Wall clock time and date at job start Tue Mar 31 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47377 * 2 1 4 4 N 1.46498 * 109.47461 * 120.00317 * 2 1 3 5 5 C 1.46494 * 120.00470 * 141.30513 * 4 2 1 6 6 C 1.50701 * 109.47264 * 270.00712 * 5 4 2 7 7 H 1.07999 * 120.00221 * 359.97438 * 6 5 4 8 8 C 1.37887 * 120.00122 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99359 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00051 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47171 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.46775 * 119.99684 * 10 8 6 13 13 H 1.48493 * 109.47101 * 240.00044 * 10 8 6 14 14 C 1.34777 * 119.99872 * 321.31009 * 4 2 1 15 15 O 1.21567 * 120.00278 * 141.67934 * 14 4 2 16 16 C 1.47701 * 119.99653 * 321.68053 * 14 4 2 17 17 C 1.39657 * 120.15671 * 30.79276 * 16 14 4 18 18 C 1.38064 * 119.85107 * 179.79162 * 17 16 14 19 19 F 1.35100 * 119.91712 * 180.20408 * 18 17 16 20 20 C 1.38657 * 120.16573 * 0.48148 * 18 17 16 21 21 C 1.38186 * 120.31573 * 359.74747 * 20 18 17 22 22 C 1.38308 * 120.14307 * 0.02562 * 21 20 18 23 23 F 1.35105 * 120.08246 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47489 * 289.47880 * 1 2 3 25 25 H 1.09003 * 109.47268 * 49.47762 * 1 2 3 26 26 H 1.08998 * 109.47193 * 169.47284 * 1 2 3 27 27 H 1.09001 * 109.47120 * 240.00311 * 2 1 3 28 28 H 1.08995 * 109.47588 * 217.46826 * 3 2 1 29 29 H 1.09009 * 109.46956 * 337.47257 * 3 2 1 30 30 H 1.09005 * 109.46861 * 97.46587 * 3 2 1 31 31 H 1.09007 * 109.47201 * 30.00251 * 5 4 2 32 32 H 1.08995 * 109.47495 * 149.99837 * 5 4 2 33 33 H 0.97009 * 119.99149 * 180.02562 * 9 8 6 34 34 H 1.07997 * 120.07076 * 0.02562 * 17 16 14 35 35 H 1.08004 * 119.84401 * 179.72493 * 20 18 17 36 36 H 1.07995 * 119.92950 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.1961 -1.5578 1.1117 6 6 2.7625 -2.9635 0.7846 7 1 1.7145 -3.1886 0.6531 8 6 3.7038 -3.9626 0.6542 9 7 4.9800 -3.6885 0.8148 10 14 3.1664 -5.7052 0.2493 11 1 1.6876 -5.7498 0.1204 12 1 3.7883 -6.1303 -1.0304 13 1 3.5957 -6.6208 1.3367 14 6 1.3841 -0.5284 2.3742 15 8 1.2556 -1.4715 3.1304 16 6 0.8450 0.7954 2.7463 17 6 0.3965 1.6736 1.7574 18 6 -0.1103 2.9078 2.1127 19 9 -0.5483 3.7567 1.1573 20 6 -0.1654 3.2804 3.4471 21 6 0.2809 2.4188 4.4309 22 6 0.7866 1.1775 4.0899 23 9 1.2231 0.3363 5.0528 24 1 -0.3634 0.3427 0.9688 25 1 -0.3634 0.6677 -0.7812 26 1 -0.3633 -1.0103 -0.1878 27 1 1.8933 -0.5138 -0.8900 28 1 2.9301 1.5132 -0.6251 29 1 1.2661 2.1015 -0.3938 30 1 2.2870 1.7405 1.0190 31 1 3.8616 -1.1916 0.3299 32 1 3.7205 -1.5523 2.0672 33 1 5.6423 -4.3914 0.7227 34 1 0.4424 1.3864 0.7173 35 1 -0.5587 4.2489 3.7188 36 1 0.2346 2.7153 5.4684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:56 Heat of formation + Delta-G solvation = -16.676886 kcal Electronic energy + Delta-G solvation = -23073.641723 eV Core-core repulsion = 19390.612077 eV Total energy + Delta-G solvation = -3683.029646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.01451 -48.76910 -40.81207 -37.86108 -36.59764 -33.53024 -31.85572 -30.87111 -29.80521 -27.37723 -27.05803 -24.24373 -23.49422 -22.38500 -21.61735 -18.93677 -17.91813 -17.20979 -17.07226 -16.42384 -16.01746 -15.75595 -15.45805 -15.30896 -15.06238 -14.60746 -14.39726 -14.03013 -13.52696 -13.39640 -13.20034 -12.64212 -12.52752 -12.35371 -12.23571 -11.81377 -11.62472 -11.34933 -11.19983 -11.12760 -10.83512 -10.61208 -10.11472 -9.95128 -9.62699 -9.23652 -9.06294 -8.60479 -8.42861 -7.63427 -6.03110 -4.06865 0.62850 0.89875 2.84966 3.31709 3.39586 3.44296 3.51390 3.68295 4.05975 4.13121 4.41309 4.47031 4.61534 4.84166 4.91780 4.96718 5.17629 5.31006 5.33057 5.59500 5.61492 5.70064 5.71639 5.78893 5.84299 5.93831 6.03206 6.15225 6.33002 6.43291 6.64450 7.01599 7.29493 7.56287 7.93592 8.21645 8.30144 8.71436 8.99230 9.58055 11.04583 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023848 B = 0.005492 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.826212 B = 5097.242693 C = 5771.075300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.136 3.864 3 C -0.186 4.186 4 N -0.614 5.614 5 C 0.255 3.745 6 C -0.519 4.519 7 H 0.061 0.939 8 C 0.059 3.941 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.564 3.436 15 O -0.490 6.490 16 C -0.146 4.146 17 C -0.148 4.148 18 C 0.063 3.937 19 F -0.136 7.136 20 C -0.108 4.108 21 C -0.145 4.145 22 C 0.143 3.857 23 F -0.116 7.116 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.224 0.776 35 H 0.144 0.856 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 16.065 0.760 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C 0.032 3.968 3 C -0.243 4.243 4 N -0.348 5.348 5 C 0.137 3.863 6 C -0.558 4.558 7 H 0.079 0.921 8 C -0.143 4.143 9 N -0.538 5.538 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.209 1.209 14 C 0.349 3.651 15 O -0.363 6.363 16 C -0.151 4.151 17 C -0.165 4.165 18 C 0.043 3.957 19 F -0.115 7.115 20 C -0.127 4.127 21 C -0.164 4.164 22 C 0.122 3.878 23 F -0.094 7.094 24 H 0.107 0.893 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.239 0.761 35 H 0.162 0.838 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.311 15.418 1.177 18.050 hybrid contribution -0.146 -0.869 -0.124 0.890 sum -9.457 14.549 1.053 17.385 Atomic orbital electron populations 1.23314 0.96093 1.04133 1.03683 1.21065 0.92933 0.92389 0.90443 1.22974 1.01670 0.96673 1.03030 1.47911 1.32134 1.49080 1.05663 1.19299 0.80580 0.88418 0.98038 1.21530 0.93719 0.93279 1.47293 0.92064 1.24952 0.94797 0.99135 0.95399 1.69939 1.00271 1.33375 1.50247 0.86438 0.78789 0.84413 0.77772 1.19774 1.21064 1.20945 1.17727 0.78443 0.85971 0.82919 1.90804 1.51942 1.40434 1.53111 1.20531 1.04485 0.98034 0.92028 1.24140 0.95255 0.91224 1.05890 1.17547 1.02982 0.89325 0.85829 1.91503 1.87474 1.69541 1.62995 1.21097 1.00048 1.00717 0.90812 1.20889 1.02030 0.92456 1.01047 1.17742 0.96794 0.88534 0.84734 1.91599 1.86356 1.70042 1.61383 0.89322 0.90621 0.90910 0.87881 0.91746 0.91687 0.91126 0.94447 0.94948 0.92830 0.76088 0.83821 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.94 7.74 37.15 0.29 -2.66 16 2 C 0.14 2.17 3.19 -67.94 -0.22 1.96 16 3 C -0.19 -2.40 8.07 37.16 0.30 -2.10 16 4 N -0.61 -12.87 2.33 -168.64 -0.39 -13.26 16 5 C 0.26 6.53 5.09 -5.20 -0.03 6.50 16 6 C -0.52 -14.68 9.26 -34.44 -0.32 -15.00 16 7 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.56 12.07 5.91 -12.39 -0.07 12.00 16 15 O -0.49 -12.63 16.23 5.31 0.09 -12.54 16 16 C -0.15 -2.45 5.00 -104.92 -0.52 -2.97 16 17 C -0.15 -2.00 4.20 -39.12 -0.16 -2.16 16 18 C 0.06 0.73 7.29 -39.49 -0.29 0.44 16 19 F -0.14 -1.54 17.26 2.25 0.04 -1.50 16 20 C -0.11 -1.09 10.01 -39.45 -0.39 -1.48 16 21 C -0.15 -1.64 10.01 -39.57 -0.40 -2.04 16 22 C 0.14 2.23 7.24 -38.97 -0.28 1.94 16 23 F -0.12 -2.10 16.00 2.25 0.04 -2.06 16 24 H 0.09 1.26 3.53 -66.93 -0.24 1.02 16 25 H 0.08 0.77 7.81 -51.93 -0.41 0.36 16 26 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 27 H 0.10 1.68 8.01 -51.93 -0.42 1.26 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.67 6.65 -51.92 -0.35 0.33 16 30 H 0.07 0.99 5.55 -51.93 -0.29 0.71 16 31 H 0.04 0.95 8.07 -51.92 -0.42 0.53 16 32 H 0.03 0.92 8.03 -51.93 -0.42 0.51 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.22 2.82 0.80 -103.06 -0.08 2.74 16 35 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 36 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 301.44 15.07 4.54 4.54 Total: -1.00 -32.57 301.44 -6.02 -38.59 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -3.85 Total: -1.04 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.20 Total: -3.99 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.34 Total: -39.06 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.07 Total: -3.56 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.57 -6.02 -38.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.910 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds