Wall clock time and date at job start Tue Mar 31 2020 05:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47441 * 2 1 4 4 C 1.53003 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46499 * 109.46708 * 64.99829 * 4 2 1 6 6 C 1.36935 * 119.99926 * 180.02562 * 5 4 2 7 7 H 1.08005 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00369 * 179.73019 * 6 5 4 9 9 N 1.31617 * 119.99773 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00451 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47045 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47426 * 119.99572 * 10 8 6 13 13 H 1.48501 * 109.46833 * 239.99815 * 10 8 6 14 14 C 1.52999 * 109.47313 * 119.99784 * 2 1 3 15 15 N 1.46498 * 109.47281 * 295.00596 * 14 2 1 16 16 C 1.34775 * 120.00533 * 179.97438 * 15 14 2 17 17 O 1.21285 * 119.99576 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00168 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.46965 * 180.02562 * 18 16 15 20 20 C 1.33644 * 126.03970 * 89.71628 * 19 18 16 21 21 N 1.31785 * 114.49714 * 179.78828 * 20 19 18 22 22 C 1.29028 * 117.12816 * 0.52210 * 21 20 19 23 23 S 1.70979 * 110.16540 * 359.71189 * 22 21 20 24 24 H 1.09000 * 109.47110 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47196 * 300.00119 * 1 2 3 26 26 H 1.09006 * 109.47245 * 60.00003 * 1 2 3 27 27 H 1.08998 * 109.46692 * 305.00331 * 4 2 1 28 28 H 1.08994 * 109.47584 * 185.00195 * 4 2 1 29 29 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 30 30 H 0.97004 * 120.00382 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.46775 * 54.99966 * 14 2 1 32 32 H 1.08998 * 109.47583 * 174.99732 * 14 2 1 33 33 H 0.97002 * 120.00105 * 359.97438 * 15 14 2 34 34 H 1.09000 * 109.47269 * 299.99802 * 18 16 15 35 35 H 1.08994 * 109.47309 * 60.00191 * 18 16 15 36 36 H 1.08001 * 122.74677 * 359.97438 * 20 19 18 37 37 H 1.07997 * 124.91300 * 179.68303 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 2.0011 -0.4208 -3.6855 7 1 2.5623 -1.3382 -3.7864 8 6 1.6291 0.2931 -4.8163 9 7 0.9407 1.4081 -4.6937 10 14 2.1041 -0.3295 -6.5123 11 1 2.8694 -1.5951 -6.3785 12 1 0.8768 -0.5749 -7.3112 13 1 2.9444 0.6868 -7.1952 14 6 2.0400 -0.7212 1.2492 15 7 1.6523 0.0353 2.4424 16 6 1.9954 -0.4135 3.6660 17 8 2.6248 -1.4441 3.7794 18 6 1.5971 0.3651 4.8932 19 6 2.0994 -0.3453 6.1237 20 6 3.2871 -0.1614 6.7081 21 7 3.4899 -0.9022 7.7790 22 6 2.5435 -1.7083 8.1245 23 16 1.2274 -1.5708 7.0417 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.6054 -1.7198 -1.2951 28 1 3.1263 -0.7995 -1.2055 29 1 1.1488 0.8594 -2.3517 30 1 0.6804 1.9069 -5.4839 31 1 1.6053 -1.7197 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 1.1487 0.8594 2.3518 34 1 2.0324 1.3633 4.8474 35 1 0.5109 0.4440 4.9368 36 1 4.0195 0.5393 6.3351 37 1 2.5780 -2.3739 8.9743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753620046.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:54 Heat of formation + Delta-G solvation = 9.785625 kcal Electronic energy + Delta-G solvation = -18956.398738 eV Core-core repulsion = 15860.649731 eV Total energy + Delta-G solvation = -3095.749008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.22311 -39.42018 -36.89907 -34.41248 -33.19129 -32.39927 -30.10051 -28.27447 -26.47829 -25.46842 -24.47400 -22.48020 -20.87922 -20.36922 -19.84195 -18.37262 -17.47110 -16.83930 -16.33167 -15.93539 -15.25052 -14.77077 -14.55699 -14.43891 -14.17006 -13.74591 -13.63877 -13.30350 -13.10572 -12.87628 -12.53065 -12.27168 -12.07184 -11.50546 -11.09304 -10.94676 -10.74430 -10.60473 -10.46465 -10.16009 -9.99265 -9.92331 -9.71453 -9.49239 -9.17766 -9.10519 -8.90406 -6.94674 -5.79420 -3.07808 0.41810 1.08628 1.47258 2.48642 2.56169 3.14509 3.42126 3.48243 3.50216 4.04805 4.34420 4.57295 4.67048 4.70870 4.97176 5.02243 5.06616 5.17783 5.34220 5.40445 5.55677 5.76917 5.86303 5.92197 5.94956 6.07038 6.19938 6.34819 6.41966 6.61691 6.74002 6.83256 7.37814 7.43073 7.69107 8.08906 8.39750 9.51170 10.08121 10.42881 11.43646 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.056483 B = 0.002392 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.601367 B =11703.937726 C =11820.464860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.127 3.873 15 N -0.723 5.723 16 C 0.510 3.490 17 O -0.532 6.532 18 C -0.066 4.066 19 C -0.198 4.198 20 C 0.043 3.957 21 N -0.471 5.471 22 C 0.014 3.986 23 S 0.134 5.866 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.384 0.616 30 H 0.254 0.746 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.401 0.599 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.174 0.826 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 -1.271 25.288 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.376 5.376 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.375 5.375 16 C 0.294 3.706 17 O -0.408 6.408 18 C -0.108 4.108 19 C -0.320 4.320 20 C -0.108 4.108 21 N -0.184 5.184 22 C -0.283 4.283 23 S 0.386 5.614 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.218 0.782 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.236 0.764 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.191 0.809 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.021 -2.639 25.522 25.738 hybrid contribution 0.483 0.923 -1.342 1.699 sum -1.538 -1.716 24.180 24.290 Atomic orbital electron populations 1.21791 0.94641 1.01944 1.01497 1.21556 0.96722 1.00507 0.94172 0.90494 1.20574 0.96624 0.94211 0.85379 1.42345 1.66960 1.27651 1.00600 1.19284 1.28488 1.05516 0.83622 0.91101 1.24740 1.00980 0.97480 0.97888 1.69663 1.43377 1.16906 1.28382 0.86105 0.77593 0.77856 0.84587 1.20535 1.21865 1.21866 1.21431 1.00185 0.95259 0.82814 1.46043 1.57720 1.27965 1.05821 1.20389 0.79909 0.85927 0.84373 1.90746 1.39334 1.24189 1.86571 1.20061 1.03257 0.99355 0.88124 1.25301 0.99388 1.04153 1.03113 1.21699 0.95813 1.00811 0.92458 1.66305 1.29895 1.06807 1.15357 1.28349 0.93069 1.02504 1.04401 1.83989 1.21308 1.35146 1.20937 0.92829 0.93914 0.91117 0.96006 0.96128 0.78213 0.93572 0.91330 0.91315 0.76410 0.86546 0.87444 0.80889 0.78512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.15 0.33 -1.65 16 2 C -0.11 -1.62 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.10 16 5 N -0.73 -18.08 5.33 -59.91 -0.32 -18.39 16 6 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 10 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 15 N -0.72 -7.51 5.28 -60.30 -0.32 -7.82 16 16 C 0.51 5.75 7.82 -10.99 -0.09 5.67 16 17 O -0.53 -8.40 16.03 5.55 0.09 -8.31 16 18 C -0.07 -0.49 6.24 -29.04 -0.18 -0.67 16 19 C -0.20 -1.87 5.09 -35.92 -0.18 -2.06 16 20 C 0.04 0.45 11.25 -19.18 -0.22 0.24 16 21 N -0.47 -5.27 10.54 -15.75 -0.17 -5.43 16 22 C 0.01 0.12 12.23 51.58 0.63 0.75 16 23 S 0.13 1.13 23.22 -107.50 -2.50 -1.37 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 26 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.38 9.84 6.85 -40.82 -0.28 9.56 16 30 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.40 3.11 7.66 -40.82 -0.31 2.79 16 34 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -34.52 330.84 -7.85 -42.37 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.11 Total: 5.98 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.22 Total: -2.13 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.08 Total: -58.85 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.50 Total: -1.37 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.52 -7.85 -42.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620046.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.158 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds