Wall clock time and date at job start Tue Mar 31 2020 06:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1 5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1 6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2 7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2 8 8 N 1.31518 * 120.00279 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99682 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47383 * 89.99703 * 9 7 5 11 11 H 1.48500 * 109.46982 * 209.99583 * 9 7 5 12 12 H 1.48499 * 109.47210 * 329.99420 * 9 7 5 13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1 14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3 17 17 C 1.50699 * 109.47192 * 179.97438 * 16 14 13 18 18 C 1.38418 * 120.02343 * 269.72335 * 17 16 14 19 19 F 1.35098 * 120.01570 * 359.97438 * 18 17 16 20 20 C 1.38478 * 119.97155 * 179.69979 * 18 17 16 21 21 C 1.38203 * 120.02530 * 0.60068 * 20 18 17 22 22 C 1.38209 * 120.05334 * 359.67762 * 21 20 18 23 23 C 1.38419 * 120.02366 * 90.00176 * 17 16 14 24 24 F 1.35099 * 120.01622 * 359.97438 * 23 17 16 25 25 H 1.09000 * 109.47158 * 300.00283 * 1 2 3 26 26 H 1.09004 * 109.47334 * 60.00501 * 1 2 3 27 27 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47158 * 239.99717 * 2 1 3 29 29 H 1.09004 * 109.47130 * 120.00013 * 2 1 3 30 30 H 0.96995 * 120.00082 * 180.02562 * 8 7 5 31 31 H 0.96995 * 120.00050 * 264.72646 * 13 3 2 32 32 H 1.09004 * 109.47043 * 299.99732 * 16 14 13 33 33 H 1.09000 * 109.46978 * 59.99653 * 16 14 13 34 34 H 1.08006 * 119.98722 * 180.32203 * 20 18 17 35 35 H 1.07998 * 119.97715 * 179.69961 * 21 20 18 36 36 H 1.07994 * 119.99291 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8812 1.3817 10 1 6.4417 2.1141 2.0847 11 1 6.4395 -0.3098 2.1549 12 1 6.6135 0.8414 0.0277 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0366 3.3385 -2.6545 17 6 -1.3613 3.8859 -2.5232 18 6 -2.4475 3.1027 -2.8737 19 9 -2.2549 1.8473 -3.3343 20 6 -3.7319 3.6045 -2.7468 21 6 -3.9288 4.8911 -2.2821 22 6 -2.8448 5.6761 -1.9372 23 6 -1.5598 5.1741 -2.0575 24 9 -0.5003 5.9414 -1.7198 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0604 2.9502 31 1 2.2734 2.1265 -1.9965 32 1 0.7281 4.1540 -2.8668 33 1 0.0680 2.6144 -3.4686 34 1 -4.5798 2.9918 -3.0153 35 1 -4.9307 5.2834 -2.1879 36 1 -2.9999 6.6811 -1.5738 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095050783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:15 Heat of formation + Delta-G solvation = -112.841557 kcal Electronic energy + Delta-G solvation = -22400.165943 eV Core-core repulsion = 18712.966284 eV Total energy + Delta-G solvation = -3687.199659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.96540 -48.95302 -39.40424 -38.40737 -35.09462 -32.92244 -32.30513 -30.86089 -30.33068 -27.97040 -26.52667 -23.16047 -22.90023 -22.23699 -20.21418 -19.29937 -18.16310 -17.36001 -17.19295 -16.23888 -15.92536 -15.58174 -15.43345 -15.22003 -15.13666 -14.63587 -14.40231 -14.24562 -13.52065 -13.04336 -12.79554 -12.68112 -12.63083 -12.01037 -11.91939 -11.61296 -11.39808 -11.25410 -11.21934 -10.94089 -10.82157 -10.30440 -10.15137 -9.60019 -9.22479 -9.02316 -8.78043 -8.74426 -8.47717 -7.80206 -6.10795 -4.20249 0.93437 0.94214 3.25473 3.26748 3.32251 3.33972 3.40522 3.89866 4.13948 4.37560 4.38135 4.49084 4.62590 4.73058 5.06787 5.20436 5.42482 5.48282 5.54671 5.80510 5.87201 5.88230 6.00129 6.05964 6.42233 6.49292 6.69134 6.71748 7.07435 7.22252 7.39606 7.47745 7.63872 7.75177 7.92136 8.20010 8.68107 8.79158 9.14971 9.47125 10.94565 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.027042 B = 0.004465 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.182608 B = 6269.708226 C = 6782.375176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.506 3.494 15 O -0.542 6.542 16 C -0.110 4.110 17 C -0.124 4.124 18 C 0.141 3.859 19 F -0.128 7.128 20 C -0.165 4.165 21 C -0.068 4.068 22 C -0.165 4.165 23 C 0.141 3.859 24 F -0.128 7.128 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 7.837 -11.607 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.421 6.421 16 C -0.150 4.150 17 C -0.127 4.127 18 C 0.121 3.879 19 F -0.107 7.107 20 C -0.184 4.184 21 C -0.086 4.086 22 C -0.184 4.184 23 C 0.122 3.878 24 F -0.106 7.106 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.262 7.667 -10.728 18.006 hybrid contribution 1.559 -0.161 -0.221 1.583 sum -10.702 7.507 -10.949 17.052 Atomic orbital electron populations 1.21832 0.98340 0.97997 1.01215 1.21928 0.92607 0.99802 1.02246 1.18788 0.94177 0.89171 0.80953 0.93363 1.21238 0.90717 1.38981 1.06307 0.92085 1.24885 0.98595 0.94795 0.95389 1.69898 1.35122 1.37655 1.09301 0.86456 0.84877 0.77631 0.78184 1.20576 1.21080 1.19849 1.46458 1.14359 1.55954 1.18713 1.20018 0.83045 0.79506 0.88463 1.90683 1.51386 1.59691 1.40300 1.20629 0.92991 1.02127 0.99274 1.19368 0.95621 0.93605 1.04062 1.17157 0.93074 0.79813 0.97849 1.91522 1.95962 1.37355 1.85827 1.21136 0.95491 0.97447 1.04369 1.20769 0.98925 0.92642 0.96228 1.21143 0.90670 1.02057 1.04570 1.17166 0.84026 0.88475 0.98179 1.91527 1.55288 1.74225 1.89573 0.93249 0.94259 0.95900 0.95039 0.88312 0.92580 0.77938 0.87705 0.87782 0.84177 0.84136 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.29 16 3 C 0.27 6.91 2.24 -69.08 -0.15 6.75 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.94 11.29 55.43 0.63 -24.32 16 9 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.71 -14.85 5.02 -54.93 -0.28 -15.12 16 14 C 0.51 10.20 6.39 -10.99 -0.07 10.12 16 15 O -0.54 -12.87 13.17 5.55 0.07 -12.80 16 16 C -0.11 -1.67 5.48 -29.04 -0.16 -1.83 16 17 C -0.12 -1.86 4.38 -104.49 -0.46 -2.32 16 18 C 0.14 1.97 7.24 -39.43 -0.29 1.68 16 19 F -0.13 -1.91 16.47 2.25 0.04 -1.88 16 20 C -0.17 -1.82 10.02 -39.51 -0.40 -2.21 16 21 C -0.07 -0.64 10.04 -39.60 -0.40 -1.04 16 22 C -0.17 -1.83 10.03 -39.50 -0.40 -2.22 16 23 C 0.14 1.99 7.24 -39.42 -0.29 1.71 16 24 F -0.13 -1.94 16.48 2.25 0.04 -1.91 16 25 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 26 H 0.04 0.89 5.65 -51.93 -0.29 0.59 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.39 7.03 8.54 -40.82 -0.35 6.68 16 32 H 0.10 1.39 7.64 -51.93 -0.40 0.99 16 33 H 0.10 1.36 7.63 -51.93 -0.40 0.97 16 34 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -31.28 311.68 -6.85 -38.13 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.20 Total: 5.77 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.83 Total: -8.29 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.35 Total: -39.44 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.07 Total: -3.78 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.28 -6.85 -38.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095050783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.712 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds