Wall clock time and date at job start Tue Mar 31 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47054 * 2 1 4 4 C 1.50697 * 109.46977 * 240.00081 * 2 1 3 5 5 H 1.07995 * 119.99890 * 273.42928 * 4 2 1 6 6 C 1.37878 * 120.00069 * 93.43043 * 4 2 1 7 7 N 1.31518 * 119.99944 * 177.30731 * 6 4 2 8 8 Si 1.86799 * 120.00151 * 357.30675 * 6 4 2 9 9 H 1.48506 * 109.47243 * 84.86793 * 8 6 4 10 10 H 1.48499 * 109.47403 * 204.87214 * 8 6 4 11 11 H 1.48506 * 109.46930 * 324.87448 * 8 6 4 12 12 N 1.46901 * 109.47138 * 119.99913 * 2 1 3 13 13 C 1.46897 * 110.99855 * 176.04419 * 12 2 1 14 14 C 1.46899 * 110.99806 * 299.99928 * 12 2 1 15 15 C 1.53000 * 109.46834 * 160.20619 * 14 12 2 16 16 H 1.09009 * 109.47091 * 305.32111 * 15 14 12 17 17 O 1.42907 * 109.47411 * 65.31769 * 15 14 12 18 18 C 1.50694 * 109.47279 * 185.31657 * 15 14 12 19 19 C 1.38237 * 120.00950 * 264.99990 * 18 15 14 20 20 C 1.38226 * 120.01320 * 179.97438 * 19 18 15 21 21 C 1.38255 * 120.02501 * 0.04111 * 20 19 18 22 22 C 1.38196 * 120.01875 * 359.97438 * 21 20 19 23 23 C 1.38338 * 120.00453 * 84.72705 * 18 15 14 24 24 Cl 1.73598 * 120.01342 * 359.97438 * 23 18 15 25 25 H 1.08998 * 109.47409 * 186.61141 * 1 2 3 26 26 H 1.09006 * 109.47205 * 306.61055 * 1 2 3 27 27 H 1.09002 * 109.46829 * 66.60797 * 1 2 3 28 28 H 0.96999 * 119.99400 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47455 * 191.32335 * 13 12 2 30 30 H 1.09005 * 109.47275 * 71.32542 * 13 12 2 31 31 H 1.08999 * 109.47353 * 311.32607 * 13 12 2 32 32 H 1.08994 * 109.47076 * 280.20179 * 14 12 2 33 33 H 1.09000 * 109.47309 * 40.20845 * 14 12 2 34 34 H 0.96698 * 113.99442 * 59.99977 * 17 15 14 35 35 H 1.07993 * 119.99002 * 0.02562 * 19 18 15 36 36 H 1.07994 * 119.98586 * 180.02562 * 20 19 18 37 37 H 1.08006 * 119.98996 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00571 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1595 -1.7828 -1.2207 6 6 2.3294 0.0088 -2.3687 7 7 2.8178 -0.6040 -3.4249 8 14 2.0384 1.8535 -2.4106 9 1 3.2127 2.5533 -1.8303 10 1 1.8452 2.2924 -3.8160 11 1 0.8257 2.1813 -1.6185 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0263 2.4210 15 6 1.6380 -0.9987 3.5989 16 1 1.0929 -1.9116 3.3586 17 8 3.0083 -1.3149 3.8528 18 6 1.0345 -0.3609 4.8237 19 6 1.8442 0.2957 5.7315 20 6 1.2906 0.8811 6.8546 21 6 -0.0730 0.8096 7.0712 22 6 -0.8835 0.1532 6.1646 23 6 -0.3308 -0.4276 5.0368 24 17 -1.3493 -1.2453 3.8933 25 1 -0.3634 -1.0208 0.1183 26 1 -0.3634 0.6129 0.8250 27 1 -0.3633 0.4080 -0.9432 28 1 3.0265 -0.0981 -4.2258 29 1 3.8084 -1.4783 1.9718 30 1 3.9194 0.1899 1.3613 31 1 3.8149 -1.1709 0.2187 32 1 2.1706 0.8459 2.6221 33 1 0.5137 0.2883 2.2873 34 1 3.5544 -0.5481 4.0738 35 1 2.9094 0.3519 5.5626 36 1 1.9236 1.3944 7.5633 37 1 -0.5048 1.2669 7.9492 38 1 -1.9487 0.0979 6.3338 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268334792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:42 Heat of formation + Delta-G solvation = -23.403262 kcal Electronic energy + Delta-G solvation = -20509.879997 eV Core-core repulsion = 17378.355354 eV Total energy + Delta-G solvation = -3131.524643 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95918 -37.78110 -36.49825 -35.90320 -32.54251 -31.80646 -30.93340 -30.03828 -28.22056 -25.34669 -24.15643 -22.86434 -22.67208 -21.04608 -19.32707 -17.80764 -16.97973 -16.21848 -16.07282 -15.49769 -14.94667 -14.49155 -14.20333 -14.05360 -13.98726 -13.46914 -13.13857 -12.65051 -12.49193 -12.40627 -11.99442 -11.68662 -11.60408 -11.50892 -11.24804 -11.08914 -10.89820 -10.74769 -10.56218 -10.46758 -10.18839 -9.77749 -9.53930 -9.14931 -9.02702 -8.76119 -8.55427 -7.27531 -6.07511 -4.05070 0.95070 1.04016 2.07607 3.25230 3.34630 3.37041 3.39947 4.35044 4.40324 4.45997 4.60776 4.71664 4.95409 5.14450 5.15872 5.29890 5.41603 5.47800 5.51287 5.64567 5.90446 6.00549 6.04292 6.17236 6.27154 6.33516 6.40236 6.55996 6.59037 6.61975 6.77270 6.92781 7.15334 7.35026 7.63791 7.70084 8.04655 8.17553 8.68114 9.03987 9.56386 11.05543 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024137 B = 0.004837 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.779082 B = 5787.560083 C = 6106.279196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.179 3.821 3 H -0.004 1.004 4 C -0.498 4.498 5 H 0.082 0.918 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.870 3.130 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.265 1.265 12 N -0.521 5.521 13 C 0.027 3.973 14 C 0.024 3.976 15 C 0.150 3.850 16 H 0.122 0.878 17 O -0.544 6.544 18 C -0.100 4.100 19 C -0.103 4.103 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.110 4.110 23 C -0.030 4.030 24 Cl -0.056 7.056 25 H 0.054 0.946 26 H 0.020 0.980 27 H 0.049 0.951 28 H 0.264 0.736 29 H 0.070 0.930 30 H 0.000 1.000 31 H 0.084 0.916 32 H 0.025 0.975 33 H 0.084 0.916 34 H 0.365 0.635 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 3.902 21.196 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.072 3.928 3 H 0.014 0.986 4 C -0.537 4.537 5 H 0.100 0.900 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.698 3.302 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.190 1.190 12 N -0.245 5.245 13 C -0.121 4.121 14 C -0.105 4.105 15 C 0.090 3.910 16 H 0.140 0.860 17 O -0.349 6.349 18 C -0.101 4.101 19 C -0.121 4.121 20 C -0.132 4.132 21 C -0.133 4.133 22 C -0.129 4.129 23 C -0.057 4.057 24 Cl -0.027 7.027 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.103 0.897 32 H 0.043 0.957 33 H 0.102 0.898 34 H 0.213 0.787 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.137 2.773 20.731 21.537 hybrid contribution 0.203 2.511 -0.095 2.521 sum -4.935 5.284 20.635 21.865 Atomic orbital electron populations 1.22038 0.98108 1.00432 0.98730 1.19708 0.92006 0.91996 0.89056 0.98634 1.20878 1.42917 0.96225 0.93655 0.90006 1.24971 0.94533 0.97787 0.95740 1.69892 1.43792 1.36069 1.03835 0.86985 0.79279 0.86783 0.77149 1.20536 1.21423 1.18980 1.62009 1.10648 1.51398 1.00485 1.22507 0.87304 0.98379 1.03917 1.22805 1.01798 0.94093 0.91854 1.21051 0.82194 0.99274 0.88458 0.86034 1.86691 1.19401 1.37074 1.91708 1.20666 0.92283 0.98717 0.98466 1.20893 0.99957 0.97193 0.94079 1.21201 0.95263 0.99282 0.97462 1.21098 0.93691 0.99310 0.99231 1.21066 1.00645 0.98062 0.93087 1.20814 0.91182 1.00382 0.93324 1.98407 1.67532 1.77359 1.59387 0.92693 0.96116 0.93213 0.92653 0.91136 0.98144 0.89696 0.95680 0.89813 0.78748 0.85195 0.85447 0.85259 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.58 37.16 0.32 -2.64 16 2 C 0.18 4.27 1.65 -68.86 -0.11 4.16 16 3 H 0.00 -0.10 5.74 -51.93 -0.30 -0.40 16 4 C -0.50 -13.89 7.30 -34.44 -0.25 -14.14 16 5 H 0.08 2.53 8.05 -52.49 -0.42 2.10 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 8 Si 0.87 21.57 26.36 -169.99 -4.48 17.09 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.27 -6.32 6.46 56.52 0.37 -5.95 16 12 N -0.52 -10.97 4.55 -236.29 -1.08 -12.05 16 13 C 0.03 0.55 8.96 60.06 0.54 1.08 16 14 C 0.02 0.41 4.65 -3.82 -0.02 0.39 16 15 C 0.15 2.23 2.94 -27.89 -0.08 2.15 16 16 H 0.12 2.02 7.14 -51.92 -0.37 1.65 16 17 O -0.54 -7.76 10.19 -35.23 -0.36 -8.11 16 18 C -0.10 -1.27 5.07 -104.59 -0.53 -1.80 16 19 C -0.10 -1.08 9.30 -39.59 -0.37 -1.45 16 20 C -0.11 -1.01 10.05 -39.58 -0.40 -1.41 16 21 C -0.12 -1.00 10.04 -39.59 -0.40 -1.40 16 22 C -0.11 -1.12 9.83 -39.55 -0.39 -1.50 16 23 C -0.03 -0.37 6.31 -39.49 -0.25 -0.62 16 24 Cl -0.06 -0.74 27.18 -51.86 -1.41 -2.15 16 25 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.02 0.39 6.37 -51.93 -0.33 0.06 16 27 H 0.05 1.12 7.20 -51.93 -0.37 0.74 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.07 1.29 5.84 -51.93 -0.30 0.99 16 30 H 0.00 0.00 7.92 -51.93 -0.41 -0.41 16 31 H 0.08 1.98 6.58 -51.93 -0.34 1.64 16 32 H 0.03 0.42 7.85 -51.93 -0.41 0.01 16 33 H 0.08 1.47 5.43 -51.93 -0.28 1.19 16 34 H 0.37 3.97 7.32 45.56 0.33 4.30 16 35 H 0.13 1.11 6.41 -52.49 -0.34 0.77 16 36 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 38 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -30.98 315.53 -8.24 -39.22 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.41 Total: 2.92 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -2.04 Total: -15.22 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.30 Total: -38.50 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.36 Total: -8.11 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.48 Total: 17.09 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.41 Total: -2.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.98 -8.24 -39.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268334792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.820 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds