Wall clock time and date at job start Tue Mar 31 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47054 * 2 1 4 4 C 1.50697 * 109.46977 * 240.00081 * 2 1 3 5 5 H 1.07995 * 119.99890 * 273.42928 * 4 2 1 6 6 C 1.37878 * 120.00069 * 93.43043 * 4 2 1 7 7 N 1.31518 * 119.99944 * 177.30731 * 6 4 2 8 8 Si 1.86799 * 120.00151 * 357.30675 * 6 4 2 9 9 H 1.48506 * 109.47243 * 84.86793 * 8 6 4 10 10 H 1.48499 * 109.47403 * 204.87214 * 8 6 4 11 11 H 1.48506 * 109.46930 * 324.87448 * 8 6 4 12 12 N 1.46901 * 109.47138 * 119.99913 * 2 1 3 13 13 C 1.46897 * 110.99855 * 176.04419 * 12 2 1 14 14 C 1.46899 * 110.99806 * 299.99928 * 12 2 1 15 15 C 1.53000 * 109.46834 * 160.20619 * 14 12 2 16 16 H 1.09009 * 109.47091 * 305.32111 * 15 14 12 17 17 O 1.42907 * 109.47411 * 65.31769 * 15 14 12 18 18 C 1.50694 * 109.47279 * 185.31657 * 15 14 12 19 19 C 1.38237 * 120.00950 * 264.99990 * 18 15 14 20 20 C 1.38226 * 120.01320 * 179.97438 * 19 18 15 21 21 C 1.38255 * 120.02501 * 0.04111 * 20 19 18 22 22 C 1.38196 * 120.01875 * 359.97438 * 21 20 19 23 23 C 1.38338 * 120.00453 * 84.72705 * 18 15 14 24 24 Cl 1.73598 * 120.01342 * 359.97438 * 23 18 15 25 25 H 1.08998 * 109.47409 * 186.61141 * 1 2 3 26 26 H 1.09006 * 109.47205 * 306.61055 * 1 2 3 27 27 H 1.09002 * 109.46829 * 66.60797 * 1 2 3 28 28 H 0.96999 * 119.99400 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47455 * 191.32335 * 13 12 2 30 30 H 1.09005 * 109.47275 * 71.32542 * 13 12 2 31 31 H 1.08999 * 109.47353 * 311.32607 * 13 12 2 32 32 H 1.08994 * 109.47076 * 280.20179 * 14 12 2 33 33 H 1.09000 * 109.47309 * 40.20845 * 14 12 2 34 34 H 0.96698 * 113.99442 * 59.99977 * 17 15 14 35 35 H 1.07993 * 119.99002 * 0.02562 * 19 18 15 36 36 H 1.07994 * 119.98586 * 180.02562 * 20 19 18 37 37 H 1.08006 * 119.98996 * 179.97438 * 21 20 19 38 38 H 1.07998 * 120.00571 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1595 -1.7828 -1.2207 6 6 2.3294 0.0088 -2.3687 7 7 2.8178 -0.6040 -3.4249 8 14 2.0384 1.8535 -2.4106 9 1 3.2127 2.5533 -1.8303 10 1 1.8452 2.2924 -3.8160 11 1 0.8257 2.1813 -1.6185 12 7 2.0197 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0263 2.4210 15 6 1.6380 -0.9987 3.5989 16 1 1.0929 -1.9116 3.3586 17 8 3.0083 -1.3149 3.8528 18 6 1.0345 -0.3609 4.8237 19 6 1.8442 0.2957 5.7315 20 6 1.2906 0.8811 6.8546 21 6 -0.0730 0.8096 7.0712 22 6 -0.8835 0.1532 6.1646 23 6 -0.3308 -0.4276 5.0368 24 17 -1.3493 -1.2453 3.8933 25 1 -0.3634 -1.0208 0.1183 26 1 -0.3634 0.6129 0.8250 27 1 -0.3633 0.4080 -0.9432 28 1 3.0265 -0.0981 -4.2258 29 1 3.8084 -1.4783 1.9718 30 1 3.9194 0.1899 1.3613 31 1 3.8149 -1.1709 0.2187 32 1 2.1706 0.8459 2.6221 33 1 0.5137 0.2883 2.2873 34 1 3.5544 -0.5481 4.0738 35 1 2.9094 0.3519 5.5626 36 1 1.9236 1.3944 7.5633 37 1 -0.5048 1.2669 7.9492 38 1 -1.9487 0.0979 6.3338 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268334792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:41 Heat of formation + Delta-G solvation = -44.914594 kcal Electronic energy + Delta-G solvation = -20510.812798 eV Core-core repulsion = 17378.355354 eV Total energy + Delta-G solvation = -3132.457445 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.88193 -39.10204 -37.47327 -37.24354 -34.57463 -32.82758 -31.87676 -31.64588 -29.53915 -27.17710 -25.72735 -24.09274 -23.58365 -22.07188 -21.12820 -19.09252 -18.69573 -17.27535 -17.10409 -16.94837 -16.06904 -15.99313 -15.65671 -15.25734 -14.90318 -14.70403 -14.56175 -14.36522 -14.07167 -13.91153 -13.25692 -12.98573 -12.81926 -12.64505 -12.55878 -12.52866 -12.36074 -12.19786 -12.14151 -12.03118 -11.78804 -11.61148 -11.19033 -10.77883 -10.72603 -9.87384 -9.63526 -8.93810 -8.28563 -6.30636 0.16678 0.28876 1.19811 1.29171 1.32608 1.43023 2.32051 2.63433 2.98319 3.23671 3.43641 3.77454 3.85354 4.04479 4.17096 4.22192 4.37150 4.43297 4.49184 4.58148 4.60119 4.67734 4.79683 4.85935 4.89857 5.00524 5.06824 5.14216 5.29109 5.36662 5.45103 5.47395 5.50208 5.66158 5.86857 6.10763 6.42050 6.69263 6.75534 6.79525 7.34674 8.88480 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024137 B = 0.004837 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.779082 B = 5787.560083 C = 6106.279196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.181 3.819 3 H -0.006 1.006 4 C -0.496 4.496 5 H 0.034 0.966 6 C 0.015 3.985 7 N -0.947 5.947 8 Si 0.934 3.066 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.246 1.246 12 N -0.536 5.536 13 C 0.037 3.963 14 C 0.028 3.972 15 C 0.163 3.837 16 H 0.098 0.902 17 O -0.554 6.554 18 C -0.120 4.120 19 C -0.108 4.108 20 C -0.110 4.110 21 C -0.107 4.107 22 C -0.116 4.116 23 C -0.047 4.047 24 Cl -0.077 7.077 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.265 0.735 29 H 0.090 0.910 30 H 0.013 0.987 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.381 0.619 35 H 0.147 0.853 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 6.443 24.399 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.074 3.926 3 H 0.011 0.989 4 C -0.535 4.535 5 H 0.052 0.948 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.758 3.242 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.169 1.169 12 N -0.260 5.260 13 C -0.111 4.111 14 C -0.100 4.100 15 C 0.103 3.897 16 H 0.116 0.884 17 O -0.361 6.361 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.125 4.125 22 C -0.135 4.135 23 C -0.074 4.074 24 Cl -0.048 7.048 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.031 0.969 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.231 0.769 35 H 0.165 0.835 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.550 5.317 23.968 25.170 hybrid contribution 0.372 1.649 -0.951 1.939 sum -5.178 6.966 23.017 24.599 Atomic orbital electron populations 1.21909 0.96507 1.00701 0.99487 1.19575 0.93149 0.91275 0.88600 0.98863 1.21004 1.42449 0.94272 0.95747 0.94803 1.25784 0.94373 1.02864 0.95187 1.70045 1.45719 1.38192 1.04743 0.85953 0.80074 0.80602 0.77543 1.19664 1.21115 1.16935 1.61910 1.10948 1.52016 1.01149 1.22390 0.87180 0.99302 1.02266 1.22845 1.01482 0.94904 0.90775 1.20649 0.82472 0.97748 0.88801 0.88414 1.86643 1.19445 1.38350 1.91711 1.20470 0.92668 1.00557 0.98444 1.21176 1.00699 0.96631 0.94069 1.21606 0.95799 0.98292 0.97112 1.21539 0.93648 0.97854 0.99472 1.21340 1.01790 0.97817 0.92551 1.21012 0.91033 1.01373 0.93985 1.98396 1.68079 1.77960 1.60363 0.93292 0.93210 0.93962 0.92555 0.89157 0.96895 0.93738 0.94500 0.90086 0.76914 0.83506 0.82336 0.82056 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 8.58 71.98 0.62 -4.88 16 2 C 0.18 8.63 1.65 44.17 0.07 8.70 16 3 H -0.01 -0.30 5.74 -2.38 -0.01 -0.31 16 4 C -0.50 -28.61 7.30 25.60 0.19 -28.42 16 5 H 0.03 2.22 8.05 -2.91 -0.02 2.20 16 6 C 0.02 0.90 5.47 84.65 0.46 1.36 16 7 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 8 Si 0.93 44.39 26.36 68.60 1.81 46.19 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.25 -10.84 6.46 99.48 0.64 -10.19 16 12 N -0.54 -22.51 4.55 -901.48 -4.10 -26.62 16 13 C 0.04 1.49 8.96 127.69 1.14 2.63 16 14 C 0.03 0.94 4.65 86.30 0.40 1.34 16 15 C 0.16 4.68 2.94 29.85 0.09 4.77 16 16 H 0.10 3.27 7.14 -2.38 -0.02 3.25 16 17 O -0.55 -14.92 10.19 -148.98 -1.52 -16.44 16 18 C -0.12 -2.81 5.07 -19.84 -0.10 -2.91 16 19 C -0.11 -1.89 9.30 22.27 0.21 -1.69 16 20 C -0.11 -1.46 10.05 22.27 0.22 -1.24 16 21 C -0.11 -1.40 10.04 22.26 0.22 -1.18 16 22 C -0.12 -2.04 9.83 22.29 0.22 -1.82 16 23 C -0.05 -1.10 6.31 22.33 0.14 -0.96 16 24 Cl -0.08 -2.01 27.18 -2.72 -0.07 -2.08 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.05 1.83 6.37 -2.38 -0.02 1.82 16 27 H 0.04 1.84 7.20 -2.39 -0.02 1.83 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.09 3.28 5.84 -2.39 -0.01 3.26 16 30 H 0.01 0.48 7.92 -2.38 -0.02 0.46 16 31 H 0.04 2.15 6.58 -2.39 -0.02 2.14 16 32 H 0.04 1.14 7.85 -2.39 -0.02 1.12 16 33 H 0.08 2.72 5.43 -2.39 -0.01 2.70 16 34 H 0.38 7.31 7.32 -74.06 -0.54 6.77 16 35 H 0.15 1.96 6.41 -2.91 -0.02 1.94 16 36 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 38 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -69.44 315.53 0.77 -68.68 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.47 Total: 13.69 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 3.89 Total: -24.28 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -3.80 Total: -85.76 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -1.52 Total: -16.44 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.81 Total: 46.19 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.07 Total: -2.08 kcal Total: -69.44 0.77 -68.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268334792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.763 kcal (2) G-P(sol) polarization free energy of solvation -69.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds