Wall clock time and date at job start Tue Mar 31 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47085 * 2 1 4 4 H 1.09002 * 109.46879 * 56.22791 * 3 2 1 5 5 C 1.50696 * 109.47060 * 176.22441 * 3 2 1 6 6 H 1.08000 * 119.99740 * 94.70629 * 5 3 2 7 7 C 1.37877 * 120.00181 * 274.70799 * 5 3 2 8 8 N 1.31513 * 119.99797 * 5.94717 * 7 5 3 9 9 Si 1.86799 * 119.99985 * 185.95166 * 7 5 3 10 10 H 1.48499 * 109.47153 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47281 * 299.99767 * 9 7 5 12 12 H 1.48496 * 109.47574 * 59.99958 * 9 7 5 13 13 N 1.46496 * 109.47126 * 296.22610 * 3 2 1 14 14 C 1.30131 * 120.00162 * 118.15281 * 13 3 2 15 15 O 1.35112 * 120.00258 * 186.17350 * 14 13 3 16 16 N 1.37449 * 119.99722 * 6.17604 * 14 13 3 17 17 C 1.39808 * 119.99629 * 185.96370 * 16 14 13 18 18 S 1.76191 * 126.07448 * 35.43143 * 17 16 14 19 19 C 1.70946 * 90.33490 * 179.97438 * 18 17 16 20 20 C 1.50710 * 124.84279 * 180.02562 * 19 18 17 21 21 N 1.28896 * 110.32142 * 0.34966 * 19 18 17 22 22 C 1.31903 * 117.18858 * 359.72266 * 21 19 18 23 23 C 1.50697 * 122.85364 * 180.02562 * 22 21 19 24 24 H 1.08994 * 109.47056 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46788 * 299.99917 * 1 2 3 26 26 H 1.09000 * 109.47183 * 59.99680 * 1 2 3 27 27 H 1.09000 * 109.46788 * 240.00082 * 2 1 3 28 28 H 1.08993 * 109.46911 * 119.99695 * 2 1 3 29 29 H 0.96997 * 120.00430 * 355.06198 * 8 7 5 30 30 H 0.96693 * 114.00376 * 181.91901 * 15 14 13 31 31 H 0.96996 * 120.00040 * 5.95818 * 16 14 13 32 32 H 1.08997 * 109.47171 * 270.32003 * 20 19 18 33 33 H 1.09003 * 109.46545 * 30.31779 * 20 19 18 34 34 H 1.08995 * 109.46789 * 150.31550 * 20 19 18 35 35 H 1.08997 * 109.46946 * 269.97401 * 23 22 21 36 36 H 1.08999 * 109.47114 * 29.97811 * 23 22 21 37 37 H 1.09005 * 109.47127 * 149.97797 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6225 1.9755 0.8543 5 6 3.5441 1.4435 0.0936 6 1 4.1410 1.5002 -0.8048 7 6 4.1583 1.3721 1.3259 8 7 3.4374 1.1855 2.4100 9 14 6.0141 1.5406 1.4558 10 1 6.4229 1.4292 2.8790 11 1 6.6653 0.4636 0.6676 12 1 6.4296 2.8634 0.9241 13 7 1.6274 2.1064 -1.2390 14 6 0.8447 3.1449 -1.1912 15 8 0.3634 3.6813 -2.3341 16 7 0.5076 3.6961 0.0219 17 6 -0.4299 4.7315 0.0829 18 16 -1.8526 4.9046 -0.9420 19 6 -2.2737 6.3491 -0.1306 20 6 -3.4831 7.1919 -0.4445 21 7 -1.4057 6.6185 0.7834 22 6 -0.4021 5.7750 0.9289 23 6 0.6832 5.9651 1.9570 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.4693 1.1698 2.3520 30 1 -0.1848 4.4664 -2.1998 31 1 0.9200 3.3667 0.8357 32 1 -3.2234 7.9325 -1.2009 33 1 -4.2829 6.5537 -0.8203 34 1 -3.8175 7.6987 0.4606 35 1 1.4957 6.5484 1.5238 36 1 0.2774 6.4924 2.8203 37 1 1.0614 4.9920 2.2703 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331045821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:30 Heat of formation + Delta-G solvation = 24.595412 kcal Electronic energy + Delta-G solvation = -20417.739592 eV Core-core repulsion = 17322.632785 eV Total energy + Delta-G solvation = -3095.106807 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28479 -39.06774 -36.19859 -34.82838 -32.78147 -31.87983 -30.86346 -29.27846 -26.94607 -26.04369 -23.34138 -22.87342 -21.70447 -20.04191 -19.74028 -19.14426 -17.32007 -16.95162 -16.79385 -15.32008 -15.15145 -14.55435 -14.11788 -13.82775 -13.79406 -13.50795 -13.35940 -13.09730 -12.83308 -12.65981 -12.50831 -12.33734 -12.19654 -11.72002 -11.45856 -11.03917 -10.89437 -10.72319 -10.45832 -10.18303 -10.13164 -9.83248 -9.39352 -9.11722 -8.78145 -8.39728 -8.29569 -7.36225 -6.48789 -4.20620 0.52352 0.91728 1.47122 2.61078 3.15609 3.32244 3.40506 3.41114 3.59881 3.79130 4.00949 4.45241 4.83185 5.06637 5.17324 5.22906 5.23005 5.50907 5.66250 5.68935 5.82309 5.88048 5.97015 6.02641 6.13990 6.24187 6.39151 6.48798 6.62843 6.90281 7.01226 7.18712 7.35242 7.63014 7.88866 8.07095 8.32289 8.68846 9.01269 9.50357 10.87545 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.005217 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.905575 B = 5366.093493 C = 6018.753789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C 0.210 3.790 4 H 0.004 0.996 5 C -0.583 4.583 6 H 0.059 0.941 7 C 0.021 3.979 8 N -0.909 5.909 9 Si 1.071 2.929 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.288 1.288 13 N -0.528 5.528 14 C 0.508 3.492 15 O -0.460 6.460 16 N -0.666 5.666 17 C 0.021 3.979 18 S 0.090 5.910 19 C 0.031 3.969 20 C -0.072 4.072 21 N -0.441 5.441 22 C 0.023 3.977 23 C -0.073 4.073 24 H 0.041 0.959 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.266 0.734 30 H 0.383 0.617 31 H 0.431 0.569 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.924 10.324 -3.436 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C 0.102 3.898 4 H 0.022 0.978 5 C -0.622 4.622 6 H 0.078 0.922 7 C -0.183 4.183 8 N -0.545 5.545 9 Si 0.899 3.101 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.267 5.267 14 C 0.194 3.806 15 O -0.257 6.257 16 N -0.319 5.319 17 C -0.200 4.200 18 S 0.339 5.661 19 C -0.249 4.249 20 C -0.132 4.132 21 N -0.155 5.155 22 C -0.113 4.113 23 C -0.132 4.132 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.241 0.759 31 H 0.278 0.722 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.434 9.148 -3.934 15.163 hybrid contribution -1.145 0.813 0.738 1.586 sum -12.579 9.961 -3.196 16.361 Atomic orbital electron populations 1.21863 0.98630 1.00059 1.00321 1.21659 0.92291 0.98816 1.01601 1.19303 0.96487 0.90164 0.83817 0.97843 1.21902 0.89708 1.55100 0.95475 0.92246 1.25898 1.07293 0.93272 0.91850 1.70862 1.07694 1.45389 1.30572 0.83494 0.73852 0.76724 0.76023 1.20721 1.21209 1.21419 1.72284 1.13600 1.07565 1.33247 1.20750 0.92068 0.91377 0.76381 1.85011 1.67283 1.46536 1.26917 1.43447 1.41861 1.35752 1.10822 1.23502 0.95282 0.95895 1.05323 1.84121 1.18388 1.25098 1.38475 1.26656 1.01734 0.99155 0.97345 1.20392 0.91178 0.98149 1.03489 1.66078 1.02390 1.28969 1.18091 1.20297 0.98286 0.89887 1.02831 1.20266 0.94254 1.03078 0.95611 0.93944 0.94258 0.93538 0.92418 0.91743 0.92274 0.75914 0.72217 0.89733 0.90218 0.89265 0.90518 0.90450 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.79 37.16 0.36 -2.61 16 2 C -0.10 -2.44 5.50 -26.73 -0.15 -2.59 16 3 C 0.21 5.23 1.89 -69.09 -0.13 5.09 16 4 H 0.00 0.10 4.21 -51.93 -0.22 -0.12 16 5 C -0.58 -16.26 8.63 -34.44 -0.30 -16.56 16 6 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 7 C 0.02 0.58 5.45 -17.82 -0.10 0.48 16 8 N -0.91 -25.80 13.63 55.43 0.76 -25.04 16 9 Si 1.07 24.74 29.91 -169.99 -5.08 19.66 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 13 N -0.53 -12.65 9.60 -57.10 -0.55 -13.20 16 14 C 0.51 10.42 8.73 -88.44 -0.77 9.65 16 15 O -0.46 -8.41 13.41 -17.04 -0.23 -8.64 16 16 N -0.67 -12.08 5.16 -12.54 -0.06 -12.15 16 17 C 0.02 0.32 6.56 -15.27 -0.10 0.22 16 18 S 0.09 1.09 20.16 -107.50 -2.17 -1.08 16 19 C 0.03 0.36 7.37 -13.51 -0.10 0.26 16 20 C -0.07 -0.52 10.46 36.01 0.38 -0.14 16 21 N -0.44 -6.16 10.53 -7.90 -0.08 -6.25 16 22 C 0.02 0.34 6.77 -83.93 -0.57 -0.23 16 23 C -0.07 -1.00 10.20 36.00 0.37 -0.63 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.92 7.71 -51.93 -0.40 0.52 16 27 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.06 1.58 7.84 -51.93 -0.41 1.17 16 29 H 0.27 7.44 6.39 -40.82 -0.26 7.18 16 30 H 0.38 5.64 4.87 65.81 0.32 5.96 16 31 H 0.43 8.39 5.46 -40.82 -0.22 8.17 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.07 7.31 -51.93 -0.38 0.69 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -31.29 321.82 -7.83 -39.12 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -4.16 Total: 9.79 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -1.11 Total: -7.07 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.06 Total: -56.64 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.23 Total: -8.64 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.17 Total: -1.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.29 -7.83 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331045821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.716 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds