Wall clock time and date at job start Tue Mar 31 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47268 * 2 1 4 4 N 1.46502 * 109.47275 * 183.01940 * 3 2 1 5 5 C 1.36927 * 120.00262 * 291.26530 * 4 3 2 6 6 H 1.07998 * 120.00200 * 356.00414 * 5 4 3 7 7 C 1.38820 * 120.00160 * 176.00168 * 5 4 3 8 8 N 1.31618 * 119.99873 * 39.80310 * 7 5 4 9 9 Si 1.86799 * 119.99867 * 219.80953 * 7 5 4 10 10 H 1.48500 * 109.47164 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47162 * 119.99939 * 9 7 5 12 12 H 1.48497 * 109.46918 * 239.99654 * 9 7 5 13 13 C 1.46506 * 119.99513 * 111.53869 * 4 3 2 14 14 C 1.50693 * 109.47036 * 263.33607 * 13 4 3 15 15 C 1.38272 * 119.95314 * 263.30026 * 14 13 4 16 16 C 1.38127 * 120.06993 * 179.72823 * 15 14 13 17 17 C 1.38766 * 119.96821 * 0.54710 * 16 15 14 18 18 O 1.35897 * 120.04995 * 179.70676 * 17 16 15 19 19 C 1.42899 * 117.00075 * 0.02562 * 18 17 16 20 20 C 1.38691 * 119.90264 * 359.72202 * 17 16 15 21 21 C 1.38282 * 119.93123 * 0.02562 * 20 17 16 22 22 Cl 1.73597 * 119.98184 * 179.97438 * 21 20 17 23 23 H 1.09001 * 109.46844 * 60.00291 * 1 2 3 24 24 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47330 * 300.00091 * 1 2 3 26 26 H 1.08997 * 109.47330 * 239.99909 * 2 1 3 27 27 H 1.09004 * 109.46819 * 120.00236 * 2 1 3 28 28 H 1.09008 * 109.47093 * 63.02198 * 3 2 1 29 29 H 1.08996 * 109.47457 * 303.02589 * 3 2 1 30 30 H 0.96999 * 119.99872 * 183.49004 * 8 7 5 31 31 H 1.09000 * 109.47319 * 23.34089 * 13 4 3 32 32 H 1.08999 * 109.46628 * 143.33640 * 13 4 3 33 33 H 1.07996 * 119.96141 * 0.02562 * 15 14 13 34 34 H 1.07995 * 120.01604 * 180.25245 * 16 15 14 35 35 H 1.09003 * 109.47406 * 59.99574 * 19 18 17 36 36 H 1.08996 * 109.47484 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47176 * 299.99970 * 19 18 17 38 38 H 1.08002 * 120.03124 * 180.02562 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5032 1.4431 -0.0728 5 6 4.2417 0.9939 0.9892 6 1 3.7487 0.7000 1.9040 7 6 5.6242 0.9164 0.8900 8 7 6.2939 1.8664 0.2724 9 14 6.5339 -0.5362 1.6328 10 1 5.5587 -1.4591 2.2672 11 1 7.2742 -1.2551 0.5650 12 1 7.4921 -0.0487 2.6573 13 6 4.1763 1.9299 -1.2796 14 6 4.5272 0.7619 -2.1648 15 6 5.7966 0.2158 -2.1164 16 6 6.1191 -0.8583 -2.9226 17 6 5.1717 -1.3828 -3.7903 18 8 5.4891 -2.4358 -4.5886 19 6 6.8167 -2.9536 -4.4822 20 6 3.9005 -0.8306 -3.8419 21 6 3.5804 0.2414 -3.0292 22 17 1.9899 0.9340 -3.0932 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.7215 1.9404 0.9159 29 1 1.6331 1.9717 -0.8616 30 1 7.2540 1.7875 0.1587 31 1 3.5129 2.6071 -1.8175 32 1 5.0867 2.4596 -0.9991 33 1 6.5351 0.6266 -1.4440 34 1 7.1096 -1.2867 -2.8812 35 1 6.9926 -3.2958 -3.4623 36 1 6.9373 -3.7889 -5.1719 37 1 7.5331 -2.1708 -4.7314 38 1 3.1614 -1.2375 -4.5162 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352650607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:36 Heat of formation + Delta-G solvation = -5.451326 kcal Electronic energy + Delta-G solvation = -21120.695370 eV Core-core repulsion = 17989.949181 eV Total energy + Delta-G solvation = -3130.746189 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.108 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09450 -39.13775 -37.51534 -37.06780 -34.73334 -32.80254 -31.93640 -31.17984 -28.50319 -27.32067 -26.73462 -23.97282 -23.41942 -22.04747 -21.65860 -19.20403 -18.74514 -17.38557 -16.78167 -16.66958 -16.31979 -16.02689 -15.75629 -15.60940 -14.90290 -14.78734 -14.55958 -14.20454 -13.96996 -13.35035 -13.17105 -13.09738 -12.83749 -12.79716 -12.70287 -12.48456 -12.26957 -12.12049 -11.85267 -11.82286 -11.61523 -11.51653 -11.47920 -11.20026 -10.36071 -9.72228 -8.98548 -8.83412 -7.79407 -5.06605 0.25629 0.50511 1.19036 1.41320 1.50768 1.57397 2.44140 2.55559 2.74792 3.14539 3.83397 3.90652 4.04477 4.21876 4.30736 4.33405 4.36024 4.47163 4.51795 4.57732 4.69676 4.71509 4.83929 4.88686 4.98556 5.03758 5.17861 5.27455 5.28060 5.43618 5.47953 5.63015 5.68487 5.71869 5.79362 5.93998 6.39504 6.46271 7.18541 7.94731 8.34909 9.10079 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.011869 B = 0.009860 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.444701 B = 2839.152004 C = 4332.365306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.149 3.851 4 N -0.593 5.593 5 C -0.249 4.249 6 H 0.067 0.933 7 C -0.019 4.019 8 N -0.883 5.883 9 Si 0.895 3.105 10 H -0.286 1.286 11 H -0.283 1.283 12 H -0.300 1.300 13 C 0.158 3.842 14 C -0.104 4.104 15 C -0.069 4.069 16 C -0.215 4.215 17 C 0.120 3.880 18 O -0.327 6.327 19 C 0.019 3.981 20 C -0.159 4.159 21 C -0.001 4.001 22 Cl -0.058 7.058 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.253 0.747 31 H 0.039 0.961 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.053 0.947 36 H 0.128 0.872 37 H 0.063 0.937 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 -5.652 -9.457 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.169 4.169 3 C 0.024 3.976 4 N -0.312 5.312 5 C -0.377 4.377 6 H 0.085 0.915 7 C -0.216 4.216 8 N -0.531 5.531 9 Si 0.724 3.276 10 H -0.212 1.212 11 H -0.210 1.210 12 H -0.228 1.228 13 C 0.032 3.968 14 C -0.107 4.107 15 C -0.089 4.089 16 C -0.233 4.233 17 C 0.075 3.925 18 O -0.241 6.241 19 C -0.075 4.075 20 C -0.179 4.179 21 C -0.029 4.029 22 Cl -0.029 7.029 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.081 0.919 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.523 -5.609 -9.545 11.618 hybrid contribution 0.881 -0.796 0.774 1.418 sum -2.641 -6.404 -8.771 11.177 Atomic orbital electron populations 1.21632 0.94506 1.01645 1.01661 1.21896 0.95974 0.98695 1.00376 1.21028 0.82568 0.95152 0.98857 1.44241 1.01005 1.73753 1.12163 1.19245 0.89315 1.34815 0.94365 0.91483 1.24629 0.96024 0.99588 1.01335 1.70125 1.06870 1.28870 1.47194 0.86311 0.78863 0.84555 0.77829 1.21179 1.20969 1.22772 1.20509 1.00092 0.91441 0.84710 1.20693 0.92502 1.01388 0.96141 1.21415 0.96912 0.94237 0.96306 1.21505 1.00638 1.00677 1.00508 1.18709 0.93400 0.88798 0.91627 1.85991 1.34274 1.44692 1.59168 1.23332 0.80666 1.00080 1.03424 1.20191 0.95922 0.98074 1.03667 1.20555 0.86947 0.96455 0.98904 1.98300 1.23267 1.83822 1.97502 0.92622 0.92404 0.92496 0.93423 0.94623 0.95784 0.91935 0.93573 0.94254 0.87139 0.85066 0.84221 0.92817 0.85372 0.91871 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.91 71.98 0.71 -3.18 16 2 C -0.13 -4.82 5.61 30.59 0.17 -4.65 16 3 C 0.15 6.04 5.10 86.38 0.44 6.48 16 4 N -0.59 -28.25 2.63 -706.35 -1.86 -30.11 16 5 C -0.25 -13.13 9.14 84.04 0.77 -12.36 16 6 H 0.07 3.61 8.05 -2.91 -0.02 3.59 16 7 C -0.02 -1.02 3.61 84.86 0.31 -0.72 16 8 N -0.88 -46.62 8.68 21.65 0.19 -46.43 16 9 Si 0.89 42.77 29.67 68.60 2.04 44.80 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 13 C 0.16 7.31 4.88 85.63 0.42 7.73 16 14 C -0.10 -4.45 5.34 -19.83 -0.11 -4.56 16 15 C -0.07 -2.98 8.75 22.25 0.19 -2.78 16 16 C -0.21 -7.82 9.04 22.37 0.20 -7.62 16 17 C 0.12 4.13 6.69 22.50 0.15 4.28 16 18 O -0.33 -9.57 10.50 -92.39 -0.97 -10.54 16 19 C 0.02 0.40 9.81 113.37 1.11 1.51 16 20 C -0.16 -5.53 9.77 22.39 0.22 -5.31 16 21 C 0.00 -0.05 6.07 22.31 0.14 0.09 16 22 Cl -0.06 -1.92 23.36 -2.72 -0.06 -1.99 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.88 6.69 -2.39 -0.02 1.86 16 27 H 0.03 1.44 7.95 -2.38 -0.02 1.43 16 28 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.06 2.34 5.96 -2.39 -0.01 2.33 16 30 H 0.25 12.87 8.05 -92.71 -0.75 12.13 16 31 H 0.04 1.70 6.78 -2.39 -0.02 1.69 16 32 H 0.11 5.77 4.90 -2.39 -0.01 5.75 16 33 H 0.13 6.14 5.14 -2.91 -0.01 6.12 16 34 H 0.14 4.38 6.30 -2.91 -0.02 4.37 16 35 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 36 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.19 7.66 -2.39 -0.02 1.17 16 38 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -56.89 313.79 5.14 -51.75 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.08 Total: 13.61 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 4.73 Total: -21.09 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -1.67 Total: -76.54 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.97 Total: -10.54 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.04 Total: 44.80 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.06 Total: -1.99 kcal Total: -56.89 5.14 -51.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352650607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.295 kcal (2) G-P(sol) polarization free energy of solvation -56.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds