Wall clock time and date at job start Tue Mar 31 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47102 * 2 1 4 4 N 1.46495 * 109.47225 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00205 * 271.90445 * 4 3 2 6 6 H 1.08008 * 120.00054 * 324.78089 * 5 4 3 7 7 C 1.38810 * 120.00227 * 144.76817 * 5 4 3 8 8 N 1.31620 * 120.00108 * 338.79254 * 7 5 4 9 9 Si 1.86801 * 120.00195 * 158.77821 * 7 5 4 10 10 H 1.48497 * 109.46872 * 90.00529 * 9 7 5 11 11 H 1.48492 * 109.47428 * 210.00599 * 9 7 5 12 12 H 1.48503 * 109.46964 * 330.01082 * 9 7 5 13 13 C 1.46503 * 119.99951 * 91.90754 * 4 3 2 14 14 C 1.53005 * 109.47127 * 90.00053 * 13 4 3 15 15 O 1.42903 * 109.46939 * 64.99802 * 14 13 4 16 16 C 1.35925 * 116.99512 * 179.97438 * 15 14 13 17 17 C 1.38703 * 120.06312 * 359.96212 * 16 15 14 18 18 C 1.38154 * 119.96102 * 180.02562 * 17 16 15 19 19 C 1.38276 * 120.07460 * 0.02562 * 18 17 16 20 20 C 1.38252 * 120.11685 * 0.02562 * 19 18 17 21 21 C 1.38256 * 120.04439 * 359.95679 * 20 19 18 22 22 Cl 1.73603 * 120.03772 * 180.02562 * 21 20 19 23 23 H 1.09000 * 109.47466 * 299.99782 * 1 2 3 24 24 H 1.09000 * 109.47411 * 60.00204 * 1 2 3 25 25 H 1.09004 * 109.47201 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47252 * 240.00173 * 2 1 3 27 27 H 1.09001 * 109.46995 * 119.99469 * 2 1 3 28 28 H 1.09003 * 109.47472 * 59.99537 * 3 2 1 29 29 H 1.09000 * 109.46821 * 300.00158 * 3 2 1 30 30 H 0.96998 * 119.99955 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47125 * 330.00028 * 13 4 3 32 32 H 1.09001 * 109.46971 * 209.99800 * 13 4 3 33 33 H 1.09000 * 109.46855 * 304.99955 * 14 13 4 34 34 H 1.09001 * 109.46666 * 185.00008 * 14 13 4 35 35 H 1.08006 * 120.02147 * 0.04089 * 17 16 15 36 36 H 1.08001 * 119.96141 * 180.29565 * 18 17 16 37 37 H 1.08001 * 119.94275 * 180.02562 * 19 18 17 38 38 H 1.08004 * 119.97168 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.4033 1.1861 6 1 3.7971 1.9143 2.0531 7 6 5.3865 0.7066 1.2737 8 7 5.6644 -0.2371 0.3993 9 14 6.6039 1.1086 2.6324 10 1 6.3143 0.2672 3.8213 11 1 7.9840 0.8358 2.1572 12 1 6.4808 2.5424 2.9990 13 6 4.2380 1.4846 -1.2671 14 6 4.4931 2.9410 -1.6607 15 8 5.3611 3.5484 -0.7017 16 6 5.6905 4.8513 -0.9056 17 6 5.1893 5.5306 -2.0062 18 6 5.5258 6.8547 -2.2118 19 6 6.3621 7.5033 -1.3219 20 6 6.8643 6.8289 -0.2244 21 6 6.5304 5.5039 -0.0138 22 17 7.1606 4.6575 1.3647 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 6.5009 -0.7242 0.4608 31 1 3.6492 0.9962 -2.0437 32 1 5.1904 0.9668 -1.1535 33 1 3.5468 3.4811 -1.6877 34 1 4.9591 2.9749 -2.6455 35 1 4.5361 5.0248 -2.7020 36 1 5.1318 7.3850 -3.0661 37 1 6.6235 8.5385 -1.4844 38 1 7.5177 7.3377 0.4689 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127962829.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:18 Heat of formation + Delta-G solvation = -5.350400 kcal Electronic energy + Delta-G solvation = -20532.372691 eV Core-core repulsion = 17401.630879 eV Total energy + Delta-G solvation = -3130.741812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.69128 -37.25677 -35.88357 -35.81821 -32.83498 -31.06174 -30.57448 -29.69041 -28.21635 -25.46086 -23.86563 -22.32757 -22.00820 -21.00875 -19.65493 -17.93927 -16.73667 -16.01754 -15.59828 -15.21346 -14.63677 -14.47734 -14.20525 -13.72174 -13.64274 -13.30810 -12.98034 -12.70589 -12.47989 -11.92017 -11.69483 -11.32248 -11.23491 -11.14421 -10.96289 -10.88142 -10.74987 -10.61713 -10.36875 -10.18472 -10.01391 -9.76387 -9.72788 -9.61799 -8.67474 -8.36922 -7.75141 -6.53188 -5.67665 -3.21311 1.34850 1.60401 2.66536 3.48468 3.55426 3.63051 3.81884 3.86355 4.62877 4.96451 5.02144 5.30457 5.36003 5.42214 5.49490 5.69779 5.75427 5.78445 5.85879 5.90848 5.97017 6.21765 6.24368 6.29480 6.32665 6.43397 6.52029 6.56404 6.63274 6.64591 6.75333 6.90358 7.07926 7.28656 7.64410 7.93464 8.00479 8.61311 9.27208 9.92360 10.45439 11.34375 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.006986 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.580397 B = 4006.834171 C = 5342.943753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.236 4.236 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.895 5.895 9 Si 0.885 3.115 10 H -0.294 1.294 11 H -0.291 1.291 12 H -0.264 1.264 13 C 0.138 3.862 14 C 0.042 3.958 15 O -0.257 6.257 16 C 0.154 3.846 17 C -0.211 4.211 18 C -0.078 4.078 19 C -0.167 4.167 20 C -0.077 4.077 21 C -0.081 4.081 22 Cl -0.049 7.049 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.030 0.970 30 H 0.252 0.748 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 11.146 -5.660 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.366 4.366 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.539 5.539 9 Si 0.715 3.285 10 H -0.222 1.222 11 H -0.218 1.218 12 H -0.189 1.189 13 C 0.011 3.989 14 C -0.036 4.036 15 O -0.167 6.167 16 C 0.105 3.895 17 C -0.230 4.230 18 C -0.097 4.097 19 C -0.186 4.186 20 C -0.095 4.095 21 C -0.109 4.109 22 Cl -0.020 7.020 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.130 0.870 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.362 10.805 -5.373 12.144 hybrid contribution 0.606 0.162 0.498 0.801 sum -0.757 10.967 -4.875 12.025 Atomic orbital electron populations 1.21762 0.97914 1.00261 1.00595 1.22089 0.92882 1.00879 1.02125 1.20952 0.85547 0.93415 0.98004 1.43780 0.99109 1.84508 1.02395 1.18855 1.03391 1.24918 0.89425 0.92516 1.24898 1.00196 0.95063 0.97641 1.69896 1.24271 1.21623 1.38105 0.86561 0.81160 0.79119 0.81657 1.22155 1.21762 1.18949 1.21123 1.01284 0.89265 0.87223 1.24010 0.90889 0.99029 0.89682 1.86591 1.62255 1.18642 1.49233 1.19097 0.92051 0.86311 0.92043 1.21256 1.05986 0.96297 0.99453 1.20945 0.96378 0.93845 0.98510 1.20846 1.01530 1.00160 0.96033 1.20857 0.99158 0.91637 0.97883 1.20347 1.03452 0.93566 0.93501 1.98413 1.85679 1.77251 1.40700 0.93451 0.93785 0.93929 0.93109 0.91814 0.94124 0.95172 0.93824 0.93434 0.87026 0.93809 0.93999 0.84994 0.85911 0.85750 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.14 -2.71 6.26 -26.73 -0.17 -2.88 16 3 C 0.15 3.03 5.67 -4.04 -0.02 3.01 16 4 N -0.58 -13.94 2.42 -173.23 -0.42 -14.36 16 5 C -0.24 -6.40 8.99 -15.06 -0.14 -6.54 16 6 H 0.06 1.59 7.92 -52.48 -0.42 1.17 16 7 C 0.02 0.58 4.98 -17.43 -0.09 0.50 16 8 N -0.89 -25.67 11.29 55.49 0.63 -25.04 16 9 Si 0.88 22.51 29.43 -169.99 -5.00 17.51 16 10 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 11 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 12 H -0.26 -6.53 6.26 56.52 0.35 -6.17 16 13 C 0.14 3.10 5.71 -4.04 -0.02 3.08 16 14 C 0.04 0.80 5.08 37.16 0.19 0.99 16 15 O -0.26 -5.57 9.07 -19.50 -0.18 -5.74 16 16 C 0.15 2.88 6.68 -39.20 -0.26 2.61 16 17 C -0.21 -3.21 9.04 -39.44 -0.36 -3.57 16 18 C -0.08 -1.00 10.04 -39.60 -0.40 -1.39 16 19 C -0.17 -2.07 10.04 -39.56 -0.40 -2.47 16 20 C -0.08 -1.09 9.83 -39.57 -0.39 -1.48 16 21 C -0.08 -1.46 6.33 -39.36 -0.25 -1.70 16 22 Cl -0.05 -0.98 27.50 -51.86 -1.43 -2.41 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.04 0.84 8.05 -51.93 -0.42 0.43 16 29 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.05 0.97 8.07 -51.93 -0.42 0.56 16 32 H 0.11 2.92 5.33 -51.93 -0.28 2.64 16 33 H 0.04 0.79 7.67 -51.93 -0.40 0.39 16 34 H 0.04 0.70 7.66 -51.93 -0.40 0.31 16 35 H 0.13 1.81 6.30 -52.48 -0.33 1.48 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -29.52 331.00 -8.98 -38.50 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.64 Total: -1.71 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.93 Total: -11.74 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.21 Total: -39.40 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.18 Total: -5.74 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.00 Total: 17.51 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.43 Total: -2.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.52 -8.98 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127962829.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.149 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds