Wall clock time and date at job start Tue Mar 31 2020 05:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86810 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47324 * 240.00371 * 3 2 1 5 5 H 1.48499 * 109.46783 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46835 * 120.00280 * 3 2 1 7 7 C 1.37880 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00140 * 173.38592 * 7 2 1 9 9 C 1.50701 * 119.99385 * 353.38287 * 7 2 1 10 10 C 1.52998 * 115.55096 * 85.36771 * 9 7 2 11 11 N 1.46494 * 109.47374 * 65.11823 * 10 9 7 12 12 C 1.39937 * 120.00306 * 180.70748 * 11 10 9 13 13 C 1.38863 * 120.02147 * 179.97438 * 12 11 10 14 14 C 1.38111 * 119.97648 * 180.02562 * 13 12 11 15 15 C 1.38693 * 120.02312 * 0.02562 * 14 13 12 16 16 O 1.36005 * 119.98081 * 179.97438 * 15 14 13 17 17 C 1.42904 * 117.00048 * 180.02562 * 16 15 14 18 18 F 1.39894 * 109.47234 * 300.00340 * 17 16 15 19 19 F 1.39905 * 109.46860 * 60.00385 * 17 16 15 20 20 C 1.38695 * 120.03899 * 0.23940 * 15 14 13 21 21 C 1.38114 * 120.01878 * 359.48276 * 20 15 14 22 22 C 1.53003 * 117.49671 * 231.02939 * 9 7 2 23 23 C 1.52999 * 117.50113 * 299.69059 * 9 7 2 24 24 H 0.97002 * 120.00118 * 5.04903 * 1 2 3 25 25 H 1.08999 * 109.46740 * 305.11633 * 10 9 7 26 26 H 1.08996 * 109.47096 * 185.12041 * 10 9 7 27 27 H 0.97006 * 120.00330 * 0.71114 * 11 10 9 28 28 H 1.07998 * 120.01070 * 0.04401 * 13 12 11 29 29 H 1.08007 * 119.98706 * 180.02562 * 14 13 12 30 30 H 1.09000 * 109.47163 * 180.02562 * 17 16 15 31 31 H 1.08001 * 119.99467 * 179.72509 * 20 15 14 32 32 H 1.08001 * 120.00985 * 180.26467 * 21 20 15 33 33 H 1.08996 * 117.49954 * 215.00508 * 22 9 7 34 34 H 1.08999 * 117.49902 * 0.03014 * 22 9 7 35 35 H 1.09007 * 117.49565 * 359.97438 * 23 9 7 36 36 H 1.08996 * 117.50066 * 144.97659 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0792 -1.1971 -0.1083 9 6 1.2585 -2.4948 0.1493 10 6 0.6983 -3.0872 -1.1454 11 7 1.8044 -3.4601 -2.0305 12 6 1.5384 -4.0132 -3.2881 13 6 2.5866 -4.3664 -4.1276 14 6 2.3229 -4.9116 -5.3689 15 6 1.0117 -5.1059 -5.7771 16 8 0.7531 -5.6424 -6.9998 17 6 -0.6203 -5.8140 -7.3556 18 9 -1.2381 -6.6652 -6.4333 19 9 -1.2630 -4.5714 -7.3468 20 6 -0.0359 -4.7484 -4.9415 21 6 0.2259 -4.2083 -3.6976 22 6 1.7508 -3.4725 1.2183 23 6 0.4462 -2.7000 1.4295 24 1 -0.4850 0.8368 -0.0739 25 1 0.0698 -2.3474 -1.6412 26 1 0.1047 -3.9713 -0.9133 27 1 2.7214 -3.3238 -1.7448 28 1 3.6076 -4.2150 -3.8099 29 1 3.1381 -5.1868 -6.0218 30 1 -0.6856 -6.2502 -8.3524 31 1 -1.0566 -4.8959 -5.2619 32 1 -0.5899 -3.9339 -3.0453 33 1 1.6756 -4.5375 0.9993 34 1 2.6140 -3.1745 1.8136 35 1 0.4518 -1.8942 2.1636 36 1 -0.4875 -3.2566 1.3494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249577.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:29 Heat of formation + Delta-G solvation = -95.337053 kcal Electronic energy + Delta-G solvation = -21749.541455 eV Core-core repulsion = 18063.100849 eV Total energy + Delta-G solvation = -3686.440607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.33291 -47.33143 -39.67034 -37.87095 -36.64796 -33.71007 -32.00356 -30.70994 -28.76750 -26.23967 -25.50859 -24.79890 -22.53458 -21.39475 -20.99609 -19.31803 -18.81885 -18.12024 -17.88558 -16.58227 -16.19270 -15.75515 -15.02108 -14.69444 -14.49510 -14.03927 -13.92285 -13.86753 -13.67516 -13.55858 -13.21382 -13.01657 -12.85227 -12.59142 -12.41401 -11.77628 -11.58343 -11.44495 -11.02242 -10.94980 -10.57146 -10.54456 -10.28886 -9.60752 -9.32720 -8.85722 -8.70188 -8.51968 -8.24272 -6.64385 -6.11083 -4.18942 1.66186 1.91974 2.71575 3.25917 3.31470 3.33444 3.48426 4.11897 4.17107 4.28273 4.34336 4.64548 5.12863 5.14504 5.17455 5.29449 5.51909 5.65148 5.87205 5.96977 6.21630 6.27604 6.31253 6.38796 6.50128 6.63121 6.66152 6.74251 6.76315 6.87169 7.03063 7.33213 7.36173 7.44264 7.78726 8.03483 8.31379 8.48669 8.81448 9.47858 10.96864 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.003864 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.636059 B = 7245.463161 C = 7493.760007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.030 3.970 10 C 0.165 3.835 11 N -0.718 5.718 12 C 0.218 3.782 13 C -0.180 4.180 14 C -0.080 4.080 15 C 0.014 3.986 16 O -0.326 6.326 17 C 0.411 3.589 18 F -0.203 7.203 19 F -0.202 7.202 20 C -0.132 4.132 21 C -0.171 4.171 22 C -0.210 4.210 23 C -0.149 4.149 24 H 0.262 0.738 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.401 0.599 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.173 0.827 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 -10.938 -12.052 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.029 3.971 10 C 0.041 3.959 11 N -0.343 5.343 12 C 0.110 3.890 13 C -0.204 4.204 14 C -0.099 4.099 15 C -0.030 4.030 16 O -0.244 6.244 17 C 0.320 3.680 18 F -0.185 7.185 19 F -0.184 7.184 20 C -0.151 4.151 21 C -0.194 4.194 22 C -0.247 4.247 23 C -0.187 4.187 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.236 0.764 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.190 0.810 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.336 -10.774 -11.927 16.076 hybrid contribution 0.314 1.131 0.264 1.204 sum -0.022 -9.643 -11.663 15.133 Atomic orbital electron populations 1.69949 1.05899 1.27059 1.48407 1.24962 0.94804 0.98925 0.94233 0.86692 0.79699 0.83138 0.78686 1.20210 1.21247 1.20188 1.20295 0.92844 0.88620 1.51871 0.92318 1.18977 0.98508 0.93926 0.85665 1.21001 0.87849 0.95949 0.91095 1.44938 1.09855 1.65876 1.13604 1.18002 0.93143 0.91490 0.86373 1.20365 0.98192 1.07329 0.94490 1.20001 0.93249 1.00519 0.96124 1.18427 0.94593 1.04944 0.85049 1.86520 1.24264 1.79212 1.34442 1.23208 0.76192 0.75855 0.92698 1.93082 1.83513 1.71065 1.70845 1.93094 1.82458 1.45672 1.97171 1.21178 0.97842 1.01131 0.94962 1.20484 0.95529 1.06272 0.97099 1.23016 0.98590 0.95686 1.07448 1.22496 0.92261 1.01095 1.02848 0.92797 0.91524 0.95337 0.76425 0.85540 0.85658 0.81024 0.85735 0.85537 0.91622 0.90404 0.89852 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.02 12.92 55.43 0.72 -23.31 16 2 C 0.07 1.97 5.39 -17.82 -0.10 1.88 16 3 Si 0.89 20.63 29.55 -169.99 -5.02 15.60 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.50 -12.81 8.66 -34.44 -0.30 -13.11 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.69 1.37 -155.66 -0.21 0.48 16 10 C 0.16 3.53 4.74 -4.05 -0.02 3.51 16 11 N -0.72 -13.72 5.66 -58.59 -0.33 -14.06 16 12 C 0.22 3.88 6.66 -83.70 -0.56 3.32 16 13 C -0.18 -2.81 9.89 -39.40 -0.39 -3.20 16 14 C -0.08 -1.17 9.98 -39.46 -0.39 -1.56 16 15 C 0.01 0.21 6.48 -39.24 -0.25 -0.04 16 16 O -0.33 -4.25 10.43 -19.76 -0.21 -4.46 16 17 C 0.41 4.14 5.98 101.05 0.60 4.75 16 18 F -0.20 -2.40 15.59 2.25 0.04 -2.36 16 19 F -0.20 -2.47 15.56 2.25 0.04 -2.43 16 20 C -0.13 -2.14 8.25 -39.46 -0.33 -2.47 16 21 C -0.17 -3.01 9.31 -39.40 -0.37 -3.38 16 22 C -0.21 -4.34 9.96 -26.69 -0.27 -4.61 16 23 C -0.15 -3.34 9.42 -26.69 -0.25 -3.59 16 24 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 25 H 0.07 1.60 7.92 -51.93 -0.41 1.19 16 26 H 0.03 0.58 7.93 -51.93 -0.41 0.17 16 27 H 0.40 7.46 8.41 -40.82 -0.34 7.11 16 28 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.17 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.12 1.91 5.09 -52.49 -0.27 1.64 16 32 H 0.13 2.25 6.73 -52.49 -0.35 1.90 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 35 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -28.36 316.16 -7.13 -35.49 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.29 Total: 8.78 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -2.83 Total: -18.02 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.38 Total: -37.36 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.21 Total: -4.46 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.07 Total: -4.79 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.36 -7.13 -35.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249577.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.851 kcal (2) G-P(sol) polarization free energy of solvation -28.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds