Wall clock time and date at job start Tue Mar 31 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35508 * 116.99671 * 2 1 4 4 N 1.32253 * 119.14077 * 359.97438 * 3 2 1 5 5 C 1.32515 * 120.91786 * 179.97438 * 4 3 2 6 6 C 1.38357 * 119.21415 * 0.28288 * 5 4 3 7 7 F 1.35105 * 120.78204 * 179.72305 * 6 5 4 8 8 C 1.39545 * 118.43430 * 359.47423 * 6 5 4 9 9 O 1.35563 * 120.49023 * 180.22403 * 8 6 5 10 10 C 1.42895 * 117.00222 * 180.30624 * 9 8 6 11 11 H 1.08998 * 110.64353 * 31.68203 * 10 9 8 12 12 C 1.55157 * 110.72387 * 155.02133 * 10 9 8 13 13 C 1.54909 * 101.58417 * 153.85942 * 12 10 9 14 14 N 1.47423 * 104.83465 * 322.99751 * 13 12 10 15 15 C 1.36937 * 125.64730 * 204.09332 * 14 13 12 16 16 H 1.08001 * 119.99513 * 180.02562 * 15 14 13 17 17 C 1.38808 * 119.99910 * 0.03762 * 15 14 13 18 18 N 1.31615 * 120.00435 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99849 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47179 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47188 * 119.99674 * 19 17 15 22 22 H 1.48500 * 109.47331 * 239.99732 * 19 17 15 23 23 C 1.47020 * 108.70308 * 24.12082 * 14 13 12 24 24 N 1.32281 * 119.13841 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46666 * 60.00178 * 1 2 3 26 26 H 1.09001 * 109.46905 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47006 * 300.00303 * 1 2 3 28 28 H 1.08002 * 120.38922 * 179.97438 * 5 4 3 29 29 H 1.08992 * 111.00550 * 271.93758 * 12 10 9 30 30 H 1.09003 * 110.99983 * 35.79260 * 12 10 9 31 31 H 1.09000 * 110.37037 * 204.15061 * 13 12 10 32 32 H 1.09003 * 110.45425 * 81.87800 * 13 12 10 33 33 H 0.96999 * 120.00409 * 179.97438 * 18 17 15 34 34 H 1.09003 * 109.88679 * 239.52877 * 23 14 13 35 35 H 1.09006 * 110.01107 * 118.43643 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3073 2.3056 -0.0005 5 6 1.8719 3.5045 0.0000 6 6 3.2521 3.6008 -0.0049 7 9 3.8610 4.8069 -0.0102 8 6 4.0005 2.4230 0.0010 9 8 5.3553 2.4689 0.0011 10 6 6.0468 1.2184 0.0006 11 1 5.4732 0.4623 -0.5354 12 6 7.4637 1.3748 -0.6120 13 6 8.2290 0.2159 0.0743 14 7 7.6893 0.1670 1.4453 15 6 8.3349 -0.3446 2.5393 16 1 7.8516 -0.3344 3.5051 17 6 9.6103 -0.8762 2.4068 18 7 10.1990 -0.8890 1.2298 19 14 10.4906 -1.5747 3.8990 20 1 9.6195 -1.4425 5.0945 21 1 10.7978 -3.0089 3.6661 22 1 11.7544 -0.8278 4.1229 23 6 6.3431 0.7578 1.4434 24 7 3.3661 1.2569 -0.0005 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.2619 4.3957 -0.0009 29 1 7.4388 1.2403 -1.6933 30 1 7.8984 2.3394 -0.3497 31 1 9.2982 0.4269 0.0947 32 1 8.0385 -0.7249 -0.4421 33 1 11.0904 -1.2601 1.1373 34 1 6.3123 1.6126 2.1191 35 1 5.6089 0.0140 1.7533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228465708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:02 Heat of formation + Delta-G solvation = -22.322936 kcal Electronic energy + Delta-G solvation = -22146.490158 eV Core-core repulsion = 18483.135643 eV Total energy + Delta-G solvation = -3663.354515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.93143 -41.49197 -39.43080 -38.11815 -36.39664 -33.61664 -32.36032 -30.76717 -29.28943 -27.73990 -27.44507 -25.17514 -24.16451 -23.61227 -20.70185 -20.34563 -19.30259 -18.63715 -17.71315 -17.18459 -16.90924 -16.85890 -15.83297 -15.44744 -15.08557 -14.74671 -14.40931 -14.21268 -14.04417 -13.41795 -13.32267 -12.97712 -12.49661 -12.27708 -12.10983 -11.83146 -11.55143 -11.48988 -11.03882 -10.93057 -10.82111 -10.52121 -10.12748 -9.89956 -9.84599 -9.62670 -9.50574 -8.72368 -8.69070 -6.89101 -5.69068 -3.11127 0.61938 0.78836 2.16543 2.80525 3.38614 3.39639 3.45066 3.47742 3.68041 3.83975 4.33044 4.47976 4.61678 4.87010 4.99811 5.01830 5.22902 5.31360 5.33820 5.46163 5.61152 5.72736 5.77204 6.19197 6.30920 6.41293 6.45777 6.48003 6.64149 6.81535 7.23143 7.42441 7.58800 7.74708 7.78580 8.29882 9.17637 9.77740 10.40852 11.35641 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022685 B = 0.004144 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.009797 B = 6754.740792 C = 7390.433461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.283 6.283 3 C 0.532 3.468 4 N -0.573 5.573 5 C 0.185 3.815 6 C -0.065 4.065 7 F -0.115 7.115 8 C 0.392 3.608 9 O -0.273 6.273 10 C 0.070 3.930 11 H 0.099 0.901 12 C -0.138 4.138 13 C 0.154 3.846 14 N -0.601 5.601 15 C -0.222 4.222 16 H 0.079 0.921 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.917 3.083 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.125 3.875 24 N -0.553 5.553 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.189 0.811 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.019 0.981 33 H 0.253 0.747 34 H 0.030 0.970 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.511 7.261 -5.241 20.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.184 6.184 3 C 0.229 3.771 4 N -0.307 5.307 5 C 0.023 3.977 6 C -0.091 4.091 7 F -0.094 7.094 8 C 0.202 3.798 9 O -0.174 6.174 10 C 0.015 3.985 11 H 0.117 0.883 12 C -0.176 4.176 13 C 0.029 3.971 14 N -0.328 5.328 15 C -0.350 4.350 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.748 3.252 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C -0.001 4.001 24 N -0.295 5.295 25 H 0.083 0.917 26 H 0.123 0.877 27 H 0.083 0.917 28 H 0.206 0.794 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.427 6.207 -5.176 20.122 hybrid contribution 0.671 0.455 0.750 1.105 sum -17.756 6.662 -4.426 19.474 Atomic orbital electron populations 1.23048 0.75324 1.03774 1.02968 1.86156 1.23545 1.22100 1.86558 1.20237 0.84626 0.84969 0.87245 1.68144 1.39994 0.98024 1.24556 1.22868 0.89505 0.95822 0.89543 1.18262 0.91957 0.80675 1.18189 1.91544 1.82921 1.40183 1.94772 1.19981 0.86391 0.87126 0.86317 1.86457 1.11191 1.35621 1.84150 1.23919 0.92862 0.82201 0.99543 0.88342 1.23290 0.92160 1.02787 0.99385 1.22005 1.00515 0.91713 0.82856 1.44370 1.11920 1.70697 1.05797 1.19135 0.97051 1.31617 0.87220 0.90293 1.24790 0.97227 1.01293 0.97232 1.69753 1.15008 1.51235 1.21191 0.85958 0.79455 0.78394 0.81443 1.20494 1.21659 1.21653 1.21572 0.89434 0.96510 0.92613 1.67200 1.09283 1.27466 1.25538 0.91716 0.87692 0.91664 0.79412 0.91295 0.90687 0.86716 0.96315 0.93630 0.95176 0.94877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.36 101.05 1.05 1.40 16 2 O -0.28 -3.70 10.56 -18.22 -0.19 -3.89 16 3 C 0.53 7.57 8.49 -91.34 -0.78 6.79 16 4 N -0.57 -6.81 9.22 -14.76 -0.14 -6.94 16 5 C 0.19 1.92 11.28 -17.21 -0.19 1.73 16 6 C -0.06 -0.86 7.39 -39.05 -0.29 -1.15 16 7 F -0.12 -1.56 17.19 2.25 0.04 -1.52 16 8 C 0.39 6.32 7.53 -16.67 -0.13 6.19 16 9 O -0.27 -4.94 9.77 -18.38 -0.18 -5.12 16 10 C 0.07 1.37 3.16 -24.89 -0.08 1.29 16 11 H 0.10 1.89 7.16 -51.93 -0.37 1.52 16 12 C -0.14 -2.71 6.81 -24.58 -0.17 -2.88 16 13 C 0.15 3.77 5.89 -2.53 -0.01 3.76 16 14 N -0.60 -15.88 3.39 -170.07 -0.58 -16.46 16 15 C -0.22 -6.32 10.27 -15.06 -0.15 -6.47 16 16 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 18 N -0.92 -26.87 10.09 55.49 0.56 -26.31 16 19 Si 0.92 22.20 29.55 -169.99 -5.02 17.18 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.13 2.83 7.02 -3.06 -0.02 2.81 16 24 N -0.55 -9.11 8.89 -14.75 -0.13 -9.24 16 25 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.19 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.12 3.11 5.87 -51.93 -0.31 2.81 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.03 0.69 8.06 -51.93 -0.42 0.28 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -31.81 305.84 -5.92 -37.72 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -4.02 Total: -3.13 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -0.87 Total: 13.10 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.28 Total: -58.95 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.37 Total: -9.00 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.81 -5.92 -37.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228465708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.402 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds