Wall clock time and date at job start Tue Mar 31 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.46906 * 2 1 4 4 C 1.53001 * 109.47067 * 119.99471 * 2 1 3 5 5 N 1.46507 * 109.47141 * 295.00092 * 4 2 1 6 6 C 1.36932 * 120.00060 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00095 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00309 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99752 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00472 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46757 * 60.00246 * 10 8 6 12 12 H 1.48497 * 109.47229 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47146 * 300.00525 * 10 8 6 14 14 C 1.52999 * 109.47225 * 239.99595 * 2 1 3 15 15 N 1.46497 * 109.46992 * 64.99918 * 14 2 1 16 16 C 1.34777 * 119.99525 * 179.97438 * 15 14 2 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 14 19 19 C 1.50703 * 109.47148 * 180.28037 * 18 16 15 20 20 C 1.33633 * 126.04043 * 89.99780 * 19 18 16 21 21 N 1.31782 * 114.50271 * 179.97438 * 20 19 18 22 22 C 1.29027 * 117.12355 * 0.02562 * 21 20 19 23 23 S 1.70978 * 110.16563 * 359.72471 * 22 21 20 24 24 H 1.08998 * 109.47345 * 60.00294 * 1 2 3 25 25 H 1.09002 * 109.47301 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47633 * 300.00467 * 1 2 3 27 27 H 1.08996 * 109.47431 * 54.99985 * 4 2 1 28 28 H 1.09001 * 109.47356 * 175.00798 * 4 2 1 29 29 H 0.97003 * 120.00137 * 359.97438 * 5 4 2 30 30 H 0.96998 * 120.00372 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.46838 * 304.99806 * 14 2 1 32 32 H 1.09001 * 109.46617 * 185.00141 * 14 2 1 33 33 H 0.97000 * 120.00580 * 0.02562 * 15 14 2 34 34 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 35 35 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 36 36 H 1.08004 * 122.75084 * 0.02562 * 20 19 18 37 37 H 1.08003 * 124.91835 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6523 0.0356 2.4424 6 6 2.0009 -0.4204 3.6856 7 1 2.5619 -1.3377 3.7866 8 6 1.6341 0.2968 4.8161 9 7 0.9508 1.4150 4.6930 10 14 2.1090 -0.3256 6.5121 11 1 3.5881 -0.4171 6.6095 12 1 1.6016 0.6138 7.5442 13 1 1.5146 -1.6687 6.7309 14 6 2.0399 -0.7213 -1.2492 15 7 1.6524 0.0352 -2.4423 16 6 1.9964 -0.4134 -3.6658 17 8 2.6265 -1.4435 -3.7790 18 6 1.5924 0.3616 -4.8935 19 6 2.0905 -0.3515 -6.1242 20 6 1.4273 -1.2831 -6.8156 21 7 2.0790 -1.7572 -7.8583 22 6 3.2553 -1.2777 -8.0845 23 16 3.6473 -0.0989 -6.9097 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6053 -1.7197 1.2954 28 1 3.1262 -0.7993 1.2058 29 1 1.1487 0.8597 2.3517 30 1 0.6942 1.9161 5.4829 31 1 1.6054 -1.7198 -1.2950 32 1 3.1263 -0.7995 -1.2054 33 1 1.1488 0.8593 -2.3518 34 1 0.5058 0.4388 -4.9332 35 1 2.0264 1.3606 -4.8518 36 1 0.4379 -1.6193 -6.5428 37 1 3.8976 -1.5748 -8.9004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753620047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:01 Heat of formation + Delta-G solvation = 9.952648 kcal Electronic energy + Delta-G solvation = -18955.522943 eV Core-core repulsion = 15859.781179 eV Total energy + Delta-G solvation = -3095.741765 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -40.22242 -39.42032 -36.89644 -34.40925 -33.19084 -32.39676 -30.09751 -28.27329 -26.47662 -25.46530 -24.47280 -22.47425 -20.88125 -20.35728 -19.85156 -18.36511 -17.47142 -16.83591 -16.39342 -15.74040 -15.45850 -14.69410 -14.49082 -14.47683 -14.16343 -13.75432 -13.70099 -13.27565 -13.02686 -12.93289 -12.53378 -12.26763 -12.06274 -11.50397 -11.08963 -10.92566 -10.73007 -10.60447 -10.46685 -10.18801 -10.02118 -9.92346 -9.70339 -9.49027 -9.17872 -9.10366 -8.89081 -6.94516 -5.78808 -3.07307 0.41965 1.08774 1.47429 2.48790 2.56054 3.14622 3.43489 3.47763 3.48840 4.04802 4.34365 4.57633 4.67287 4.70873 4.97055 5.02093 5.06925 5.17784 5.34555 5.40366 5.55894 5.77284 5.86173 5.92508 5.95016 6.07369 6.20294 6.35146 6.42183 6.62046 6.74197 6.83580 7.37953 7.43044 7.68404 8.09036 8.40380 9.51583 10.08544 10.43373 11.44121 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.054235 B = 0.002396 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.147608 B =11681.212550 C =11803.592406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.723 5.723 16 C 0.510 3.490 17 O -0.532 6.532 18 C -0.066 4.066 19 C -0.198 4.198 20 C 0.043 3.957 21 N -0.471 5.471 22 C 0.014 3.986 23 S 0.134 5.866 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.384 0.616 30 H 0.256 0.744 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.174 0.826 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.171 0.784 -25.066 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.375 5.375 16 C 0.294 3.706 17 O -0.408 6.408 18 C -0.108 4.108 19 C -0.319 4.319 20 C -0.108 4.108 21 N -0.184 5.184 22 C -0.283 4.283 23 S 0.387 5.613 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.236 0.764 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.191 0.809 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.374 0.132 -25.231 25.343 hybrid contribution -0.953 0.017 1.258 1.578 sum 1.421 0.148 -23.973 24.015 Atomic orbital electron populations 1.21790 0.94630 1.01958 1.01498 1.21554 0.96734 1.00492 0.94171 0.90509 1.20575 0.96610 0.94219 0.85384 1.42329 1.66980 1.27651 1.00573 1.19191 1.28785 1.05433 0.83664 0.91213 1.24738 1.01008 0.97393 0.97878 1.69643 1.43524 1.16564 1.28640 0.86248 0.78029 0.77716 0.84086 1.21253 1.21690 1.21254 1.21430 1.00166 0.95279 0.82815 1.46042 1.57705 1.27975 1.05827 1.20387 0.79939 0.85897 0.84367 1.90746 1.39400 1.24119 1.86572 1.20064 1.03503 0.99073 0.88163 1.25295 0.97955 1.05588 1.03100 1.21691 1.01951 0.95371 0.91809 1.66304 1.06832 1.26560 1.18674 1.28348 0.96753 0.99375 1.03859 1.84001 1.16987 1.38703 1.21630 0.93895 0.92819 0.91131 0.96004 0.96150 0.78209 0.93467 0.91304 0.91342 0.76408 0.86559 0.87437 0.80909 0.78509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.15 0.33 -1.65 16 2 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 5 N -0.73 -18.09 5.33 -59.91 -0.32 -18.41 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 10 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 15 N -0.72 -7.52 5.28 -60.30 -0.32 -7.83 16 16 C 0.51 5.76 7.82 -10.98 -0.09 5.68 16 17 O -0.53 -8.42 16.03 5.55 0.09 -8.33 16 18 C -0.07 -0.49 6.24 -29.03 -0.18 -0.67 16 19 C -0.20 -1.87 5.09 -35.92 -0.18 -2.06 16 20 C 0.04 0.45 11.25 -19.19 -0.22 0.23 16 21 N -0.47 -5.26 10.54 -15.75 -0.17 -5.43 16 22 C 0.01 0.12 12.23 51.58 0.63 0.75 16 23 S 0.13 1.14 23.22 -107.50 -2.50 -1.36 16 24 H 0.04 0.47 7.18 -51.93 -0.37 0.09 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.18 7.18 -51.93 -0.37 0.80 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.38 9.85 6.85 -40.82 -0.28 9.57 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.40 3.11 7.66 -40.82 -0.31 2.80 16 34 H 0.12 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.20 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -34.49 330.84 -7.85 -42.34 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -5.11 Total: 6.07 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -0.22 Total: -2.15 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.08 Total: -58.88 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.50 Total: -1.36 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.49 -7.85 -42.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.297 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds