Wall clock time and date at job start Tue Mar 31 2020 05:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99767 * 2 1 4 4 H 1.48504 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47106 * 300.00261 * 3 2 1 6 6 H 1.48497 * 109.46718 * 60.00402 * 3 2 1 7 7 C 1.37877 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99933 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47043 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46793 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46843 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99918 * 179.97438 * 12 11 10 14 14 O 1.21277 * 119.99989 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99963 * 179.97438 * 13 12 11 16 16 C 1.50701 * 109.47139 * 180.02562 * 15 13 12 17 17 C 1.38425 * 120.02136 * 90.00372 * 16 15 13 18 18 F 1.35101 * 120.01402 * 359.70506 * 17 16 15 19 19 C 1.38476 * 119.97328 * 179.97438 * 17 16 15 20 20 C 1.38207 * 120.02410 * 0.02562 * 19 17 16 21 21 C 1.38207 * 120.05360 * 359.97438 * 20 19 17 22 22 C 1.38412 * 120.02814 * 269.98005 * 16 15 13 23 23 F 1.35096 * 120.01191 * 0.02562 * 22 16 15 24 24 H 0.96993 * 119.99918 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46687 * 60.00703 * 9 7 2 26 26 H 1.08996 * 109.47727 * 300.00679 * 9 7 2 27 27 H 1.09003 * 109.46488 * 60.00867 * 10 9 7 28 28 H 1.08994 * 109.47582 * 300.00077 * 10 9 7 29 29 H 1.08999 * 109.46674 * 60.00403 * 11 10 9 30 30 H 1.08994 * 109.47134 * 300.00369 * 11 10 9 31 31 H 0.97005 * 119.99976 * 0.02562 * 12 11 10 32 32 H 1.09008 * 109.46849 * 60.00905 * 15 13 12 33 33 H 1.09006 * 109.47704 * 300.00747 * 15 13 12 34 34 H 1.08001 * 119.98752 * 179.97438 * 19 17 16 35 35 H 1.08000 * 119.97200 * 180.02562 * 20 19 17 36 36 H 1.07995 * 119.99247 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9871 0.0001 12 7 2.4325 -6.1006 0.0007 13 6 1.9833 -7.3713 0.0019 14 8 0.7910 -7.5929 0.0019 15 6 2.9626 -8.5166 0.0019 16 6 2.2092 -9.8218 0.0027 17 6 1.8626 -10.4221 -1.1955 18 9 2.1943 -9.8351 -2.3663 19 6 1.1707 -11.6216 -1.1936 20 6 0.8259 -12.2192 0.0039 21 6 1.1714 -11.6208 1.2008 22 6 1.8637 -10.4214 1.2014 23 9 2.2014 -9.8367 2.3715 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 2.8720 -3.6042 0.8896 28 1 2.8722 -3.6043 -0.8904 29 1 0.8536 -5.0451 -0.8897 30 1 0.8541 -5.0446 0.8902 31 1 3.3862 -5.9232 0.0011 32 1 3.5899 -8.4583 0.8916 33 1 3.5888 -8.4595 -0.8885 34 1 0.8998 -12.0899 -2.1283 35 1 0.2866 -13.1549 0.0044 36 1 0.9011 -12.0883 2.1360 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087249409.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:24 Heat of formation + Delta-G solvation = -122.894034 kcal Electronic energy + Delta-G solvation = -21060.442777 eV Core-core repulsion = 17372.807210 eV Total energy + Delta-G solvation = -3687.635567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -49.23584 -49.23252 -39.82859 -38.74006 -35.44823 -33.40014 -33.18164 -31.21509 -30.57887 -28.35080 -26.36962 -23.37785 -23.16445 -22.25285 -20.74672 -19.93265 -18.41770 -17.64011 -17.12125 -16.62349 -16.21644 -15.95121 -15.84335 -15.49472 -15.37431 -15.26366 -14.66509 -14.45653 -14.09576 -13.78893 -13.49333 -13.04532 -12.62956 -12.30866 -12.22932 -11.97199 -11.86100 -11.62869 -11.60682 -10.92244 -10.74225 -10.57529 -9.98828 -9.87542 -9.46287 -9.17005 -9.05654 -9.02905 -8.79681 -8.37848 -6.02162 -4.05281 0.65832 0.69377 2.73190 2.97737 3.29847 3.37177 3.40434 3.46461 3.62434 4.10553 4.11956 4.34009 4.44125 4.48124 4.82869 4.90356 5.08334 5.13575 5.33697 5.48230 5.58042 5.62153 5.72191 5.72649 5.77845 5.83370 6.15820 6.45007 6.47265 6.59479 6.82151 6.99720 7.63421 7.66887 7.75712 7.96677 8.34032 8.38693 9.01650 9.59023 11.09214 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.036721 B = 0.002710 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.323284 B =10329.969722 C =10565.974193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.724 5.724 13 C 0.511 3.489 14 O -0.537 6.537 15 C -0.106 4.106 16 C -0.134 4.134 17 C 0.142 3.858 18 F -0.128 7.128 19 C -0.164 4.164 20 C -0.063 4.063 21 C -0.164 4.164 22 C 0.142 3.858 23 F -0.128 7.128 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.399 0.601 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -26.355 0.009 27.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.375 5.375 13 C 0.296 3.704 14 O -0.414 6.414 15 C -0.146 4.146 16 C -0.136 4.136 17 C 0.122 3.878 18 F -0.106 7.106 19 C -0.183 4.183 20 C -0.081 4.081 21 C -0.183 4.183 22 C 0.122 3.878 23 F -0.106 7.106 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.233 0.767 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.282 -26.321 0.008 26.845 hybrid contribution 0.972 1.346 0.001 1.660 sum 6.254 -24.975 0.009 25.746 Atomic orbital electron populations 1.69974 1.06071 1.26592 1.50647 1.25037 0.94858 0.99334 0.95280 0.86523 0.80043 0.83742 0.77607 1.19753 1.20992 1.20987 1.21241 0.93029 0.90922 1.50812 0.92581 1.19038 0.93860 0.90875 0.97665 1.21891 0.99769 0.93287 1.00903 1.21664 0.91874 0.85047 1.02025 1.46164 1.10896 1.05733 1.74697 1.20270 0.89439 0.83901 0.76757 1.90717 1.16660 1.84724 1.49302 1.20549 0.98001 0.89741 1.06273 1.19298 1.04737 0.97979 0.91606 1.17162 0.97771 0.92382 0.80446 1.91530 1.90217 1.83659 1.45211 1.21181 1.01477 0.95315 1.00348 1.20833 0.97219 0.99553 0.90519 1.21181 1.01499 0.95287 1.00354 1.17159 0.97738 0.92405 0.80454 1.91529 1.90060 1.83762 1.45270 0.92969 0.96269 0.96274 0.92690 0.92681 0.91738 0.91747 0.76706 0.87125 0.87127 0.83947 0.83892 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.12 2.10 5.67 -4.04 -0.02 2.08 16 12 N -0.72 -10.56 5.56 -60.30 -0.33 -10.89 16 13 C 0.51 7.80 7.82 -10.99 -0.09 7.71 16 14 O -0.54 -10.43 16.03 5.56 0.09 -10.35 16 15 C -0.11 -1.17 5.47 -29.04 -0.16 -1.33 16 16 C -0.13 -1.57 4.38 -104.49 -0.46 -2.03 16 17 C 0.14 1.59 7.24 -39.42 -0.29 1.30 16 18 F -0.13 -1.54 16.48 2.25 0.04 -1.51 16 19 C -0.16 -1.40 10.03 -39.50 -0.40 -1.80 16 20 C -0.06 -0.45 10.04 -39.60 -0.40 -0.85 16 21 C -0.16 -1.40 10.03 -39.50 -0.40 -1.80 16 22 C 0.14 1.59 7.24 -39.43 -0.29 1.30 16 23 F -0.13 -1.54 16.48 2.25 0.04 -1.50 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.40 4.54 8.47 -40.82 -0.35 4.20 16 32 H 0.11 0.99 7.64 -51.92 -0.40 0.60 16 33 H 0.11 0.99 7.64 -51.93 -0.40 0.60 16 34 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 324.26 15.07 4.89 4.89 Total: -1.00 -33.89 324.26 -7.23 -41.13 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.49 Total: -1.13 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -3.18 Total: -10.93 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.40 Total: -37.16 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.07 Total: -3.01 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.89 -7.23 -41.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087249409.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.769 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds