Wall clock time and date at job start Tue Mar 31 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35508 * 116.99671 * 2 1 4 4 N 1.32253 * 119.14077 * 359.97438 * 3 2 1 5 5 C 1.32515 * 120.91786 * 179.97438 * 4 3 2 6 6 C 1.38357 * 119.21415 * 0.28288 * 5 4 3 7 7 F 1.35105 * 120.78204 * 179.72305 * 6 5 4 8 8 C 1.39545 * 118.43430 * 359.47423 * 6 5 4 9 9 O 1.35563 * 120.49023 * 180.22403 * 8 6 5 10 10 C 1.42895 * 117.00222 * 180.30624 * 9 8 6 11 11 H 1.08998 * 110.64353 * 31.68203 * 10 9 8 12 12 C 1.55157 * 110.72387 * 155.02133 * 10 9 8 13 13 C 1.54909 * 101.58417 * 153.85942 * 12 10 9 14 14 N 1.47423 * 104.83465 * 322.99751 * 13 12 10 15 15 C 1.36937 * 125.64730 * 204.09332 * 14 13 12 16 16 H 1.08001 * 119.99513 * 180.02562 * 15 14 13 17 17 C 1.38808 * 119.99910 * 0.03762 * 15 14 13 18 18 N 1.31615 * 120.00435 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99849 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47179 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47188 * 119.99674 * 19 17 15 22 22 H 1.48500 * 109.47331 * 239.99732 * 19 17 15 23 23 C 1.47020 * 108.70308 * 24.12082 * 14 13 12 24 24 N 1.32281 * 119.13841 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.46666 * 60.00178 * 1 2 3 26 26 H 1.09001 * 109.46905 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47006 * 300.00303 * 1 2 3 28 28 H 1.08002 * 120.38922 * 179.97438 * 5 4 3 29 29 H 1.08992 * 111.00550 * 271.93758 * 12 10 9 30 30 H 1.09003 * 110.99983 * 35.79260 * 12 10 9 31 31 H 1.09000 * 110.37037 * 204.15061 * 13 12 10 32 32 H 1.09003 * 110.45425 * 81.87800 * 13 12 10 33 33 H 0.96999 * 120.00409 * 179.97438 * 18 17 15 34 34 H 1.09003 * 109.88679 * 239.52877 * 23 14 13 35 35 H 1.09006 * 110.01107 * 118.43643 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 7 1.3073 2.3056 -0.0005 5 6 1.8719 3.5045 0.0000 6 6 3.2521 3.6008 -0.0049 7 9 3.8610 4.8069 -0.0102 8 6 4.0005 2.4230 0.0010 9 8 5.3553 2.4689 0.0011 10 6 6.0468 1.2184 0.0006 11 1 5.4732 0.4623 -0.5354 12 6 7.4637 1.3748 -0.6120 13 6 8.2290 0.2159 0.0743 14 7 7.6893 0.1670 1.4453 15 6 8.3349 -0.3446 2.5393 16 1 7.8516 -0.3344 3.5051 17 6 9.6103 -0.8762 2.4068 18 7 10.1990 -0.8890 1.2298 19 14 10.4906 -1.5747 3.8990 20 1 9.6195 -1.4425 5.0945 21 1 10.7978 -3.0089 3.6661 22 1 11.7544 -0.8278 4.1229 23 6 6.3431 0.7578 1.4434 24 7 3.3661 1.2569 -0.0005 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.2619 4.3957 -0.0009 29 1 7.4388 1.2403 -1.6933 30 1 7.8984 2.3394 -0.3497 31 1 9.2982 0.4269 0.0947 32 1 8.0385 -0.7249 -0.4421 33 1 11.0904 -1.2601 1.1373 34 1 6.3123 1.6126 2.1191 35 1 5.6089 0.0140 1.7533 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228465708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:01 Heat of formation + Delta-G solvation = -47.112936 kcal Electronic energy + Delta-G solvation = -22147.565133 eV Core-core repulsion = 18483.135643 eV Total energy + Delta-G solvation = -3664.429490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.96272 -42.55872 -40.71932 -39.23947 -38.06119 -34.78502 -34.27738 -31.93772 -31.12116 -29.20683 -28.45786 -26.84707 -25.60139 -24.67774 -22.28571 -22.19295 -20.41812 -19.82981 -18.98335 -18.78098 -18.26251 -17.93509 -16.94606 -16.81095 -16.45836 -16.30236 -15.85065 -15.50876 -15.16571 -14.94180 -14.45594 -14.32078 -14.22449 -13.76347 -13.47797 -13.08266 -12.98930 -12.89751 -12.72441 -12.38861 -12.32634 -12.21879 -12.00265 -11.88971 -11.50331 -11.21088 -10.81116 -10.58097 -9.78731 -8.99459 -7.83401 -5.29521 -0.38732 -0.26614 1.18929 1.46225 1.47527 1.57306 1.61661 2.34375 2.46116 2.68120 2.82908 3.27910 3.32900 3.54631 3.59222 3.68913 3.85499 4.02169 4.07636 4.41168 4.43486 4.48842 4.61649 4.70115 4.75729 4.79211 4.88587 4.97376 5.33247 5.39464 5.50599 5.68100 5.77362 5.95989 6.22796 6.71772 7.03800 7.67604 8.30767 9.19381 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022685 B = 0.004144 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.009797 B = 6754.740792 C = 7390.433461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.304 6.304 3 C 0.523 3.477 4 N -0.559 5.559 5 C 0.212 3.788 6 C -0.068 4.068 7 F -0.117 7.117 8 C 0.365 3.635 9 O -0.283 6.283 10 C 0.091 3.909 11 H 0.100 0.900 12 C -0.122 4.122 13 C 0.156 3.844 14 N -0.622 5.622 15 C -0.247 4.247 16 H 0.078 0.922 17 C -0.060 4.060 18 N -0.946 5.946 19 Si 0.985 3.015 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.287 1.287 23 C 0.127 3.873 24 N -0.584 5.584 25 H 0.074 0.926 26 H 0.129 0.871 27 H 0.071 0.929 28 H 0.241 0.759 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.001 0.999 33 H 0.251 0.749 34 H 0.024 0.976 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.577 8.257 -5.251 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.204 6.204 3 C 0.221 3.779 4 N -0.293 5.293 5 C 0.049 3.951 6 C -0.094 4.094 7 F -0.096 7.096 8 C 0.177 3.823 9 O -0.186 6.186 10 C 0.035 3.965 11 H 0.118 0.882 12 C -0.160 4.160 13 C 0.031 3.969 14 N -0.349 5.349 15 C -0.375 4.375 16 H 0.096 0.904 17 C -0.253 4.253 18 N -0.595 5.595 19 Si 0.813 3.187 20 H -0.194 1.194 21 H -0.215 1.215 22 H -0.213 1.213 23 C 0.001 3.999 24 N -0.327 5.327 25 H 0.093 0.907 26 H 0.147 0.853 27 H 0.090 0.910 28 H 0.257 0.743 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -20.545 7.204 -5.191 22.382 hybrid contribution 1.128 0.162 0.751 1.365 sum -19.418 7.365 -4.440 21.237 Atomic orbital electron populations 1.23393 0.72816 1.05735 1.03713 1.86146 1.26056 1.21996 1.86251 1.20442 0.84230 0.85974 0.87206 1.68312 1.39178 0.97968 1.23803 1.23704 0.88570 0.96744 0.86117 1.18427 0.92714 0.79659 1.18553 1.91543 1.83164 1.40033 1.94845 1.20251 0.85579 0.88339 0.88120 1.86404 1.12787 1.34203 1.85187 1.23448 0.92953 0.83136 0.96956 0.88185 1.23092 0.91563 1.00616 1.00770 1.21798 0.99666 0.92758 0.82645 1.44654 1.13432 1.70808 1.06035 1.19462 0.97774 1.32276 0.88031 0.90384 1.25649 0.97820 1.01685 1.00130 1.69984 1.15044 1.51579 1.22931 0.84923 0.78099 0.77317 0.78398 1.19388 1.21521 1.21349 1.21598 0.87615 0.95766 0.94968 1.67061 1.10830 1.28142 1.26653 0.90721 0.85274 0.91028 0.74271 0.88114 0.90551 0.89496 0.98140 0.93900 0.95801 0.95651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.36 113.37 1.17 1.69 16 2 O -0.30 -7.57 10.56 -88.10 -0.93 -8.50 16 3 C 0.52 14.19 8.49 180.60 1.53 15.72 16 4 N -0.56 -11.68 9.22 -313.56 -2.89 -14.57 16 5 C 0.21 3.63 11.28 84.62 0.95 4.58 16 6 C -0.07 -1.66 7.39 22.61 0.17 -1.49 16 7 F -0.12 -2.92 17.19 44.97 0.77 -2.15 16 8 C 0.37 11.52 7.53 84.87 0.64 12.16 16 9 O -0.28 -10.17 9.77 -88.70 -0.87 -11.04 16 10 C 0.09 3.58 3.16 31.78 0.10 3.68 16 11 H 0.10 3.87 7.16 -2.39 -0.02 3.86 16 12 C -0.12 -4.80 6.81 31.99 0.22 -4.58 16 13 C 0.16 7.88 5.89 86.86 0.51 8.39 16 14 N -0.62 -33.85 3.39 -691.98 -2.35 -36.20 16 15 C -0.25 -14.38 10.27 84.03 0.86 -13.51 16 16 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 17 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 18 N -0.95 -56.38 10.09 21.65 0.22 -56.16 16 19 Si 0.99 46.12 29.55 68.60 2.03 48.15 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 C 0.13 5.87 7.02 86.73 0.61 6.48 16 24 N -0.58 -19.00 8.89 -426.19 -3.79 -22.79 16 25 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 26 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 28 H 0.24 1.52 8.06 -2.91 -0.02 1.49 16 29 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.09 4.89 5.87 -2.39 -0.01 4.88 16 32 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.25 14.38 8.31 -92.71 -0.77 13.60 16 34 H 0.02 1.13 8.06 -2.39 -0.02 1.11 16 35 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -70.57 305.84 0.54 -70.02 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.12 Total: 3.11 kcal Atomic # 6 Polarization: 22.90 SS G_CDS: 7.23 Total: 30.14 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -8.81 Total: -129.73 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -1.80 Total: -19.54 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.77 Total: -2.15 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -70.57 0.54 -70.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228465708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.910 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds