Wall clock time and date at job start Tue Mar 31 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.46906 * 2 1 4 4 C 1.53001 * 109.47067 * 119.99471 * 2 1 3 5 5 N 1.46507 * 109.47141 * 295.00092 * 4 2 1 6 6 C 1.36932 * 120.00060 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00095 * 0.02562 * 6 5 4 8 8 C 1.38812 * 120.00309 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99752 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00472 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46757 * 60.00246 * 10 8 6 12 12 H 1.48497 * 109.47229 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47146 * 300.00525 * 10 8 6 14 14 C 1.52999 * 109.47225 * 239.99595 * 2 1 3 15 15 N 1.46497 * 109.46992 * 64.99918 * 14 2 1 16 16 C 1.34777 * 119.99525 * 179.97438 * 15 14 2 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 14 19 19 C 1.50703 * 109.47148 * 180.28037 * 18 16 15 20 20 C 1.33633 * 126.04043 * 89.99780 * 19 18 16 21 21 N 1.31782 * 114.50271 * 179.97438 * 20 19 18 22 22 C 1.29027 * 117.12355 * 0.02562 * 21 20 19 23 23 S 1.70978 * 110.16563 * 359.72471 * 22 21 20 24 24 H 1.08998 * 109.47345 * 60.00294 * 1 2 3 25 25 H 1.09002 * 109.47301 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47633 * 300.00467 * 1 2 3 27 27 H 1.08996 * 109.47431 * 54.99985 * 4 2 1 28 28 H 1.09001 * 109.47356 * 175.00798 * 4 2 1 29 29 H 0.97003 * 120.00137 * 359.97438 * 5 4 2 30 30 H 0.96998 * 120.00372 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.46838 * 304.99806 * 14 2 1 32 32 H 1.09001 * 109.46617 * 185.00141 * 14 2 1 33 33 H 0.97000 * 120.00580 * 0.02562 * 15 14 2 34 34 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 35 35 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 36 36 H 1.08004 * 122.75084 * 0.02562 * 20 19 18 37 37 H 1.08003 * 124.91835 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6523 0.0356 2.4424 6 6 2.0009 -0.4204 3.6856 7 1 2.5619 -1.3377 3.7866 8 6 1.6341 0.2968 4.8161 9 7 0.9508 1.4150 4.6930 10 14 2.1090 -0.3256 6.5121 11 1 3.5881 -0.4171 6.6095 12 1 1.6016 0.6138 7.5442 13 1 1.5146 -1.6687 6.7309 14 6 2.0399 -0.7213 -1.2492 15 7 1.6524 0.0352 -2.4423 16 6 1.9964 -0.4134 -3.6658 17 8 2.6265 -1.4435 -3.7790 18 6 1.5924 0.3616 -4.8935 19 6 2.0905 -0.3515 -6.1242 20 6 1.4273 -1.2831 -6.8156 21 7 2.0790 -1.7572 -7.8583 22 6 3.2553 -1.2777 -8.0845 23 16 3.6473 -0.0989 -6.9097 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6053 -1.7197 1.2954 28 1 3.1262 -0.7993 1.2058 29 1 1.1487 0.8597 2.3517 30 1 0.6942 1.9161 5.4829 31 1 1.6054 -1.7198 -1.2950 32 1 3.1263 -0.7995 -1.2054 33 1 1.1488 0.8593 -2.3518 34 1 0.5058 0.4388 -4.9332 35 1 2.0264 1.3606 -4.8518 36 1 0.4379 -1.6193 -6.5428 37 1 3.8976 -1.5748 -8.9004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753620047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:00 Heat of formation + Delta-G solvation = -15.183758 kcal Electronic energy + Delta-G solvation = -18956.612940 eV Core-core repulsion = 15859.781179 eV Total energy + Delta-G solvation = -3096.831761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.04564 -40.23651 -38.23435 -35.95726 -34.22555 -33.64684 -31.86426 -29.04966 -27.67512 -26.93578 -25.43391 -24.17257 -21.78899 -21.36923 -20.85465 -19.29522 -18.97050 -18.00735 -17.35369 -16.72207 -16.53662 -16.23481 -15.57309 -15.52245 -15.34872 -15.00425 -14.83604 -14.44435 -14.24253 -13.86580 -13.72386 -13.53660 -13.21773 -12.95418 -12.77214 -12.21882 -12.17321 -12.12925 -11.98312 -11.70786 -11.64800 -11.06734 -10.93619 -10.62161 -10.19338 -10.08459 -9.85095 -8.99586 -7.95669 -5.23838 -0.24730 0.46068 0.81326 1.47641 1.50200 1.56345 1.63390 1.83569 2.28416 2.57076 3.37823 3.44559 3.70107 3.74362 3.96340 3.98835 4.11065 4.16189 4.36143 4.39842 4.55773 4.58850 4.71130 4.78326 4.80581 4.94854 5.06716 5.13401 5.20114 5.34575 5.42822 5.49241 5.51106 6.27132 6.56719 6.75514 7.25879 7.34034 8.09256 8.33734 9.27483 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.054235 B = 0.002396 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.147608 B =11681.212550 C =11803.592406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.094 4.094 3 H 0.081 0.919 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.248 4.248 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.139 3.861 15 N -0.712 5.712 16 C 0.510 3.490 17 O -0.582 6.582 18 C -0.058 4.058 19 C -0.210 4.210 20 C 0.025 3.975 21 N -0.505 5.505 22 C 0.012 3.988 23 S 0.147 5.853 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.377 0.623 30 H 0.252 0.748 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.418 0.582 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.182 0.818 37 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.197 1.266 -26.066 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 H 0.099 0.901 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.380 4.380 7 H 0.090 0.910 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.205 1.205 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.014 3.986 15 N -0.365 5.365 16 C 0.296 3.704 17 O -0.461 6.461 18 C -0.100 4.100 19 C -0.332 4.332 20 C -0.126 4.126 21 N -0.219 5.219 22 C -0.285 4.285 23 S 0.400 5.600 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.210 0.790 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.255 0.745 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.199 0.801 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.397 0.622 -26.257 26.373 hybrid contribution -0.914 -0.170 1.497 1.762 sum 1.484 0.451 -24.759 24.808 Atomic orbital electron populations 1.21729 0.93773 1.01856 1.01928 1.21329 0.97225 1.00093 0.92615 0.90093 1.20734 0.96444 0.94122 0.85846 1.42495 1.66840 1.27803 1.01299 1.19579 1.28003 1.05306 0.85132 0.90997 1.25536 1.01684 0.97892 1.01480 1.69788 1.44979 1.17770 1.29224 0.85230 0.77887 0.77175 0.79581 1.20499 1.21969 1.20528 1.21085 0.99336 0.94998 0.83142 1.45868 1.57520 1.28222 1.04855 1.21039 0.78720 0.85352 0.85253 1.90733 1.41688 1.26473 1.87248 1.20164 1.05616 0.99144 0.85026 1.25576 0.98222 1.05658 1.03713 1.21949 1.02682 0.95849 0.92099 1.66325 1.08021 1.27846 1.19687 1.28873 0.96398 0.98833 1.04380 1.83919 1.16569 1.38318 1.21237 0.90084 0.93196 0.94003 0.96315 0.96425 0.79013 0.93918 0.92119 0.92442 0.74479 0.83339 0.84673 0.80096 0.75803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.94 71.98 0.64 -2.95 16 2 C -0.09 -2.64 2.46 -10.80 -0.03 -2.67 16 3 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 4 C 0.16 6.05 5.65 86.38 0.49 6.54 16 5 N -0.74 -36.91 5.33 -343.45 -1.83 -38.74 16 6 C -0.25 -13.86 9.99 84.03 0.84 -13.03 16 7 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 8 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 9 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 10 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 C 0.14 3.46 5.06 86.38 0.44 3.90 16 15 N -0.71 -12.99 5.28 -463.07 -2.45 -15.44 16 16 C 0.51 10.44 7.82 87.66 0.69 11.12 16 17 O -0.58 -17.90 16.03 -3.04 -0.05 -17.95 16 18 C -0.06 -0.68 6.24 29.10 0.18 -0.50 16 19 C -0.21 -3.60 5.09 24.64 0.13 -3.47 16 20 C 0.03 0.49 11.25 83.65 0.94 1.43 16 21 N -0.50 -10.90 10.54 -203.74 -2.15 -13.05 16 22 C 0.01 0.19 12.23 130.65 1.60 1.79 16 23 S 0.15 2.26 23.22 -56.49 -1.31 0.95 16 24 H 0.08 1.52 7.18 -2.39 -0.02 1.50 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.04 1.37 7.18 -2.39 -0.02 1.35 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.38 19.58 6.85 -92.71 -0.64 18.95 16 30 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.42 4.96 7.66 -92.71 -0.71 4.25 16 34 H 0.15 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.23 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -75.15 330.84 0.65 -74.50 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -0.25 Total: 21.34 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 6.38 Total: -1.57 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -6.14 Total: -125.25 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.05 Total: -17.95 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.31 Total: 0.95 kcal Total: -75.15 0.65 -74.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.312 kcal (2) G-P(sol) polarization free energy of solvation -75.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds