Wall clock time and date at job start Tue Mar 31 2020 06:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42901 * 109.46735 * 2 1 4 4 C 1.42902 * 113.99790 * 179.97438 * 3 2 1 5 5 C 1.53784 * 113.61764 * 150.00184 * 4 3 2 6 6 C 1.53776 * 87.07945 * 89.19826 * 5 4 3 7 7 S 1.81001 * 113.61209 * 139.98578 * 6 5 4 8 8 C 1.76202 * 100.00081 * 174.99633 * 7 6 5 9 9 N 1.32378 * 126.25855 * 359.97438 * 8 7 6 10 10 N 1.28517 * 110.20552 * 179.97438 * 9 8 7 11 11 C 1.33101 * 109.74356 * 359.97438 * 10 9 8 12 12 C 1.39770 * 126.56315 * 179.97438 * 11 10 9 13 13 H 1.08006 * 120.00267 * 186.17301 * 12 11 10 14 14 C 1.40082 * 120.00148 * 6.17449 * 12 11 10 15 15 N 1.30815 * 120.00011 * 183.81472 * 14 12 11 16 16 Si 1.86797 * 119.99964 * 3.53609 * 14 12 11 17 17 H 1.48504 * 109.47363 * 180.27842 * 16 14 12 18 18 H 1.48508 * 109.47243 * 300.27665 * 16 14 12 19 19 H 1.48498 * 109.47153 * 60.27640 * 16 14 12 20 20 N 1.36670 * 126.25718 * 180.24307 * 8 7 6 21 21 C 1.46505 * 127.15499 * 0.02562 * 20 8 7 22 22 C 1.53780 * 87.08278 * 25.43567 * 6 5 4 23 23 H 1.08996 * 109.46921 * 300.00070 * 1 2 3 24 24 H 1.09000 * 109.46809 * 60.00279 * 1 2 3 25 25 H 1.09000 * 109.46978 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47346 * 240.00259 * 2 1 3 27 27 H 1.08999 * 109.47252 * 119.99426 * 2 1 3 28 28 H 1.09004 * 112.85247 * 18.80180 * 4 3 2 29 29 H 1.08997 * 113.61110 * 334.65119 * 5 4 3 30 30 H 1.08997 * 113.69229 * 203.76256 * 5 4 3 31 31 H 1.09008 * 113.61545 * 270.79848 * 6 5 4 32 32 H 0.97000 * 119.99933 * 354.52729 * 15 14 12 33 33 H 1.08998 * 109.47214 * 270.16073 * 21 20 8 34 34 H 1.09005 * 109.46816 * 30.15889 * 21 20 8 35 35 H 1.09000 * 109.46741 * 150.15400 * 21 20 8 36 36 H 1.08993 * 113.61384 * 89.11361 * 22 6 5 37 37 H 1.09004 * 113.60872 * 220.01615 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.9489 2.7252 -0.7039 6 6 3.8411 3.4322 0.6575 7 16 5.2167 4.5574 1.0010 8 6 4.6662 5.2585 2.5209 9 7 3.5388 4.9715 3.1526 10 7 3.4471 5.6619 4.2328 11 6 4.5192 6.4401 4.3614 12 6 4.7800 7.3324 5.4051 13 1 5.6377 7.9869 5.3546 14 6 3.9290 7.3779 6.5169 15 7 4.1297 8.2636 7.4584 16 14 2.5029 6.1789 6.6511 17 1 1.7558 6.4369 7.9083 18 1 1.5945 6.3581 5.4899 19 1 3.0244 4.7886 6.6616 20 7 5.3226 6.2019 3.2605 21 6 6.6111 6.8279 2.9535 22 6 4.0038 2.0456 1.3021 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.9281 0.5457 -0.3228 29 1 3.2640 3.1180 -1.4553 30 1 4.9718 2.6352 -1.0694 31 1 2.8670 3.8873 0.8373 32 1 4.9123 8.8358 7.4272 33 1 7.4155 6.2382 3.3930 34 1 6.7438 6.8749 1.8726 35 1 6.6325 7.8365 3.3663 36 1 5.0418 1.7685 1.4857 37 1 3.3631 1.8898 2.1701 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473026704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:50 Heat of formation + Delta-G solvation = 9.160180 kcal Electronic energy + Delta-G solvation = -19801.636002 eV Core-core repulsion = 16705.859873 eV Total energy + Delta-G solvation = -3095.776129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.84279 -40.38738 -37.08329 -35.94693 -35.39434 -32.00837 -31.76778 -28.46938 -27.39780 -26.73315 -26.01383 -23.71780 -23.33356 -22.19273 -20.71019 -20.20392 -18.50247 -17.72452 -17.03227 -16.88279 -16.54358 -16.43480 -16.08794 -15.77121 -15.27583 -14.76036 -14.39825 -14.23378 -14.09875 -13.70020 -13.53594 -13.41958 -13.12762 -12.95345 -12.82535 -12.53160 -12.28622 -11.93581 -11.70209 -11.59681 -11.47317 -11.44937 -11.24198 -10.87264 -10.58113 -10.43253 -10.34718 -9.50971 -8.67226 -6.87318 0.39101 0.97836 1.21317 1.51162 1.58620 1.91016 2.11711 2.20894 2.40411 2.63371 3.02590 3.43003 3.53757 3.71632 3.92185 4.10508 4.21906 4.27610 4.32258 4.40818 4.47491 4.52774 4.55335 4.68739 4.69192 4.78864 4.85223 5.00129 5.02846 5.06962 5.17934 5.22412 5.29043 5.35547 5.69431 5.99244 6.36357 6.37796 6.56204 7.91034 8.16287 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.004739 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.686579 B = 5907.100186 C = 7141.568387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.050 3.950 3 O -0.393 6.393 4 C 0.079 3.921 5 C -0.096 4.096 6 C -0.093 4.093 7 S 0.005 5.995 8 C 0.083 3.917 9 N -0.309 5.309 10 N -0.451 5.451 11 C 0.324 3.676 12 C -0.510 4.510 13 H 0.085 0.915 14 C 0.044 3.956 15 N -0.823 5.823 16 Si 1.145 2.855 17 H -0.295 1.295 18 H -0.282 1.282 19 H -0.296 1.296 20 N -0.517 5.517 21 C 0.093 3.907 22 C -0.143 4.143 23 H 0.045 0.955 24 H 0.061 0.939 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.287 0.713 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.047 -13.957 -17.148 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.026 4.026 3 O -0.313 6.313 4 C 0.020 3.980 5 C -0.135 4.135 6 C -0.223 4.223 7 S 0.234 5.766 8 C -0.292 4.292 9 N -0.151 5.151 10 N -0.299 5.299 11 C 0.076 3.924 12 C -0.551 4.551 13 H 0.103 0.897 14 C -0.176 4.176 15 N -0.448 5.448 16 Si 0.975 3.025 17 H -0.224 1.224 18 H -0.209 1.209 19 H -0.224 1.224 20 N -0.217 5.217 21 C -0.049 4.049 22 C -0.183 4.183 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.355 -14.509 -16.538 22.042 hybrid contribution 1.620 1.383 0.198 2.139 sum 2.976 -13.126 -16.340 21.169 Atomic orbital electron populations 1.21786 0.93536 1.03346 1.02321 1.22743 0.95947 0.82698 1.01190 1.87916 1.20511 1.28336 1.94530 1.22948 0.81484 0.98723 0.94891 1.23121 1.03752 0.93360 0.93270 1.24841 0.98624 0.96014 1.02822 1.84152 1.29209 1.49230 1.13959 1.26638 0.96967 1.01618 1.03984 1.74221 1.15853 1.21529 1.03517 1.73853 1.22306 1.17446 1.16299 1.21812 0.86824 0.95528 0.88213 1.19404 1.14385 1.19326 1.01985 0.89730 1.27685 1.02265 0.97323 0.90322 1.70664 1.26666 1.14783 1.32736 0.82202 0.73573 0.72926 0.73844 1.22419 1.20858 1.22356 1.46244 1.20473 1.35084 1.19855 1.21909 0.81183 0.98749 1.03082 1.23752 1.02587 0.93503 0.98427 0.93534 0.92020 0.88851 0.90984 0.93072 0.86754 0.88975 0.85520 0.89442 0.90201 0.90252 0.88231 0.89942 0.87034 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 10.28 71.98 0.74 -1.76 16 2 C 0.05 0.87 6.50 71.98 0.47 1.34 16 3 O -0.39 -9.58 10.28 -148.98 -1.53 -11.11 16 4 C 0.08 1.59 4.37 31.12 0.14 1.73 16 5 C -0.10 -1.86 7.50 31.12 0.23 -1.62 16 6 C -0.09 -2.76 3.58 31.12 0.11 -2.65 16 7 S 0.01 0.16 21.58 -56.49 -1.22 -1.06 16 8 C 0.08 3.80 8.09 179.18 1.45 5.25 16 9 N -0.31 -16.61 11.46 -56.18 -0.64 -17.25 16 10 N -0.45 -26.34 7.51 -55.02 -0.41 -26.75 16 11 C 0.32 17.90 7.27 133.23 0.97 18.87 16 12 C -0.51 -28.36 9.50 23.09 0.22 -28.14 16 13 H 0.08 4.53 7.47 -2.91 -0.02 4.50 16 14 C 0.04 2.47 5.52 85.29 0.47 2.94 16 15 N -0.82 -45.26 13.65 21.86 0.30 -44.96 16 16 Si 1.15 60.20 25.88 68.60 1.78 61.97 16 17 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 18 H -0.28 -15.61 6.77 99.48 0.67 -14.93 16 19 H -0.30 -16.09 7.11 99.48 0.71 -15.38 16 20 N -0.52 -24.12 3.26 -543.62 -1.77 -25.89 16 21 C 0.09 3.16 10.89 127.77 1.39 4.55 16 22 C -0.14 -3.80 7.50 31.12 0.23 -3.57 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.11 1.50 7.87 -2.38 -0.02 1.48 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.13 1.77 8.10 -2.39 -0.02 1.75 16 31 H 0.09 3.25 7.93 -2.38 -0.02 3.24 16 32 H 0.29 14.96 8.73 -92.71 -0.81 14.15 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.10 2.78 7.85 -2.38 -0.02 2.76 16 35 H 0.08 2.76 7.48 -2.39 -0.02 2.74 16 36 H 0.11 2.59 8.10 -2.39 -0.02 2.57 16 37 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -72.41 324.24 3.91 -68.50 By element: Atomic # 1 Polarization: -1.38 SS G_CDS: 0.99 Total: -0.40 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 6.42 Total: -3.06 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -2.53 Total: -114.86 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -1.53 Total: -11.11 kcal Atomic # 14 Polarization: 60.20 SS G_CDS: 1.78 Total: 61.97 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.22 Total: -1.06 kcal Total: -72.41 3.91 -68.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473026704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.662 kcal (2) G-P(sol) polarization free energy of solvation -72.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds