Wall clock time and date at job start Tue Mar 31 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99985 * 2 1 4 4 N 1.46899 * 109.47590 * 124.10810 * 3 2 1 5 5 C 1.46901 * 110.99769 * 63.68740 * 4 3 2 6 6 C 1.50700 * 109.47173 * 66.04958 * 5 4 3 7 7 H 1.08001 * 119.99761 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99788 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00131 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99789 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46910 * 89.99917 * 10 8 6 12 12 H 1.48498 * 109.47029 * 210.00198 * 10 8 6 13 13 H 1.48507 * 109.46754 * 330.00095 * 10 8 6 14 14 C 1.46905 * 110.99515 * 299.73781 * 4 3 2 15 15 C 1.50704 * 109.46763 * 288.70829 * 14 4 3 16 16 N 1.29478 * 126.14860 * 90.26795 * 15 14 4 17 17 N 1.26247 * 116.57684 * 179.97438 * 16 15 14 18 18 C 1.29777 * 117.68734 * 359.97438 * 17 16 15 19 19 O 1.35581 * 125.65457 * 179.97438 * 18 17 16 20 20 C 1.42901 * 117.00182 * 0.02705 * 19 18 17 21 21 C 1.52997 * 109.47385 * 180.02562 * 20 19 18 22 22 S 1.71317 * 108.69432 * 359.72818 * 18 17 16 23 23 H 1.07996 * 120.00187 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99617 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.00187 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46871 * 4.10314 * 3 2 1 27 27 H 1.09006 * 109.46809 * 244.10773 * 3 2 1 28 28 H 1.09005 * 109.46687 * 186.04758 * 5 4 3 29 29 H 1.08997 * 109.47438 * 306.04418 * 5 4 3 30 30 H 0.96998 * 119.99750 * 179.97438 * 9 8 6 31 31 H 1.08998 * 109.47130 * 48.71163 * 14 4 3 32 32 H 1.08999 * 109.46825 * 168.71369 * 14 4 3 33 33 H 1.08997 * 109.46766 * 300.00180 * 20 19 18 34 34 H 1.08996 * 109.46975 * 59.99994 * 20 19 18 35 35 H 1.09000 * 109.47037 * 179.97438 * 21 20 19 36 36 H 1.08997 * 109.47257 * 299.99807 * 21 20 19 37 37 H 1.08996 * 109.47128 * 60.00016 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9810 1.3410 1.1467 5 6 4.0031 0.2917 1.0361 6 6 4.8938 0.5805 -0.1448 7 1 4.7183 1.4562 -0.7520 8 6 5.9332 -0.2726 -0.4492 9 7 6.1471 -1.3387 0.2906 10 14 7.0377 0.0858 -1.9125 11 1 8.1824 0.9245 -1.4749 12 1 7.5459 -1.1917 -2.4737 13 1 6.2626 0.8096 -2.9521 14 6 2.2452 1.2278 2.4132 15 6 1.4842 2.5034 2.6677 16 7 0.2731 2.7590 2.2876 17 7 -0.1900 3.8910 2.6004 18 6 0.5796 4.6933 3.2700 19 8 0.2492 5.9403 3.6873 20 6 -1.0609 6.4081 3.3603 21 6 -1.2489 7.8236 3.9096 22 16 2.0797 3.9130 3.5450 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5399 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3574 2.1323 0.0735 27 1 2.6339 1.3953 -0.9246 28 1 4.6022 0.2707 1.9465 29 1 3.5184 -0.6747 0.8978 30 1 6.8782 -1.9390 0.0762 31 1 1.5465 0.3933 2.3541 32 1 2.9487 1.0557 3.2278 33 1 -1.1825 6.4199 2.2772 34 1 -1.8043 5.7447 3.8022 35 1 -2.2480 8.1805 3.6598 36 1 -1.1271 7.8122 4.9927 37 1 -0.5055 8.4867 3.4673 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292364621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:07 Heat of formation + Delta-G solvation = 36.974036 kcal Electronic energy + Delta-G solvation = -19715.466891 eV Core-core repulsion = 16620.896861 eV Total energy + Delta-G solvation = -3094.570030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.35729 -39.97235 -39.00622 -34.89266 -34.02253 -33.01269 -32.05340 -29.47549 -28.31730 -26.83614 -25.41920 -24.26583 -22.81158 -21.44555 -20.68280 -20.12645 -18.73589 -18.26911 -17.92541 -16.91379 -16.76745 -16.07876 -15.77939 -15.74754 -15.48400 -15.07449 -14.51110 -14.17607 -13.99487 -13.78774 -13.49970 -13.25118 -13.05508 -12.72151 -12.65180 -12.55705 -12.31995 -12.19262 -11.97190 -11.87581 -11.62922 -11.31466 -11.19047 -10.66189 -10.57511 -10.25533 -10.11069 -9.07746 -8.16200 -6.23781 -0.61908 -0.51777 0.27102 1.39700 1.44412 1.44889 1.48172 1.55479 2.06094 2.43702 3.05042 3.17717 3.38313 3.61655 3.97822 3.99362 4.06722 4.14118 4.29103 4.35340 4.54006 4.57698 4.65644 4.76580 4.88753 4.99256 5.08896 5.16414 5.25196 5.35244 5.65691 5.66385 5.78614 5.85703 6.09378 6.25656 6.55297 6.90014 7.44573 7.46514 8.94380 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.003931 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.576612 B = 7121.325997 C = 7603.232210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.192 4.192 3 C 0.095 3.905 4 N -0.530 5.530 5 C 0.207 3.793 6 C -0.518 4.518 7 H 0.059 0.941 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.268 1.268 14 C 0.131 3.869 15 C 0.015 3.985 16 N -0.238 5.238 17 N -0.352 5.352 18 C 0.169 3.831 19 O -0.276 6.276 20 C 0.053 3.947 21 C -0.145 4.145 22 S 0.218 5.782 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.015 0.985 29 H -0.015 1.015 30 H 0.263 0.737 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 13.247 7.694 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.211 4.211 3 C -0.032 4.032 4 N -0.254 5.254 5 C 0.082 3.918 6 C -0.557 4.557 7 H 0.077 0.923 8 C -0.190 4.190 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.193 1.193 14 C -0.001 4.001 15 C -0.267 4.267 16 N -0.076 5.076 17 N -0.206 5.206 18 C -0.148 4.148 19 O -0.181 6.181 20 C -0.025 4.025 21 C -0.202 4.202 22 S 0.459 5.541 23 H 0.118 0.882 24 H 0.126 0.874 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.033 0.967 29 H 0.003 0.997 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.701 13.830 7.780 20.326 hybrid contribution 0.132 -1.012 -0.867 1.339 sum -12.569 12.819 6.914 19.238 Atomic orbital electron populations 1.23878 0.94993 1.02194 0.99181 1.23463 0.96854 0.99421 1.01396 1.21140 0.93541 0.94064 0.94493 1.62283 1.13070 1.49745 1.00302 1.19459 0.88493 0.87439 0.96446 1.21394 1.12978 1.08758 1.12527 0.92275 1.25735 0.98961 0.94829 0.99489 1.70050 1.31837 1.14433 1.40757 0.85519 0.78992 0.77434 0.79492 1.19983 1.21014 1.19290 1.20522 0.95914 0.88876 0.94755 1.29840 0.94072 1.01457 1.01371 1.71183 1.09847 1.08901 1.17650 1.71416 1.30581 0.99884 1.18756 1.27499 0.96378 0.92753 0.98170 1.86338 1.37231 1.21932 1.72561 1.23182 0.80036 0.97753 1.01500 1.21848 1.04236 0.91708 1.02389 1.84856 1.09340 1.08323 1.51570 0.88240 0.87448 0.89048 0.91378 0.91261 0.96740 0.99724 0.92767 0.91087 0.87691 0.91451 0.91032 0.87608 0.91011 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 14.32 67.78 0.97 -4.11 16 2 C -0.19 -7.02 7.44 25.64 0.19 -6.83 16 3 C 0.10 3.76 5.48 85.56 0.47 4.23 16 4 N -0.53 -21.89 4.65 -909.91 -4.23 -26.12 16 5 C 0.21 10.28 4.55 85.56 0.39 10.67 16 6 C -0.52 -28.15 8.46 25.60 0.22 -27.93 16 7 H 0.06 3.20 7.12 -2.91 -0.02 3.18 16 8 C 0.01 0.45 5.46 84.65 0.46 0.92 16 9 N -0.93 -53.91 13.29 21.45 0.28 -53.62 16 10 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 14 C 0.13 4.51 5.45 85.56 0.47 4.98 16 15 C 0.01 0.48 6.62 88.46 0.59 1.06 16 16 N -0.24 -7.97 11.04 -47.69 -0.53 -8.50 16 17 N -0.35 -11.16 10.94 -175.54 -1.92 -13.08 16 18 C 0.17 4.71 8.25 130.55 1.08 5.79 16 19 O -0.28 -6.58 10.20 -88.90 -0.91 -7.48 16 20 C 0.05 0.94 6.32 71.98 0.45 1.40 16 21 C -0.14 -1.60 10.28 71.98 0.74 -0.86 16 22 S 0.22 5.84 23.31 -56.49 -1.32 4.53 16 23 H 0.10 3.03 7.84 -2.91 -0.02 3.01 16 24 H 0.11 2.87 8.06 -2.91 -0.02 2.84 16 25 H 0.09 3.73 6.78 -2.91 -0.02 3.71 16 26 H 0.07 2.58 6.63 -2.39 -0.02 2.56 16 27 H 0.07 3.00 6.77 -2.38 -0.02 2.99 16 28 H 0.01 0.76 7.87 -2.38 -0.02 0.74 16 29 H -0.01 -0.79 6.32 -2.39 -0.02 -0.81 16 30 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.07 2.44 6.74 -2.39 -0.02 2.43 16 32 H 0.10 3.33 7.82 -2.39 -0.02 3.31 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -62.07 327.88 0.49 -61.57 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.07 Total: 7.88 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 6.02 Total: -10.69 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -6.40 Total: -101.32 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.91 Total: -7.48 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -1.32 Total: 4.53 kcal Total: -62.07 0.49 -61.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292364621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.548 kcal (2) G-P(sol) polarization free energy of solvation -62.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds