Wall clock time and date at job start Tue Mar 31 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35617 * 117.00233 * 2 1 4 4 N 1.32666 * 120.49160 * 359.97438 * 3 2 1 5 5 C 1.32519 * 120.70994 * 180.02562 * 4 3 2 6 6 S 1.76195 * 119.12275 * 179.97438 * 5 4 3 7 7 C 1.80998 * 100.00397 * 180.02562 * 6 5 4 8 8 N 1.32425 * 121.75971 * 359.97438 * 5 4 3 9 9 C 1.32524 * 120.93309 * 359.77819 * 8 5 4 10 10 C 1.38716 * 119.18128 * 0.47232 * 9 8 5 11 11 N 1.40371 * 120.79955 * 179.78927 * 10 9 8 12 12 C 1.46504 * 119.99564 * 359.71837 * 11 10 9 13 13 C 1.53006 * 109.46883 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47242 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99967 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00542 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00563 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99513 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46964 * 90.00276 * 19 17 15 21 21 H 1.48502 * 109.47035 * 210.00108 * 19 17 15 22 22 H 1.48499 * 109.47257 * 330.00183 * 19 17 15 23 23 H 1.09011 * 109.46595 * 299.99851 * 1 2 3 24 24 H 1.08998 * 109.47461 * 59.99148 * 1 2 3 25 25 H 1.08995 * 109.47527 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46958 * 299.99818 * 7 6 5 27 27 H 1.08998 * 109.46828 * 59.99802 * 7 6 5 28 28 H 1.09002 * 109.47637 * 180.02562 * 7 6 5 29 29 H 1.07993 * 120.40795 * 180.23919 * 9 8 5 30 30 H 0.96992 * 120.00469 * 179.72048 * 11 10 9 31 31 H 1.09001 * 109.46891 * 60.00226 * 12 11 10 32 32 H 1.08993 * 109.47378 * 299.99598 * 12 11 10 33 33 H 1.09001 * 109.46801 * 300.00349 * 13 12 11 34 34 H 1.09001 * 109.46998 * 59.99945 * 13 12 11 35 35 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 36 36 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 37 37 H 0.96999 * 120.00061 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 7 1.3318 2.3271 -0.0005 5 6 1.9290 3.5102 -0.0010 6 16 0.9413 4.9693 -0.0024 7 6 2.2412 6.2288 -0.0034 8 7 3.2482 3.6250 -0.0005 9 6 4.0255 2.5517 0.0049 10 6 3.4412 1.2935 0.0001 11 7 4.2321 0.1338 0.0012 12 6 5.6930 0.2436 0.0011 13 6 6.3096 -1.1568 0.0030 14 6 7.8353 -1.0422 0.0036 15 6 8.4426 -2.4214 0.0049 16 1 7.8042 -3.2926 0.0048 17 6 9.8132 -2.5712 0.0061 18 7 10.3432 -3.7748 0.0067 19 14 10.9174 -1.0644 0.0070 20 1 11.2087 -0.6651 1.4073 21 1 12.1886 -1.3819 -0.6919 22 1 10.2326 0.0515 -0.6937 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 2.8596 6.1134 0.8867 27 1 2.8597 6.1118 -0.8933 28 1 1.7870 7.2197 -0.0039 29 1 5.1004 2.6552 0.0091 30 1 3.8114 -0.7401 0.0019 31 1 6.0168 0.7839 0.8907 32 1 6.0169 0.7823 -0.8893 33 1 5.9856 -1.6951 0.8937 34 1 5.9858 -1.6975 -0.8863 35 1 8.1595 -0.5036 -0.8868 36 1 8.1587 -0.5016 0.8932 37 1 11.3074 -3.8802 0.0072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430680.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:42 Heat of formation + Delta-G solvation = -20.628110 kcal Electronic energy + Delta-G solvation = -19228.896046 eV Core-core repulsion = 16131.828200 eV Total energy + Delta-G solvation = -3097.067846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.20064 -39.41750 -38.01392 -35.62061 -34.21341 -33.76467 -31.19219 -29.79670 -28.47069 -28.40192 -25.43329 -24.92967 -23.52306 -22.06855 -20.15040 -19.46428 -18.81186 -18.09337 -17.39762 -17.27732 -16.35360 -16.30457 -15.95289 -15.69284 -15.53520 -15.30022 -14.76884 -14.58283 -14.33545 -13.96874 -13.75748 -13.47571 -13.05936 -12.88376 -12.70535 -12.68034 -12.44939 -12.10520 -11.78793 -11.67939 -11.51078 -11.49299 -11.31589 -11.01732 -10.75223 -10.54048 -9.43084 -8.28274 -8.11610 -6.33193 -0.09631 -0.00080 0.31153 1.29783 1.39381 1.41248 1.52774 1.85447 2.24168 2.38130 2.58848 3.07827 3.10773 3.59215 3.74113 3.93213 4.10460 4.22146 4.37182 4.40319 4.41829 4.43859 4.53174 4.69823 4.80543 4.91437 4.96530 5.03571 5.05375 5.46406 5.58145 5.64357 5.69455 5.79370 6.15185 6.29144 6.57134 6.75940 6.80700 7.31793 8.88637 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.003214 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.682842 B = 8708.679769 C = 9870.008835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.312 6.312 3 C 0.297 3.703 4 N -0.530 5.530 5 C 0.247 3.753 6 S -0.022 6.022 7 C -0.130 4.130 8 N -0.504 5.504 9 C 0.090 3.910 10 C 0.107 3.893 11 N -0.720 5.720 12 C 0.128 3.872 13 C -0.103 4.103 14 C -0.009 4.009 15 C -0.535 4.535 16 H 0.029 0.971 17 C 0.000 4.000 18 N -0.955 5.955 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.289 1.289 22 H -0.238 1.238 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.126 0.874 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.131 0.869 29 H 0.194 0.806 30 H 0.409 0.591 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.539 19.125 -0.032 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.217 6.217 3 C 0.101 3.899 4 N -0.262 5.262 5 C -0.130 4.130 6 S 0.209 5.791 7 C -0.299 4.299 8 N -0.224 5.224 9 C -0.080 4.080 10 C -0.005 4.005 11 N -0.351 5.351 12 C 0.005 3.995 13 C -0.141 4.141 14 C -0.047 4.047 15 C -0.573 4.573 16 H 0.048 0.952 17 C -0.196 4.196 18 N -0.596 5.596 19 Si 0.776 3.224 20 H -0.192 1.192 21 H -0.215 1.215 22 H -0.161 1.161 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.144 0.856 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.149 0.851 29 H 0.211 0.789 30 H 0.245 0.755 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.841 19.767 -0.038 28.724 hybrid contribution 2.176 -1.590 0.023 2.695 sum -18.665 18.177 -0.015 26.053 Atomic orbital electron populations 1.23115 0.75131 1.04963 1.02428 1.86180 1.24874 1.22879 1.87751 1.19758 0.88155 0.85704 0.96312 1.67941 1.40205 0.97602 1.20486 1.24564 0.90985 0.95871 1.01591 1.85549 1.10010 0.91810 1.91769 1.23573 1.00253 0.99165 1.06922 1.68579 1.04246 1.33089 1.16497 1.22915 1.01380 0.84609 0.99070 1.18862 0.88320 0.91021 1.02340 1.44733 1.05109 1.04949 1.80297 1.21528 0.77849 0.98103 1.02064 1.21444 0.95901 0.95251 1.01473 1.19447 0.92990 0.94959 0.97274 1.21518 0.92132 0.93264 1.50371 0.95226 1.26090 1.00146 0.99306 0.94101 1.70081 1.12192 1.24536 1.52767 0.85614 0.77625 0.79897 0.79247 1.19159 1.21461 1.16134 0.92300 0.92310 0.85593 0.89424 0.89428 0.85111 0.78941 0.75471 0.90902 0.90970 0.92652 0.92664 0.95419 0.95539 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.41 113.37 1.18 1.85 16 2 O -0.31 -7.61 9.85 -89.29 -0.88 -8.49 16 3 C 0.30 8.04 7.55 84.97 0.64 8.68 16 4 N -0.53 -14.57 9.34 -308.98 -2.88 -17.45 16 5 C 0.25 6.44 7.85 180.48 1.42 7.86 16 6 S -0.02 -0.44 22.89 -56.49 -1.29 -1.73 16 7 C -0.13 -1.76 9.61 113.37 1.09 -0.67 16 8 N -0.50 -12.75 9.12 -196.31 -1.79 -14.54 16 9 C 0.09 2.20 10.58 84.70 0.90 3.09 16 10 C 0.11 2.79 6.72 38.29 0.26 3.05 16 11 N -0.72 -18.28 5.76 -338.10 -1.95 -20.22 16 12 C 0.13 3.35 4.96 86.38 0.43 3.78 16 13 C -0.10 -3.54 5.27 30.60 0.16 -3.37 16 14 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 15 C -0.53 -29.93 9.66 25.60 0.25 -29.68 16 16 H 0.03 1.84 7.99 -2.91 -0.02 1.81 16 17 C 0.00 0.00 5.47 84.65 0.46 0.46 16 18 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 19 Si 0.95 42.67 27.47 68.60 1.88 44.55 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 23 H 0.06 1.05 8.12 -2.38 -0.02 1.03 16 24 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 25 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.26 8.11 -2.39 -0.02 1.24 16 27 H 0.09 1.26 8.11 -2.40 -0.02 1.24 16 28 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.19 3.80 6.90 -2.91 -0.02 3.78 16 30 H 0.41 10.33 7.95 -92.71 -0.74 9.60 16 31 H 0.07 1.76 7.99 -2.39 -0.02 1.74 16 32 H 0.07 1.75 8.01 -2.39 -0.02 1.73 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.03 1.14 7.20 -2.39 -0.02 1.13 16 36 H 0.03 1.08 7.57 -2.39 -0.02 1.06 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -68.36 328.21 0.58 -67.78 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.28 Total: 14.54 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 6.90 Total: -5.22 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -6.32 Total: -111.44 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.88 Total: -8.49 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.88 Total: 44.55 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -1.29 Total: -1.73 kcal Total: -68.36 0.58 -67.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430680.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.153 kcal (2) G-P(sol) polarization free energy of solvation -68.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds