Wall clock time and date at job start Tue Mar 31 2020 05:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48497 * 109.47136 * 270.00581 * 3 2 1 5 5 H 1.48508 * 109.46834 * 30.00014 * 3 2 1 6 6 H 1.48491 * 109.47253 * 149.99727 * 3 2 1 7 7 C 1.37878 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00324 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47231 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 C 1.50696 * 109.47259 * 179.72770 * 15 13 12 17 17 C 1.38233 * 119.98719 * 264.72759 * 16 15 13 18 18 C 1.38183 * 120.05096 * 179.72972 * 17 16 15 19 19 C 1.38504 * 120.02493 * 0.54253 * 18 17 16 20 20 F 1.35094 * 120.01217 * 179.75332 * 19 18 17 21 21 C 1.38394 * 119.97307 * 359.73049 * 19 18 17 22 22 C 1.38442 * 119.94991 * 359.97438 * 21 19 18 23 23 F 1.35102 * 120.01369 * 179.97438 * 22 21 19 24 24 H 0.96995 * 120.00404 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 26 26 H 1.09010 * 109.47143 * 300.00570 * 9 7 2 27 27 H 1.09004 * 109.46699 * 59.99971 * 10 9 7 28 28 H 1.08993 * 109.47124 * 300.00122 * 10 9 7 29 29 H 1.09004 * 109.47116 * 60.00455 * 11 10 9 30 30 H 1.08998 * 109.47794 * 300.00366 * 11 10 9 31 31 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 32 32 H 1.09001 * 109.46564 * 299.73030 * 15 13 12 33 33 H 1.08998 * 109.47012 * 59.72084 * 15 13 12 34 34 H 1.07999 * 119.96908 * 359.97413 * 17 16 15 35 35 H 1.08000 * 119.99166 * 180.24810 * 18 17 16 36 36 H 1.07995 * 120.02349 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5515 -2.6364 -0.0035 12 7 6.0399 -4.0177 -0.0040 13 6 7.3650 -4.2639 -0.0056 14 8 8.1531 -3.3420 -0.0116 15 6 7.8674 -5.6847 -0.0067 16 6 9.3744 -5.6847 -0.0152 17 6 10.0585 -5.7961 -1.2112 18 6 11.4403 -5.7906 -1.2210 19 6 12.1414 -5.6846 -0.0312 20 9 13.4924 -5.6843 -0.0407 21 6 11.4575 -5.5787 1.1672 22 6 10.0731 -5.5782 1.1753 23 9 9.4042 -5.4753 2.3446 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8746 -0.6799 -0.8912 27 1 3.6579 -3.1497 -0.8925 28 1 3.6587 -3.1509 0.8874 29 1 5.9156 -2.1231 0.8865 30 1 5.9142 -2.1221 -0.8934 31 1 5.4096 -4.7549 -0.0039 32 1 7.5091 -6.1974 0.8859 33 1 7.4990 -6.1997 -0.8940 34 1 9.5126 -5.8836 -2.1389 35 1 11.9739 -5.8737 -2.1563 36 1 12.0034 -5.4956 2.0954 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094817205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:14 Heat of formation + Delta-G solvation = -120.665707 kcal Electronic energy + Delta-G solvation = -20800.915666 eV Core-core repulsion = 17113.376726 eV Total energy + Delta-G solvation = -3687.538940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.32462 -49.26282 -40.02692 -38.76973 -35.58484 -33.40106 -32.99629 -31.46008 -31.13632 -28.30034 -26.61324 -23.58446 -23.17814 -22.11888 -20.79681 -19.92200 -18.53557 -17.59509 -17.20727 -16.80705 -16.39396 -16.15195 -15.96666 -15.54819 -15.52508 -15.14288 -14.73417 -14.34606 -14.23068 -14.05313 -13.57030 -13.18877 -12.73251 -12.46473 -12.24563 -12.13393 -11.94720 -11.89502 -11.68089 -11.11244 -10.91358 -10.26041 -10.01317 -9.82032 -9.66932 -9.39376 -9.25241 -8.92820 -8.91965 -8.57519 -6.08294 -4.07170 0.57877 0.67756 2.63459 2.90146 3.29817 3.37310 3.39312 3.41894 3.54119 4.04845 4.17145 4.21134 4.42705 4.47997 4.71750 4.82076 5.04112 5.11704 5.25804 5.42780 5.45455 5.52735 5.59931 5.62056 5.67384 5.84302 5.98045 6.30149 6.40625 6.41214 6.65287 6.75910 7.20067 7.33548 7.55728 7.74257 8.24950 8.48108 8.95381 9.53961 11.04921 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.036766 B = 0.002624 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.381033 B =10668.162179 C =10815.405535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.114 3.886 12 N -0.725 5.725 13 C 0.510 3.490 14 O -0.537 6.537 15 C -0.104 4.104 16 C -0.107 4.107 17 C -0.049 4.049 18 C -0.162 4.162 19 C 0.127 3.873 20 F -0.133 7.133 21 C -0.192 4.192 22 C 0.146 3.854 23 F -0.127 7.127 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.401 0.599 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.329 -16.305 -1.202 27.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.376 5.376 13 C 0.295 3.705 14 O -0.414 6.414 15 C -0.144 4.144 16 C -0.108 4.108 17 C -0.068 4.068 18 C -0.181 4.181 19 C 0.108 3.892 20 F -0.112 7.112 21 C -0.211 4.211 22 C 0.126 3.874 23 F -0.105 7.105 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.235 0.765 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 22.754 -15.491 -1.151 27.551 hybrid contribution 0.121 0.650 0.259 0.710 sum 22.875 -14.841 -0.892 27.282 Atomic orbital electron populations 1.69905 1.06318 1.26988 1.50953 1.25029 0.94748 0.99246 0.94447 0.86776 0.80412 0.83525 0.78594 1.20236 1.21351 1.18902 1.21090 0.89290 0.94510 1.51158 0.91000 1.19506 0.97289 0.91474 0.96663 1.21703 0.90568 1.01074 1.01757 1.21666 0.96169 0.81076 1.01963 1.46142 1.06505 1.10136 1.74795 1.20367 0.82720 0.90718 0.76715 1.90729 1.55305 1.46168 1.49231 1.20623 0.91562 0.96077 1.06146 1.19418 0.95284 1.03835 0.92266 1.20759 0.93098 0.95610 0.97286 1.21163 0.94737 1.04711 0.97501 1.17290 0.76994 1.01163 0.93804 1.91528 1.28583 1.93713 1.97329 1.20984 0.93167 1.07820 0.99146 1.17083 0.89128 0.99839 0.81321 1.91537 1.80301 1.93032 1.45662 0.92673 0.96311 0.96765 0.92091 0.92052 0.91789 0.91753 0.76540 0.87408 0.87053 0.83833 0.83904 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.59 9.66 -34.44 -0.33 -14.93 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.05 5.27 -26.74 -0.14 -2.19 16 11 C 0.11 1.83 5.67 -4.04 -0.02 1.81 16 12 N -0.72 -9.18 5.56 -60.29 -0.33 -9.52 16 13 C 0.51 6.68 7.82 -10.98 -0.09 6.60 16 14 O -0.54 -9.39 16.03 5.56 0.09 -9.30 16 15 C -0.10 -0.90 5.60 -29.03 -0.16 -1.06 16 16 C -0.11 -1.04 4.38 -104.55 -0.46 -1.50 16 17 C -0.05 -0.40 9.67 -39.60 -0.38 -0.78 16 18 C -0.16 -1.30 10.03 -39.50 -0.40 -1.70 16 19 C 0.13 1.19 7.30 -39.43 -0.29 0.90 16 20 F -0.13 -1.29 17.27 2.25 0.04 -1.25 16 21 C -0.19 -1.86 10.01 -39.45 -0.39 -2.26 16 22 C 0.15 1.58 7.24 -39.43 -0.29 1.30 16 23 F -0.13 -1.51 16.57 2.25 0.04 -1.48 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 26 H 0.01 0.32 7.57 -51.92 -0.39 -0.07 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.40 3.86 8.47 -40.82 -0.35 3.51 16 32 H 0.11 0.78 7.79 -51.93 -0.40 0.38 16 33 H 0.11 0.61 8.05 -51.93 -0.42 0.19 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 321.89 15.07 4.85 4.85 Total: -1.00 -33.67 321.89 -6.86 -40.53 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.48 Total: -1.63 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -3.16 Total: -12.36 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.44 Total: -36.35 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.08 Total: -2.73 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.67 -6.86 -40.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094817205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.136 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds