Wall clock time and date at job start Tue Mar 31 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46923 * 2 1 4 4 N 1.46903 * 109.46903 * 119.99453 * 2 1 3 5 5 C 1.46893 * 111.00171 * 275.00450 * 4 2 1 6 6 C 1.52998 * 109.47335 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47401 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47092 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00254 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99737 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00270 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99844 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47236 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47288 * 119.99727 * 12 10 8 15 15 H 1.48499 * 109.46943 * 239.99878 * 12 10 8 16 16 C 1.50694 * 109.47393 * 239.99585 * 2 1 3 17 17 C 1.38167 * 120.02285 * 265.00408 * 16 2 1 18 18 C 1.38343 * 120.04315 * 180.27978 * 17 16 2 19 19 Cl 1.73600 * 119.95790 * 179.72049 * 18 17 16 20 20 C 1.38392 * 120.08366 * 359.48372 * 18 17 16 21 21 C 1.38122 * 120.04190 * 0.51339 * 20 18 17 22 22 C 1.38705 * 120.01903 * 85.02161 * 16 2 1 23 23 O 1.35913 * 120.04309 * 359.96020 * 22 16 2 24 24 H 1.09002 * 109.47236 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47555 * 300.00170 * 1 2 3 26 26 H 1.09003 * 109.47032 * 60.00139 * 1 2 3 27 27 H 1.00904 * 110.99555 * 38.95610 * 4 2 1 28 28 H 1.09005 * 109.46848 * 299.99867 * 5 4 2 29 29 H 1.08999 * 109.47812 * 59.99460 * 5 4 2 30 30 H 1.08998 * 109.47376 * 299.99845 * 6 5 4 31 31 H 1.09000 * 109.47262 * 59.99794 * 6 5 4 32 32 H 1.08992 * 109.47409 * 300.00181 * 7 6 5 33 33 H 1.09000 * 109.46889 * 60.00433 * 7 6 5 34 34 H 0.97002 * 120.00259 * 180.02562 * 11 10 8 35 35 H 1.08002 * 119.97531 * 359.97438 * 17 16 2 36 36 H 1.08001 * 119.97779 * 180.26047 * 20 18 17 37 37 H 1.08005 * 120.02436 * 179.72676 * 21 20 18 38 38 H 0.96696 * 114.00529 * 89.99610 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5960 -0.5326 3.5743 7 6 2.6619 0.4206 4.7692 8 6 3.1673 -0.3236 5.9782 9 1 3.4162 -1.3717 5.9021 10 6 3.3110 0.3335 7.1818 11 7 3.0074 1.6097 7.2747 12 14 3.9381 -0.5888 8.6804 13 1 4.2067 -2.0028 8.3148 14 1 5.1916 0.0448 9.1629 15 1 2.9142 -0.5418 9.7549 16 6 2.0324 -0.7105 -1.2303 17 6 2.3610 -2.0510 -1.1687 18 6 2.8278 -2.7023 -2.2965 19 17 3.2470 -4.3849 -2.2148 20 6 2.9563 -2.0153 -3.4910 21 6 2.6287 -0.6751 -3.5566 22 6 2.1654 -0.0189 -2.4253 23 8 1.8422 1.2998 -2.4879 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.4494 -1.4978 1.4101 28 1 2.7587 1.0463 2.1182 29 1 1.0869 0.6165 2.5525 30 1 1.9200 -1.3565 3.8032 31 1 3.5915 -0.9260 3.3685 32 1 3.3381 1.2442 4.5401 33 1 1.6666 0.8143 4.9752 34 1 3.1088 2.0720 8.1213 35 1 2.2582 -2.5897 -0.2383 36 1 3.3168 -2.5264 -4.3714 37 1 2.7332 -0.1381 -4.4878 38 1 2.5781 1.8950 -2.2900 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185339113.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:32 Heat of formation + Delta-G solvation = -44.971286 kcal Electronic energy + Delta-G solvation = -19279.007280 eV Core-core repulsion = 16146.547377 eV Total energy + Delta-G solvation = -3132.459903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32496 -37.31969 -37.17398 -36.05334 -34.05317 -32.28678 -30.55830 -29.84083 -28.66035 -25.96462 -24.02776 -23.03620 -22.13889 -20.84119 -20.07388 -18.60014 -16.79280 -16.47740 -16.17211 -15.68613 -15.17837 -14.58469 -14.43893 -14.20522 -14.17355 -13.61492 -13.25958 -12.98797 -12.71483 -12.44646 -12.22322 -12.11565 -11.68669 -11.49235 -11.38386 -11.20402 -11.11671 -10.86820 -10.67020 -10.57790 -10.41396 -9.71754 -9.36044 -9.12126 -9.02928 -8.66819 -8.34438 -8.24877 -5.99346 -4.01301 0.82590 1.03652 1.96513 3.24704 3.31763 3.39214 3.43831 3.96327 4.17110 4.47197 4.52303 4.65123 4.94175 5.08044 5.14191 5.24209 5.35753 5.36734 5.56634 5.63176 5.74748 5.79349 5.83930 5.91579 6.03631 6.08285 6.21836 6.30313 6.40439 6.70376 6.75344 7.12616 7.27519 7.37503 7.53352 7.68963 7.83305 8.01092 8.44403 9.06186 9.62871 11.12125 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.003152 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.392294 B = 8881.314821 C = 9896.556760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.126 3.874 3 H 0.090 0.910 4 N -0.686 5.686 5 C 0.060 3.940 6 C -0.107 4.107 7 C 0.022 3.978 8 C -0.518 4.518 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.077 4.077 17 C -0.071 4.071 18 C -0.045 4.045 19 Cl -0.072 7.072 20 C -0.103 4.103 21 C -0.136 4.136 22 C 0.110 3.890 23 O -0.494 6.494 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.339 0.661 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.259 0.741 35 H 0.144 0.856 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -4.876 -23.460 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 H 0.108 0.892 4 N -0.316 5.316 5 C -0.068 4.068 6 C -0.145 4.145 7 C -0.016 4.016 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.078 4.078 17 C -0.090 4.090 18 C -0.071 4.071 19 Cl -0.043 7.043 20 C -0.122 4.122 21 C -0.154 4.154 22 C 0.065 3.935 23 O -0.305 6.305 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.157 0.843 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.069 0.931 35 H 0.161 0.839 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.207 -5.004 -23.619 24.244 hybrid contribution -0.081 -0.231 1.201 1.225 sum -2.288 -5.235 -22.419 23.135 Atomic orbital electron populations 1.22431 0.95822 1.02286 1.02793 1.20268 0.92953 0.97372 0.87829 0.89211 1.60695 1.56629 1.10225 1.04100 1.22157 0.99271 0.95335 0.90033 1.21627 1.00120 0.98959 0.93822 1.19065 0.97025 0.94319 0.91155 1.21295 1.43390 0.96436 0.94508 0.92611 1.25030 0.95644 0.94888 0.98987 1.69974 1.49037 1.08992 1.25617 0.86546 0.78508 0.80085 0.82930 1.19710 1.21015 1.21064 1.20186 0.99351 0.93911 0.94390 1.20844 0.96929 0.93674 0.97549 1.20949 1.04405 0.86064 0.95719 1.98373 1.92065 1.15180 1.98657 1.20870 1.00633 0.93953 0.96747 1.21281 1.00650 0.94623 0.98891 1.18324 0.98338 0.84786 0.92069 1.84820 1.39719 1.13416 1.92529 0.92464 0.91842 0.91642 0.84271 0.91455 0.95439 0.93614 0.92528 0.96593 0.96810 0.93101 0.83872 0.84837 0.84687 0.75175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.14 37.16 0.34 -1.60 16 2 C 0.13 1.50 2.52 -68.87 -0.17 1.32 16 3 H 0.09 1.08 7.35 -51.92 -0.38 0.69 16 4 N -0.69 -9.42 5.25 -107.95 -0.57 -9.98 16 5 C 0.06 1.00 5.48 -3.83 -0.02 0.97 16 6 C -0.11 -2.18 5.41 -26.73 -0.14 -2.33 16 7 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 8 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 9 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 12 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 16 C -0.08 -0.87 5.07 -104.48 -0.53 -1.40 16 17 C -0.07 -0.81 9.10 -39.57 -0.36 -1.17 16 18 C -0.04 -0.48 6.32 -39.49 -0.25 -0.73 16 19 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 20 C -0.10 -0.95 9.82 -39.57 -0.39 -1.34 16 21 C -0.14 -1.22 9.99 -39.44 -0.39 -1.62 16 22 C 0.11 1.12 6.68 -39.22 -0.26 0.86 16 23 O -0.49 -4.48 12.64 -19.47 -0.25 -4.73 16 24 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 25 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.34 4.39 7.90 -39.29 -0.31 4.08 16 28 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 29 H 0.03 0.45 7.44 -51.93 -0.39 0.07 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.14 1.66 6.89 -52.49 -0.36 1.30 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.39 2.00 9.06 45.56 0.41 2.41 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -31.14 335.22 -9.04 -40.17 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.75 Total: 1.46 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -2.73 Total: -20.17 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.17 Total: -36.30 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.25 Total: -4.73 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.14 -9.04 -40.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185339113.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.796 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds