Wall clock time and date at job start Tue Mar 31 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35921 * 117.00052 * 2 1 4 4 C 1.38742 * 120.04243 * 359.72538 * 3 2 1 5 5 C 1.38118 * 119.95339 * 179.77004 * 4 3 2 6 6 C 1.38391 * 120.04594 * 0.50331 * 5 4 3 7 7 Cl 1.73600 * 119.95872 * 179.76596 * 6 5 4 8 8 C 1.38342 * 120.08169 * 359.75239 * 6 5 4 9 9 C 1.38160 * 120.04523 * 359.97438 * 8 6 5 10 10 C 1.50700 * 120.02541 * 179.97438 * 9 8 6 11 11 N 1.46905 * 109.47201 * 260.02595 * 10 9 8 12 12 C 1.46896 * 111.00004 * 293.95234 * 11 10 9 13 13 C 1.46895 * 110.99812 * 169.99353 * 11 10 9 14 14 C 1.53004 * 109.47189 * 190.00057 * 13 11 10 15 15 C 1.50698 * 109.47463 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99792 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00164 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00021 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00281 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46856 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47063 * 119.99465 * 19 17 15 22 22 H 1.48492 * 109.47054 * 239.99975 * 19 17 15 23 23 H 1.09001 * 109.47103 * 300.00350 * 1 2 3 24 24 H 1.09004 * 109.47054 * 59.99854 * 1 2 3 25 25 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.02100 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.97935 * 180.23122 * 5 4 3 28 28 H 1.08003 * 119.97609 * 180.02562 * 8 6 5 29 29 H 1.09002 * 109.46982 * 20.02490 * 10 9 8 30 30 H 1.09003 * 109.47411 * 140.02696 * 10 9 8 31 31 H 1.09003 * 109.47164 * 60.00019 * 12 11 10 32 32 H 1.09006 * 109.46956 * 179.97438 * 12 11 10 33 33 H 1.08997 * 109.47207 * 300.00126 * 12 11 10 34 34 H 1.09002 * 109.47797 * 310.00262 * 13 11 10 35 35 H 1.09004 * 109.46929 * 70.00829 * 13 11 10 36 36 H 1.09002 * 109.46918 * 300.00743 * 14 13 11 37 37 H 1.09001 * 109.47054 * 59.99984 * 14 13 11 38 38 H 0.96998 * 120.00336 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2914 2.3752 -0.0058 5 6 1.9203 3.6049 -0.0009 6 6 3.3024 3.6763 -0.0009 7 17 4.0905 5.2231 -0.0010 8 6 4.0566 2.5166 -0.0005 9 6 3.4312 1.2846 0.0004 10 6 4.2533 0.0216 0.0002 11 7 4.3184 -0.5202 -1.3637 12 6 2.9939 -0.9652 -1.8171 13 6 5.2986 -1.6107 -1.4507 14 6 5.5216 -1.9802 -2.9187 15 6 6.5268 -3.0994 -3.0079 16 1 6.9633 -3.5063 -2.1078 17 6 6.8900 -3.6033 -4.2388 18 7 6.3588 -3.1076 -5.3350 19 14 8.1365 -4.9902 -4.3496 20 1 8.5799 -5.3674 -2.9834 21 1 7.5122 -6.1653 -5.0089 22 1 9.3076 -4.5408 -5.1442 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2128 2.3199 -0.0107 27 1 1.3332 4.5114 -0.0016 28 1 5.1351 2.5743 -0.0001 29 1 5.2610 0.2439 0.3513 30 1 3.7920 -0.7123 0.6610 31 1 2.3044 -0.1210 -1.8089 32 1 3.0707 -1.3613 -2.8298 33 1 2.6238 -1.7431 -1.1494 34 1 6.2418 -1.2877 -1.0101 35 1 4.9239 -2.4800 -0.9103 36 1 4.5785 -2.3033 -3.3593 37 1 5.8963 -1.1110 -3.4592 38 1 6.6140 -3.4623 -6.2010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072982021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:53 Heat of formation + Delta-G solvation = -17.191534 kcal Electronic energy + Delta-G solvation = -19905.142269 eV Core-core repulsion = 16773.886986 eV Total energy + Delta-G solvation = -3131.255282 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57285 -37.80626 -37.01260 -36.14706 -33.21044 -31.87846 -30.12926 -29.23165 -27.67333 -26.64228 -25.26851 -23.04541 -22.27722 -21.04796 -19.79720 -18.13882 -16.74121 -16.45368 -16.21708 -16.09945 -14.75267 -14.64580 -14.46148 -14.38347 -13.94689 -13.78984 -13.36731 -12.84360 -12.53765 -12.26812 -12.12180 -12.04845 -11.92617 -11.49787 -11.20733 -11.09239 -10.97724 -10.85893 -10.79648 -10.53488 -10.42753 -9.80397 -9.40620 -9.10608 -8.99351 -8.29806 -8.18774 -7.60788 -5.95869 -3.98011 1.11487 1.13403 2.10255 3.14352 3.33513 3.40749 3.44566 3.47452 4.45864 4.53255 4.60398 4.79029 4.89373 4.97766 5.04427 5.12416 5.31477 5.38033 5.40028 5.50268 5.69661 5.89831 5.96312 6.04736 6.05457 6.13736 6.26158 6.42390 6.50343 6.57145 6.65773 7.02651 7.19295 7.57547 7.63424 7.84782 7.95878 8.13832 8.48159 9.09716 9.65401 11.15592 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020274 B = 0.003699 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.742046 B = 7568.582444 C = 8504.376731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.302 6.302 3 C 0.139 3.861 4 C -0.199 4.199 5 C -0.077 4.077 6 C -0.071 4.071 7 Cl -0.077 7.077 8 C -0.056 4.056 9 C -0.084 4.084 10 C 0.099 3.901 11 N -0.536 5.536 12 C 0.031 3.969 13 C 0.063 3.937 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.141 0.859 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.022 0.978 34 H 0.060 0.940 35 H 0.020 0.980 36 H 0.017 0.983 37 H 0.024 0.976 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 12.805 13.141 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.092 3.908 4 C -0.218 4.218 5 C -0.096 4.096 6 C -0.098 4.098 7 Cl -0.048 7.048 8 C -0.075 4.075 9 C -0.086 4.086 10 C -0.029 4.029 11 N -0.260 5.260 12 C -0.117 4.117 13 C -0.063 4.063 14 C -0.010 4.010 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.119 0.881 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.159 0.841 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.297 13.080 12.642 21.957 hybrid contribution 0.152 -1.083 0.301 1.134 sum -12.145 11.997 12.942 21.423 Atomic orbital electron populations 1.23081 0.78782 1.04157 1.01187 1.86344 1.21056 1.26181 1.87928 1.18887 0.91897 0.84468 0.95502 1.21106 1.00135 0.91540 1.09040 1.20737 0.92346 0.97879 0.98604 1.20723 0.92749 0.86574 1.09707 1.98354 1.80780 1.28464 1.97242 1.20800 1.00528 0.89277 0.96903 1.19216 0.90437 0.95657 1.03273 1.20899 0.98363 0.92038 0.91615 1.62177 1.08283 1.35506 1.20069 1.22500 0.89720 0.98834 1.00642 1.22355 0.93008 0.89419 1.01567 1.19102 0.96727 0.96283 0.88849 1.21241 1.24198 1.18101 0.92363 0.92757 1.24989 0.96495 0.96991 0.95848 1.69985 1.43488 1.42197 0.97596 0.86555 0.81348 0.82149 0.78047 1.19776 1.21086 1.20999 0.92807 0.92496 0.88131 0.84767 0.85021 0.84132 0.90178 0.93876 0.92116 0.91109 0.95992 0.92182 0.96214 0.96436 0.95736 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.73 6.54 -19.49 -0.13 -3.85 16 3 C 0.14 1.77 5.40 -39.22 -0.21 1.55 16 4 C -0.20 -2.10 9.04 -39.44 -0.36 -2.46 16 5 C -0.08 -0.81 9.82 -39.57 -0.39 -1.20 16 6 C -0.07 -0.85 6.32 -39.49 -0.25 -1.10 16 7 Cl -0.08 -0.86 28.95 -51.86 -1.50 -2.36 16 8 C -0.06 -0.73 9.45 -39.57 -0.37 -1.10 16 9 C -0.08 -1.18 5.17 -104.48 -0.54 -1.72 16 10 C 0.10 1.54 4.99 -4.97 -0.02 1.51 16 11 N -0.54 -10.19 4.75 -244.36 -1.16 -11.35 16 12 C 0.03 0.56 7.85 60.06 0.47 1.03 16 13 C 0.06 1.37 4.90 -3.82 -0.02 1.35 16 14 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 15 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 19 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H 0.05 0.34 7.67 -51.93 -0.40 -0.05 16 24 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 27 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 28 H 0.14 1.72 8.04 -52.48 -0.42 1.29 16 29 H 0.08 1.16 7.79 -51.93 -0.40 0.76 16 30 H 0.04 0.67 7.83 -51.93 -0.41 0.26 16 31 H 0.06 1.00 4.99 -51.93 -0.26 0.75 16 32 H 0.07 1.42 6.30 -51.93 -0.33 1.10 16 33 H 0.02 0.38 7.71 -51.93 -0.40 -0.02 16 34 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 35 H 0.02 0.43 8.12 -51.93 -0.42 0.00 16 36 H 0.02 0.49 6.47 -51.93 -0.34 0.15 16 37 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -31.48 323.81 -8.77 -40.24 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.33 Total: -3.89 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -1.25 Total: -14.02 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.43 Total: -37.83 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: -0.13 Total: -3.85 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.48 -8.77 -40.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072982021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.053 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds