Wall clock time and date at job start Tue Mar 31 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47268 * 2 1 4 4 N 1.46502 * 109.47275 * 183.01940 * 3 2 1 5 5 C 1.36927 * 120.00262 * 291.26530 * 4 3 2 6 6 H 1.07998 * 120.00200 * 356.00414 * 5 4 3 7 7 C 1.38820 * 120.00160 * 176.00168 * 5 4 3 8 8 N 1.31618 * 119.99873 * 39.80310 * 7 5 4 9 9 Si 1.86799 * 119.99867 * 219.80953 * 7 5 4 10 10 H 1.48500 * 109.47164 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47162 * 119.99939 * 9 7 5 12 12 H 1.48497 * 109.46918 * 239.99654 * 9 7 5 13 13 C 1.46506 * 119.99513 * 111.53869 * 4 3 2 14 14 C 1.50693 * 109.47036 * 263.33607 * 13 4 3 15 15 C 1.38272 * 119.95314 * 263.30026 * 14 13 4 16 16 C 1.38127 * 120.06993 * 179.72823 * 15 14 13 17 17 C 1.38766 * 119.96821 * 0.54710 * 16 15 14 18 18 O 1.35897 * 120.04995 * 179.70676 * 17 16 15 19 19 C 1.42899 * 117.00075 * 0.02562 * 18 17 16 20 20 C 1.38691 * 119.90264 * 359.72202 * 17 16 15 21 21 C 1.38282 * 119.93123 * 0.02562 * 20 17 16 22 22 Cl 1.73597 * 119.98184 * 179.97438 * 21 20 17 23 23 H 1.09001 * 109.46844 * 60.00291 * 1 2 3 24 24 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47330 * 300.00091 * 1 2 3 26 26 H 1.08997 * 109.47330 * 239.99909 * 2 1 3 27 27 H 1.09004 * 109.46819 * 120.00236 * 2 1 3 28 28 H 1.09008 * 109.47093 * 63.02198 * 3 2 1 29 29 H 1.08996 * 109.47457 * 303.02589 * 3 2 1 30 30 H 0.96999 * 119.99872 * 183.49004 * 8 7 5 31 31 H 1.09000 * 109.47319 * 23.34089 * 13 4 3 32 32 H 1.08999 * 109.46628 * 143.33640 * 13 4 3 33 33 H 1.07996 * 119.96141 * 0.02562 * 15 14 13 34 34 H 1.07995 * 120.01604 * 180.25245 * 16 15 14 35 35 H 1.09003 * 109.47406 * 59.99574 * 19 18 17 36 36 H 1.08996 * 109.47484 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47176 * 299.99970 * 19 18 17 38 38 H 1.08002 * 120.03124 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5032 1.4431 -0.0728 5 6 4.2417 0.9939 0.9892 6 1 3.7487 0.7000 1.9040 7 6 5.6242 0.9164 0.8900 8 7 6.2939 1.8664 0.2724 9 14 6.5339 -0.5362 1.6328 10 1 5.5587 -1.4591 2.2672 11 1 7.2742 -1.2551 0.5650 12 1 7.4921 -0.0487 2.6573 13 6 4.1763 1.9299 -1.2796 14 6 4.5272 0.7619 -2.1648 15 6 5.7966 0.2158 -2.1164 16 6 6.1191 -0.8583 -2.9226 17 6 5.1717 -1.3828 -3.7903 18 8 5.4891 -2.4358 -4.5886 19 6 6.8167 -2.9536 -4.4822 20 6 3.9005 -0.8306 -3.8419 21 6 3.5804 0.2414 -3.0292 22 17 1.9899 0.9340 -3.0932 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.7215 1.9404 0.9159 29 1 1.6331 1.9717 -0.8616 30 1 7.2540 1.7875 0.1587 31 1 3.5129 2.6071 -1.8175 32 1 5.0867 2.4596 -0.9991 33 1 6.5351 0.6266 -1.4440 34 1 7.1096 -1.2867 -2.8812 35 1 6.9926 -3.2958 -3.4623 36 1 6.9373 -3.7889 -5.1719 37 1 7.5331 -2.1708 -4.7314 38 1 3.1614 -1.2375 -4.5162 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352650607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:36 Heat of formation + Delta-G solvation = 7.121466 kcal Electronic energy + Delta-G solvation = -21120.150173 eV Core-core repulsion = 17989.949181 eV Total energy + Delta-G solvation = -3130.200992 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.71005 -37.66981 -35.90743 -35.60808 -33.08294 -31.04219 -30.46668 -29.62508 -27.35484 -25.58610 -25.17744 -22.37900 -21.93394 -20.54825 -19.97089 -17.84461 -16.91157 -15.93910 -15.50604 -15.06640 -14.75049 -14.43172 -14.28692 -13.83945 -13.54164 -13.12063 -12.99218 -12.75517 -12.51731 -11.96126 -11.71669 -11.60031 -11.43262 -11.25549 -11.09612 -10.73489 -10.68505 -10.43149 -10.39520 -10.21587 -10.07674 -9.85056 -9.73768 -9.62234 -8.46836 -8.23964 -7.47529 -6.96299 -5.85540 -3.10309 1.75532 2.01112 2.63884 3.35726 3.47991 3.53525 3.64969 4.25092 4.52557 5.10366 5.15202 5.25877 5.35326 5.46597 5.53976 5.58641 5.74741 5.76914 5.82788 5.97026 6.09643 6.15529 6.29541 6.41398 6.52126 6.58457 6.62648 6.70737 6.77949 7.00685 7.03063 7.20667 7.22712 7.37120 7.70631 7.76633 7.80006 8.33870 9.11512 9.82590 10.25791 11.07034 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.011869 B = 0.009860 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.444701 B = 2839.152004 C = 4332.365306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.150 3.850 4 N -0.582 5.582 5 C -0.235 4.235 6 H 0.079 0.921 7 C 0.003 3.997 8 N -0.873 5.873 9 Si 0.856 3.144 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.295 1.295 13 C 0.152 3.848 14 C -0.083 4.083 15 C -0.050 4.050 16 C -0.212 4.212 17 C 0.112 3.888 18 O -0.323 6.323 19 C 0.031 3.969 20 C -0.158 4.158 21 C 0.001 3.999 22 Cl -0.074 7.074 23 H 0.045 0.955 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.253 0.747 31 H 0.033 0.967 32 H 0.138 0.862 33 H 0.152 0.848 34 H 0.120 0.880 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 -4.275 -8.093 9.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.024 3.976 4 N -0.300 5.300 5 C -0.363 4.363 6 H 0.097 0.903 7 C -0.193 4.193 8 N -0.520 5.520 9 Si 0.685 3.315 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.223 1.223 13 C 0.026 3.974 14 C -0.087 4.087 15 C -0.069 4.069 16 C -0.231 4.231 17 C 0.067 3.933 18 O -0.237 6.237 19 C -0.065 4.065 20 C -0.177 4.177 21 C -0.026 4.026 22 Cl -0.045 7.045 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.155 0.845 33 H 0.169 0.831 34 H 0.138 0.862 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.861 -4.225 -8.168 9.630 hybrid contribution 0.660 -1.199 0.409 1.428 sum -2.201 -5.424 -7.759 9.719 Atomic orbital electron populations 1.21707 0.97548 1.00336 1.00671 1.22045 0.93403 1.00409 1.02047 1.20915 0.84051 0.94010 0.98614 1.44105 0.99881 1.73662 1.12386 1.19193 0.88870 1.34279 0.93911 0.90336 1.24332 0.95670 0.98783 1.00551 1.70049 1.06850 1.28460 1.46634 0.86891 0.79890 0.86221 0.78512 1.20443 1.21307 1.22273 1.20738 1.01226 0.90772 0.84626 1.20867 0.91634 1.01187 0.94988 1.21529 0.97085 0.92866 0.95430 1.21363 0.99394 1.01425 1.00938 1.18639 0.93728 0.88720 0.92190 1.85978 1.31933 1.45771 1.60002 1.22965 0.82447 0.98787 1.02285 1.19938 0.95241 0.98644 1.03890 1.20535 0.86536 0.96219 0.99293 1.98306 1.24642 1.84000 1.97589 0.93610 0.93847 0.93494 0.92200 0.92560 0.95342 0.93127 0.93571 0.94896 0.84519 0.83091 0.86204 0.92858 0.88740 0.92861 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.91 37.16 0.37 -1.86 16 2 C -0.14 -2.65 5.61 -26.74 -0.15 -2.80 16 3 C 0.15 3.07 5.10 -4.04 -0.02 3.05 16 4 N -0.58 -13.73 2.63 -174.61 -0.46 -14.19 16 5 C -0.23 -6.09 9.14 -15.06 -0.14 -6.22 16 6 H 0.08 2.06 8.05 -52.49 -0.42 1.64 16 7 C 0.00 0.08 3.61 -17.43 -0.06 0.02 16 8 N -0.87 -22.57 8.68 55.49 0.48 -22.09 16 9 Si 0.86 20.62 29.67 -169.99 -5.04 15.57 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 C 0.15 3.47 4.88 -5.19 -0.03 3.45 16 14 C -0.08 -1.78 5.34 -104.57 -0.56 -2.34 16 15 C -0.05 -1.07 8.75 -39.61 -0.35 -1.42 16 16 C -0.21 -4.00 9.04 -39.43 -0.36 -4.36 16 17 C 0.11 2.04 6.69 -39.22 -0.26 1.78 16 18 O -0.32 -5.19 10.50 -19.42 -0.20 -5.40 16 19 C 0.03 0.36 9.81 101.05 0.99 1.35 16 20 C -0.16 -2.89 9.77 -39.40 -0.38 -3.28 16 21 C 0.00 0.03 6.07 -39.52 -0.24 -0.21 16 22 Cl -0.07 -1.29 23.36 -51.86 -1.21 -2.50 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.21 6.69 -51.93 -0.35 0.86 16 27 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 28 H 0.03 0.59 8.14 -51.92 -0.42 0.16 16 29 H 0.05 0.97 5.96 -51.93 -0.31 0.66 16 30 H 0.25 6.30 8.05 -40.82 -0.33 5.97 16 31 H 0.03 0.71 6.78 -51.93 -0.35 0.35 16 32 H 0.14 3.46 4.90 -51.93 -0.25 3.21 16 33 H 0.15 3.46 5.14 -52.49 -0.27 3.19 16 34 H 0.12 1.99 6.30 -52.49 -0.33 1.65 16 35 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 38 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 313.79 15.07 4.73 4.73 Total: -1.00 -26.75 313.79 -8.05 -34.80 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.16 Total: 1.92 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -1.18 Total: -12.84 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.02 Total: -36.29 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.20 Total: -5.40 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.04 Total: 15.57 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.21 Total: -2.50 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.75 -8.05 -34.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352650607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.920 kcal (2) G-P(sol) polarization free energy of solvation -26.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds