Wall clock time and date at job start Tue Mar 31 2020 06:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.46735 * 2 1 4 4 C 1.42902 * 113.99790 * 179.97438 * 3 2 1 5 5 C 1.53784 * 113.61764 * 150.00184 * 4 3 2 6 6 C 1.53776 * 87.07945 * 89.19826 * 5 4 3 7 7 S 1.81001 * 113.61209 * 139.98578 * 6 5 4 8 8 C 1.76202 * 100.00081 * 174.99633 * 7 6 5 9 9 N 1.32378 * 126.25855 * 359.97438 * 8 7 6 10 10 N 1.28517 * 110.20552 * 179.97438 * 9 8 7 11 11 C 1.33101 * 109.74356 * 359.97438 * 10 9 8 12 12 C 1.39770 * 126.56315 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00267 * 186.17301 * 12 11 10 14 14 C 1.40082 * 120.00148 * 6.17449 * 12 11 10 15 15 N 1.30815 * 120.00011 * 183.81472 * 14 12 11 16 16 Si 1.86797 * 119.99964 * 3.53609 * 14 12 11 17 17 H 1.48504 * 109.47363 * 180.27842 * 16 14 12 18 18 H 1.48508 * 109.47243 * 300.27665 * 16 14 12 19 19 H 1.48498 * 109.47153 * 60.27640 * 16 14 12 20 20 N 1.36670 * 126.25718 * 180.24307 * 8 7 6 21 21 C 1.46505 * 127.15499 * 0.02562 * 20 8 7 22 22 C 1.53780 * 87.08278 * 25.43567 * 6 5 4 23 23 H 1.08996 * 109.46921 * 300.00070 * 1 2 3 24 24 H 1.09000 * 109.46809 * 60.00279 * 1 2 3 25 25 H 1.09000 * 109.46978 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47346 * 240.00259 * 2 1 3 27 27 H 1.08999 * 109.47252 * 119.99426 * 2 1 3 28 28 H 1.09004 * 112.85247 * 18.80180 * 4 3 2 29 29 H 1.08997 * 113.61110 * 334.65119 * 5 4 3 30 30 H 1.08997 * 113.69229 * 203.76256 * 5 4 3 31 31 H 1.09008 * 113.61545 * 270.79848 * 6 5 4 32 32 H 0.97000 * 119.99933 * 354.52729 * 15 14 12 33 33 H 1.08998 * 109.47214 * 270.16073 * 21 20 8 34 34 H 1.09005 * 109.46816 * 30.15889 * 21 20 8 35 35 H 1.09000 * 109.46741 * 150.15400 * 21 20 8 36 36 H 1.08993 * 113.61384 * 89.11361 * 22 6 5 37 37 H 1.09004 * 113.60872 * 220.01615 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.9489 2.7252 -0.7039 6 6 3.8411 3.4322 0.6575 7 16 5.2167 4.5574 1.0010 8 6 4.6662 5.2585 2.5209 9 7 3.5388 4.9715 3.1526 10 7 3.4471 5.6619 4.2328 11 6 4.5192 6.4401 4.3614 12 6 4.7800 7.3324 5.4051 13 1 5.6377 7.9869 5.3546 14 6 3.9290 7.3779 6.5169 15 7 4.1297 8.2636 7.4584 16 14 2.5029 6.1789 6.6511 17 1 1.7558 6.4369 7.9083 18 1 1.5945 6.3581 5.4899 19 1 3.0244 4.7886 6.6616 20 7 5.3226 6.2019 3.2605 21 6 6.6111 6.8279 2.9535 22 6 4.0038 2.0456 1.3021 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.9281 0.5457 -0.3228 29 1 3.2640 3.1180 -1.4553 30 1 4.9718 2.6352 -1.0694 31 1 2.8670 3.8873 0.8373 32 1 4.9123 8.8358 7.4272 33 1 7.4155 6.2382 3.3930 34 1 6.7438 6.8749 1.8726 35 1 6.6325 7.8365 3.3663 36 1 5.0418 1.7685 1.4857 37 1 3.3631 1.8898 2.1701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473026704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:51 Heat of formation + Delta-G solvation = 28.894752 kcal Electronic energy + Delta-G solvation = -19800.780247 eV Core-core repulsion = 16705.859873 eV Total energy + Delta-G solvation = -3094.920374 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89194 -39.41676 -36.14148 -33.90500 -33.54447 -31.01478 -29.98456 -26.76111 -25.83307 -25.53918 -24.72656 -22.97702 -21.40645 -20.35681 -19.56580 -18.17302 -17.23830 -16.38533 -15.74044 -15.61380 -15.16298 -15.01448 -14.72455 -13.81159 -13.52932 -13.29705 -13.15669 -12.88618 -12.61835 -12.59125 -12.49162 -12.01099 -11.84974 -11.65141 -11.38653 -11.05950 -10.85659 -10.71793 -10.43554 -10.09649 -9.81597 -9.53932 -9.51048 -9.36821 -9.03996 -8.65558 -8.36498 -7.41252 -7.06267 -4.82091 1.96096 2.66112 2.94303 3.45211 3.58791 3.62959 3.89864 4.06599 4.17935 4.43082 4.48548 4.53174 4.75635 4.93514 4.96490 5.12558 5.13660 5.20794 5.26460 5.39298 5.56458 5.64884 5.73570 5.75255 5.76765 5.91215 5.96624 6.03728 6.16917 6.30098 6.42186 6.67645 7.14637 7.18387 7.41540 7.56673 8.06530 8.37288 8.57602 9.98195 10.15298 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.004739 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.686579 B = 5907.100186 C = 7141.568387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.364 6.364 4 C 0.069 3.931 5 C -0.115 4.115 6 C -0.074 4.074 7 S -0.051 6.051 8 C 0.071 3.929 9 N -0.265 5.265 10 N -0.417 5.417 11 C 0.344 3.656 12 C -0.493 4.493 13 H 0.083 0.917 14 C 0.065 3.935 15 N -0.809 5.809 16 Si 1.112 2.888 17 H -0.312 1.312 18 H -0.261 1.261 19 H -0.281 1.281 20 N -0.514 5.514 21 C 0.102 3.898 22 C -0.139 4.139 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.122 0.878 32 H 0.283 0.717 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -12.356 -14.531 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.283 6.283 4 C 0.009 3.991 5 C -0.154 4.154 6 C -0.204 4.204 7 S 0.179 5.821 8 C -0.303 4.303 9 N -0.108 5.108 10 N -0.266 5.266 11 C 0.101 3.899 12 C -0.534 4.534 13 H 0.101 0.899 14 C -0.157 4.157 15 N -0.433 5.433 16 Si 0.941 3.059 17 H -0.242 1.242 18 H -0.186 1.186 19 H -0.207 1.207 20 N -0.215 5.215 21 C -0.042 4.042 22 C -0.179 4.179 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.114 0.886 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.140 -12.921 -13.933 19.003 hybrid contribution 2.027 1.003 -0.387 2.295 sum 1.887 -11.918 -14.320 18.726 Atomic orbital electron populations 1.21750 0.93753 1.02096 1.03380 1.22517 0.95622 0.83853 0.99912 1.87934 1.19575 1.26214 1.94536 1.22944 0.81781 0.97245 0.97105 1.23084 1.01898 0.94762 0.95656 1.24593 1.00823 0.95880 0.99059 1.84387 1.29245 1.49840 1.18639 1.25405 0.98416 1.03702 1.02773 1.74278 1.13656 1.19886 1.02993 1.73985 1.21112 1.16580 1.14964 1.21719 0.86110 0.95152 0.86934 1.19388 1.13938 1.18524 1.01556 0.89942 1.27339 1.01490 0.96865 0.90041 1.70678 1.26048 1.14153 1.32434 0.82695 0.74596 0.74367 0.74219 1.24178 1.18640 1.20717 1.45865 1.19301 1.35375 1.20963 1.21528 0.83249 0.98552 1.00902 1.23700 1.02060 0.93977 0.98211 0.91554 0.91906 0.91232 0.93523 0.93269 0.90494 0.89646 0.88430 0.86012 0.90593 0.92221 0.91190 0.90321 0.88578 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.56 6.50 37.16 0.24 0.80 16 3 O -0.36 -4.71 10.28 -35.23 -0.36 -5.07 16 4 C 0.07 0.80 4.37 -25.92 -0.11 0.68 16 5 C -0.11 -1.32 7.50 -25.92 -0.19 -1.51 16 6 C -0.07 -1.15 3.58 -25.92 -0.09 -1.24 16 7 S -0.05 -0.88 21.58 -107.50 -2.32 -3.20 16 8 C 0.07 1.65 8.09 -87.29 -0.71 0.94 16 9 N -0.27 -6.97 11.46 30.89 0.35 -6.62 16 10 N -0.42 -11.86 7.51 31.26 0.23 -11.62 16 11 C 0.34 9.40 7.27 -154.81 -1.13 8.27 16 12 C -0.49 -13.51 9.50 -38.32 -0.36 -13.88 16 13 H 0.08 2.19 7.47 -52.48 -0.39 1.79 16 14 C 0.07 1.79 5.52 -17.29 -0.10 1.70 16 15 N -0.81 -22.07 13.65 55.56 0.76 -21.32 16 16 Si 1.11 28.68 25.88 -169.99 -4.40 24.28 16 17 H -0.31 -7.69 7.11 56.52 0.40 -7.29 16 18 H -0.26 -6.96 6.77 56.52 0.38 -6.58 16 19 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 20 N -0.51 -12.19 3.26 -123.18 -0.40 -12.59 16 21 C 0.10 1.85 10.89 59.85 0.65 2.51 16 22 C -0.14 -1.96 7.50 -25.92 -0.19 -2.15 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.10 0.95 8.10 -51.93 -0.42 0.52 16 31 H 0.12 2.24 7.93 -51.92 -0.41 1.82 16 32 H 0.28 7.32 8.73 -40.82 -0.36 6.96 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 35 H 0.08 1.38 7.48 -51.93 -0.39 0.99 16 36 H 0.10 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 324.24 15.07 4.89 4.89 Total: -1.00 -32.38 324.24 -8.26 -40.65 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -5.40 Total: -4.55 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.61 Total: -4.84 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.95 Total: -52.15 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.36 Total: -5.07 kcal Atomic # 14 Polarization: 28.68 SS G_CDS: -4.40 Total: 24.28 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.32 Total: -3.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.38 -8.26 -40.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473026704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.540 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds