Wall clock time and date at job start Tue Mar 31 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47307 * 2 1 4 4 N 1.46495 * 109.47405 * 120.00028 * 2 1 3 5 5 C 1.46500 * 119.99977 * 293.37009 * 4 2 1 6 6 C 1.50695 * 109.47300 * 269.99961 * 5 4 2 7 7 H 1.08005 * 119.99935 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00458 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99890 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00018 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47013 * 89.99835 * 10 8 6 12 12 H 1.48504 * 109.46823 * 209.99468 * 10 8 6 13 13 H 1.48500 * 109.47386 * 329.99741 * 10 8 6 14 14 C 1.34775 * 120.00203 * 113.36135 * 4 2 1 15 15 O 1.21571 * 119.99950 * 182.60443 * 14 4 2 16 16 C 1.47730 * 119.99904 * 2.61487 * 14 4 2 17 17 C 1.39656 * 120.10585 * 313.15312 * 16 14 4 18 18 C 1.37846 * 119.92434 * 180.02562 * 17 16 14 19 19 C 1.38608 * 120.14778 * 0.02562 * 18 17 16 20 20 F 1.35105 * 119.88768 * 180.27703 * 19 18 17 21 21 C 1.38833 * 120.21943 * 0.02562 * 19 18 17 22 22 F 1.35105 * 119.96424 * 179.97438 * 21 19 18 23 23 C 1.38057 * 120.07256 * 359.97426 * 21 19 18 24 24 H 1.08996 * 109.47442 * 300.00162 * 1 2 3 25 25 H 1.09001 * 109.47349 * 60.00230 * 1 2 3 26 26 H 1.09001 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47194 * 240.00296 * 2 1 3 28 28 H 1.08995 * 109.47544 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46729 * 300.00150 * 3 2 1 30 30 H 1.08996 * 109.47002 * 59.99569 * 3 2 1 31 31 H 1.09000 * 109.47142 * 29.99757 * 5 4 2 32 32 H 1.09002 * 109.47422 * 149.99598 * 5 4 2 33 33 H 0.96998 * 120.00384 * 180.02562 * 9 8 6 34 34 H 1.08001 * 120.03176 * 0.02562 * 17 16 14 35 35 H 1.08001 * 119.92488 * 180.02562 * 18 17 16 36 36 H 1.08003 * 120.07467 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7881 -0.1112 2.5218 6 6 2.9387 0.7930 2.8816 7 1 3.7597 0.9227 2.1920 8 6 2.9440 1.4539 4.0917 9 7 1.9445 1.2955 4.9318 10 14 4.3707 2.5740 4.5380 11 1 4.0830 3.9530 4.0681 12 1 4.5522 2.5811 6.0119 13 1 5.6110 2.0785 3.8888 14 6 2.6793 -1.8590 1.0770 15 8 3.0431 -2.4558 2.0717 16 6 2.9621 -2.4145 -0.2624 17 6 1.9533 -2.4654 -1.2269 18 6 2.2211 -2.9850 -2.4753 19 6 3.4891 -3.4575 -2.7753 20 9 3.7473 -3.9605 -4.0023 21 6 4.4962 -3.4108 -1.8207 22 9 5.7302 -3.8733 -2.1185 23 6 4.2380 -2.8923 -0.5675 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.8629 0.4651 2.5108 32 1 1.7095 -0.9102 3.2590 33 1 1.9480 1.7607 5.7829 34 1 0.9645 -2.0981 -0.9948 35 1 1.4411 -3.0240 -3.2213 36 1 5.0215 -2.8556 0.1749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:04 Heat of formation + Delta-G solvation = -95.756694 kcal Electronic energy + Delta-G solvation = -22442.404663 eV Core-core repulsion = 18755.945859 eV Total energy + Delta-G solvation = -3686.458804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.59191 -48.66135 -40.16808 -37.91728 -36.16377 -32.94287 -31.22563 -30.96378 -30.77156 -27.42210 -26.77922 -24.21241 -23.32040 -22.60014 -21.30976 -19.14890 -17.86865 -17.57438 -17.19525 -16.53654 -16.42085 -15.93498 -15.39329 -15.07455 -14.74949 -14.49667 -14.31744 -14.09969 -13.65755 -13.58445 -13.09126 -12.88528 -12.45932 -12.35939 -12.01817 -11.77710 -11.69719 -11.45859 -11.23273 -11.00651 -10.93229 -10.62936 -10.45286 -10.10013 -9.62767 -9.28735 -9.21356 -8.74140 -8.47071 -7.79962 -6.08801 -4.12612 0.56380 0.83298 2.89797 3.27066 3.33386 3.35138 3.41758 3.62122 3.78886 4.18571 4.39352 4.45210 4.58637 4.78682 4.94147 5.16866 5.25833 5.42798 5.48421 5.55362 5.62547 5.68564 5.75044 5.90792 6.02236 6.08613 6.18668 6.30381 6.51528 6.53677 6.90882 6.99379 7.37092 7.43615 7.87206 8.17454 8.25801 8.77184 8.94438 9.51797 10.99438 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021965 B = 0.004917 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.473991 B = 5693.220451 C = 6252.984990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 C -0.154 4.154 4 N -0.579 5.579 5 C 0.246 3.754 6 C -0.522 4.522 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.546 3.454 15 O -0.528 6.528 16 C -0.091 4.091 17 C -0.078 4.078 18 C -0.131 4.131 19 C 0.075 3.925 20 F -0.129 7.129 21 C 0.064 3.936 22 F -0.128 7.128 23 C -0.080 4.080 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.118 -4.974 -15.879 16.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 C -0.212 4.212 4 N -0.310 5.310 5 C 0.127 3.873 6 C -0.561 4.561 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.331 3.669 15 O -0.406 6.406 16 C -0.095 4.095 17 C -0.097 4.097 18 C -0.150 4.150 19 C 0.055 3.945 20 F -0.108 7.108 21 C 0.044 3.956 22 F -0.106 7.106 23 C -0.099 4.099 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.168 0.832 35 H 0.168 0.832 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.951 -5.237 -15.187 16.183 hybrid contribution 1.086 0.534 0.004 1.210 sum -0.865 -4.703 -15.183 15.918 Atomic orbital electron populations 1.22228 0.95505 1.01715 1.02886 1.21396 0.94046 0.94809 0.88440 1.22094 1.01740 0.95109 1.02269 1.48302 1.53278 1.19974 1.09444 1.19321 0.96926 0.94062 0.76971 1.21404 1.05944 1.26315 1.02449 0.92305 1.24912 0.96135 0.96961 0.96005 1.69922 1.31068 1.42941 1.09369 0.86537 0.82743 0.80699 0.77706 1.20641 1.21125 1.19920 1.17953 0.79687 0.81988 0.87276 1.90805 1.51999 1.59754 1.38002 1.20221 0.93602 0.99820 0.95847 1.21469 1.00185 0.96624 0.91406 1.20987 0.94888 1.00534 0.98594 1.17836 0.94241 1.01668 0.80772 1.91526 1.94615 1.84934 1.39699 1.17489 0.80516 1.03293 0.94337 1.91538 1.39023 1.86497 1.93551 1.21130 0.97995 0.96237 0.94556 0.91124 0.91870 0.92840 0.89741 0.92407 0.93153 0.90101 0.94488 0.93720 0.92702 0.83172 0.83192 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.82 37.16 0.33 -1.77 16 2 C 0.12 1.76 2.42 -67.93 -0.16 1.60 16 3 C -0.15 -2.42 8.33 37.16 0.31 -2.11 16 4 N -0.58 -11.43 2.38 -168.62 -0.40 -11.83 16 5 C 0.25 6.01 4.45 -5.20 -0.02 5.99 16 6 C -0.52 -13.93 7.86 -34.44 -0.27 -14.20 16 7 H 0.06 1.57 7.51 -52.48 -0.39 1.18 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 10 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 14 C 0.55 10.91 7.25 -12.38 -0.09 10.82 16 15 O -0.53 -12.90 16.57 5.30 0.09 -12.81 16 16 C -0.09 -1.39 5.09 -104.97 -0.53 -1.93 16 17 C -0.08 -0.91 7.30 -39.20 -0.29 -1.20 16 18 C -0.13 -1.32 10.01 -39.59 -0.40 -1.71 16 19 C 0.08 0.90 7.31 -39.22 -0.29 0.62 16 20 F -0.13 -1.58 17.18 2.25 0.04 -1.54 16 21 C 0.06 0.86 7.30 -39.43 -0.29 0.57 16 22 F -0.13 -1.78 17.18 2.25 0.04 -1.74 16 23 C -0.08 -1.16 9.68 -39.13 -0.38 -1.54 16 24 H 0.07 1.04 6.94 -51.93 -0.36 0.68 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.62 7.04 -51.93 -0.37 0.25 16 27 H 0.08 1.09 4.30 -51.93 -0.22 0.86 16 28 H 0.06 0.98 7.93 -51.93 -0.41 0.56 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.49 6.92 -51.93 -0.36 1.13 16 31 H 0.04 0.91 6.73 -51.93 -0.35 0.56 16 32 H 0.04 1.26 7.39 -51.93 -0.38 0.87 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.15 1.53 5.27 -52.49 -0.28 1.25 16 35 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.15 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -30.70 309.44 -5.99 -36.69 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -3.95 Total: -1.50 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.18 Total: -3.27 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.33 Total: -36.71 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.08 Total: -3.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.70 -5.99 -36.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.067 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds