.33 16 5 C 0.12 0.93 2.61 44.92 0.12 1.04 16 6 H 0.13 0.34 7.78 -2.39 -0.02 0.32 16 7 C 0.13 2.40 5.32 86.38 0.46 2.86 16 8 N -0.70 -15.80 5.39 -463.05 -2.50 -18.30 16 9 C 0.53 19.10 7.85 87.66 0.69 19.79 16 10 O -0.57 -26.24 15.86 -3.02 -0.05 -26.28 16 11 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 12 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 13 C -0.55 -31.57 9.50 67.95 0.65 -30.92 16 14 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 15 C 0.01 0.78 5.49 84.86 0.47 1.24 16 16 N -0.91 -56.44 13.22 21.65 0.29 -56.15 16 17 Si 1.00 43.93 29.55 68.60 2.03 45.96 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 20 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 21 C -0.17 -1.11 5.79 -10.79 -0.06 -1.17 16 22 C -0.17 -0.93 8.94 30.59 0.27 -0.66 16 23 C -0.19 -1.87 9.30 30.59 0.28 -1.59 16 24 H 0.11 -0.16 6.68 -2.39 -0.02 -0.17 16 25 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.35 3.36 5.67 -89.70 -0.51 2.85 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.10 7.49 -2.39 -0.02 1.08 16 29 H 0.42 6.96 8.14 -92.71 -0.75 6.20 16 30 H 0.10 3.78 8.14 -2.40 -0.02 3.76 16 31 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 32 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 33 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.10 0.45 5.11 -2.38 -0.01 0.44 16 36 H 0.09 1.07 7.30 -2.38 -0.02 1.05 16 37 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -83.18 332.93 1.20 -81.98 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -0.15 Total: 9.90 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 5.14 Total: -8.57 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -4.60 Total: -93.28 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.05 Total: -26.28 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -83.18 1.20 -81.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690142636.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.380 kcal (2) G-P(sol) polarization free energy of solvation -83.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds