Wall clock time and date at job start Tue Mar 31 2020 05:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47429 * 269.99946 * 3 2 1 5 5 H 1.48498 * 109.47116 * 30.00463 * 3 2 1 6 6 H 1.48503 * 109.46936 * 149.99992 * 3 2 1 7 7 C 1.37878 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99695 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00161 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47273 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 C 1.50700 * 109.46869 * 179.72354 * 15 13 12 17 17 C 1.38254 * 119.96078 * 269.71849 * 16 15 13 18 18 C 1.38221 * 120.07010 * 179.76978 * 17 16 15 19 19 C 1.38414 * 119.99452 * 0.50897 * 18 17 16 20 20 F 1.35104 * 120.03281 * 179.72261 * 19 18 17 21 21 C 1.38647 * 119.92924 * 359.75007 * 19 18 17 22 22 F 1.35105 * 120.03324 * 180.02562 * 21 19 18 23 23 C 1.38207 * 119.96526 * 90.00282 * 16 15 13 24 24 H 0.96990 * 120.00275 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47217 * 60.00007 * 9 7 2 26 26 H 1.08997 * 109.47150 * 299.99540 * 9 7 2 27 27 H 1.08998 * 109.47307 * 59.99537 * 10 9 7 28 28 H 1.09005 * 109.46653 * 299.99472 * 10 9 7 29 29 H 1.08998 * 109.47382 * 59.99521 * 11 10 9 30 30 H 1.09002 * 109.47216 * 299.99958 * 11 10 9 31 31 H 0.97000 * 119.99484 * 359.97438 * 12 11 10 32 32 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 33 33 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 34 34 H 1.08002 * 119.96948 * 0.02562 * 17 16 15 35 35 H 1.08002 * 120.00354 * 180.26003 * 18 17 16 36 36 H 1.08004 * 120.00159 * 359.94885 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 -0.0014 11 6 5.5516 -2.6365 -0.0001 12 7 6.0400 -4.0176 -0.0009 13 6 7.3651 -4.2639 0.0005 14 8 8.1532 -3.3420 0.0019 15 6 7.8675 -5.6847 -0.0065 16 6 9.3745 -5.6846 -0.0102 17 6 10.0620 -5.6855 -1.2096 18 6 11.4442 -5.6806 -1.2157 19 6 12.1414 -5.6854 -0.0199 20 9 13.4924 -5.6863 -0.0250 21 6 11.4518 -5.6898 1.1829 22 9 12.1302 -5.6940 2.3512 23 6 10.0677 -5.6895 1.1855 24 1 -0.4850 0.8399 0.0004 25 1 3.8746 -0.6808 0.8904 26 1 3.8753 -0.6796 -0.8895 27 1 3.6586 -3.1493 -0.8920 28 1 3.6580 -3.1512 0.8880 29 1 5.9143 -2.1237 0.8907 30 1 5.9157 -2.1215 -0.8892 31 1 5.4097 -4.7549 -0.0016 32 1 7.5063 -6.2021 0.8823 33 1 7.5019 -6.1949 -0.8976 34 1 9.5186 -5.6859 -2.1430 35 1 11.9802 -5.6771 -2.1533 36 1 9.5294 -5.6925 2.1218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087249407.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:47 Heat of formation + Delta-G solvation = -120.818903 kcal Electronic energy + Delta-G solvation = -20591.375716 eV Core-core repulsion = 16903.830134 eV Total energy + Delta-G solvation = -3687.545583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.72450 -48.80174 -40.19720 -38.80381 -35.61101 -33.41968 -32.93182 -31.47944 -31.12968 -28.36469 -26.67240 -23.64269 -23.18702 -22.10929 -20.82896 -19.96060 -18.24537 -17.52200 -17.33034 -17.13792 -16.74082 -16.50248 -15.76645 -15.58309 -15.21383 -14.82502 -14.68232 -14.33790 -14.24553 -14.12324 -13.65793 -13.35368 -12.75869 -12.44370 -12.32215 -12.21957 -11.99510 -11.86735 -11.60255 -11.13716 -10.93158 -10.28550 -10.03584 -9.84027 -9.68597 -9.39024 -9.27063 -8.96096 -8.93317 -8.59083 -6.09851 -4.08880 0.55393 0.67223 2.58748 2.87887 3.28556 3.36101 3.37609 3.40375 3.47671 3.99732 4.12300 4.22485 4.41200 4.61557 4.72094 4.77375 4.93876 5.09116 5.24216 5.37420 5.45927 5.49628 5.56249 5.59087 5.65018 5.95077 5.96927 6.26604 6.38345 6.40295 6.62036 6.73307 7.17900 7.31373 7.51798 7.72458 8.20827 8.46293 8.93716 9.52348 11.03340 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.037101 B = 0.002475 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.514523 B =11309.044841 C =11474.917212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.114 3.886 12 N -0.725 5.725 13 C 0.508 3.492 14 O -0.537 6.537 15 C -0.105 4.105 16 C -0.043 4.043 17 C -0.086 4.086 18 C -0.123 4.123 19 C 0.064 3.936 20 F -0.131 7.131 21 C 0.069 3.931 22 F -0.130 7.130 23 C -0.112 4.112 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.401 0.599 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.992 -16.197 -1.259 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.376 5.376 13 C 0.293 3.707 14 O -0.413 6.413 15 C -0.145 4.145 16 C -0.044 4.044 17 C -0.104 4.104 18 C -0.142 4.142 19 C 0.043 3.957 20 F -0.109 7.109 21 C 0.049 3.951 22 F -0.108 7.108 23 C -0.130 4.130 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.235 0.765 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 21.475 -15.387 -1.205 26.446 hybrid contribution 0.352 0.638 0.233 0.765 sum 21.828 -14.749 -0.972 26.361 Atomic orbital electron populations 1.69904 1.06322 1.27008 1.50902 1.25030 0.94749 0.99253 0.94434 0.86777 0.80401 0.83526 0.78604 1.20230 1.21348 1.18907 1.21088 0.89286 0.94508 1.51218 0.91003 1.19503 0.97298 0.91465 0.96666 1.21705 0.90563 1.01086 1.01752 1.21669 0.96181 0.81073 1.01986 1.46166 1.06547 1.10148 1.74773 1.20392 0.82688 0.90757 0.76856 1.90747 1.55278 1.46185 1.49121 1.20724 0.91815 0.95863 1.06123 1.19193 0.94672 0.98133 0.92369 1.20961 0.93035 0.98056 0.98326 1.21047 0.94777 1.01683 0.96688 1.17702 0.77448 1.06929 0.93582 1.91526 1.28072 1.94063 1.97282 1.17603 0.90452 1.06614 0.80439 1.91534 1.79911 1.94035 1.45328 1.20924 0.91154 1.01035 0.99932 0.92659 0.96319 0.96758 0.92078 0.92073 0.91768 0.91745 0.76526 0.87331 0.87150 0.84182 0.83571 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.85 16 7 C -0.52 -14.43 9.66 -34.44 -0.33 -14.77 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -1.99 5.27 -26.73 -0.14 -2.13 16 11 C 0.11 1.74 5.67 -4.04 -0.02 1.72 16 12 N -0.73 -8.43 5.56 -60.29 -0.33 -8.77 16 13 C 0.51 6.00 7.82 -10.98 -0.09 5.92 16 14 O -0.54 -8.79 16.03 5.55 0.09 -8.71 16 15 C -0.11 -0.74 5.83 -29.03 -0.17 -0.91 16 16 C -0.04 -0.37 4.37 -104.63 -0.46 -0.83 16 17 C -0.09 -0.68 9.70 -39.58 -0.38 -1.06 16 18 C -0.12 -1.02 10.02 -39.52 -0.40 -1.42 16 19 C 0.06 0.66 7.31 -39.37 -0.29 0.37 16 20 F -0.13 -1.48 17.18 2.25 0.04 -1.44 16 21 C 0.07 0.75 7.31 -39.37 -0.29 0.46 16 22 F -0.13 -1.54 17.18 2.25 0.04 -1.50 16 23 C -0.11 -1.06 9.68 -39.53 -0.38 -1.44 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 26 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.40 3.46 8.47 -40.82 -0.35 3.11 16 32 H 0.11 0.52 8.08 -51.93 -0.42 0.10 16 33 H 0.11 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 322.74 15.07 4.86 4.86 Total: -1.00 -33.67 322.74 -6.86 -40.53 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -4.50 Total: -2.50 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.16 Total: -12.65 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.44 Total: -35.38 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.67 -6.86 -40.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087249407.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.290 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds