Wall clock time and date at job start Tue Mar 31 2020 06:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21274 * 120.00270 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99576 * 180.02562 * 14 13 3 17 17 C 1.50701 * 109.47109 * 179.97438 * 16 14 13 18 18 C 1.38416 * 120.02133 * 269.72121 * 17 16 14 19 19 F 1.35100 * 120.01555 * 0.02562 * 18 17 16 20 20 C 1.38478 * 119.97442 * 179.78927 * 18 17 16 21 21 C 1.38209 * 120.02142 * 0.48383 * 20 18 17 22 22 C 1.38209 * 120.05456 * 359.74570 * 21 20 18 23 23 C 1.38416 * 120.02606 * 89.99381 * 17 16 14 24 24 F 1.35096 * 120.01668 * 359.97438 * 23 17 16 25 25 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 27 27 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 28 28 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 29 29 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 30 30 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 31 31 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 32 32 H 1.09005 * 109.47081 * 299.98904 * 16 14 13 33 33 H 1.08997 * 109.47516 * 59.99675 * 16 14 13 34 34 H 1.07997 * 119.99175 * 180.23056 * 20 18 17 35 35 H 1.08002 * 119.97336 * 179.77100 * 21 20 18 36 36 H 1.07993 * 119.98731 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3392 2.6326 0.4343 16 6 0.0367 3.3384 2.6547 17 6 -1.3608 3.8867 2.5231 18 6 -1.5579 5.1772 2.0630 19 9 -0.4975 5.9458 1.7312 20 6 -2.8427 5.6786 1.9383 21 6 -3.9275 4.8943 2.2826 22 6 -3.7316 3.6073 2.7466 23 6 -2.4479 3.1022 2.8676 24 9 -2.2568 1.8442 3.3215 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8770 0.4827 -2.1133 31 1 2.2720 2.1230 1.9979 32 1 0.0680 2.6142 3.4688 33 1 0.7281 4.1539 2.8669 34 1 -2.9970 6.6841 1.5759 35 1 -4.9290 5.2874 2.1886 36 1 -4.5800 2.9953 3.0149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095050784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:18 Heat of formation + Delta-G solvation = -104.692787 kcal Electronic energy + Delta-G solvation = -22498.900216 eV Core-core repulsion = 18812.053915 eV Total energy + Delta-G solvation = -3686.846302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.04363 -49.01506 -39.56445 -38.55321 -35.38505 -33.03553 -32.33601 -31.42811 -30.39772 -28.19598 -26.95687 -22.97069 -22.92761 -22.32715 -20.63072 -19.57733 -18.23172 -17.43233 -17.37693 -16.28652 -16.16604 -15.65440 -15.58568 -15.49914 -15.28791 -14.81779 -14.46731 -14.23454 -13.67259 -13.26976 -13.00620 -12.86098 -12.73174 -12.19943 -12.06418 -11.92224 -11.80898 -11.50729 -11.40443 -11.04447 -10.87965 -10.61356 -9.91562 -9.57481 -9.32447 -9.20127 -8.85270 -8.84406 -8.74185 -8.05870 -6.20424 -4.22737 0.86121 0.87483 3.19634 3.21586 3.24864 3.36009 3.41600 3.82484 4.00318 4.31198 4.32410 4.37338 4.55246 4.66100 5.00226 5.13203 5.34323 5.38041 5.42201 5.71885 5.79759 5.80689 5.92835 5.98859 5.99675 6.04524 6.20182 6.64190 6.67834 6.71442 6.86145 6.97981 7.27870 7.31432 7.52658 8.15332 8.53139 8.76521 8.94115 9.40633 10.91664 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.004812 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.403482 B = 5817.781316 C = 6207.614420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.260 1.260 12 H -0.294 1.294 13 N -0.699 5.699 14 C 0.508 3.492 15 O -0.543 6.543 16 C -0.109 4.109 17 C -0.126 4.126 18 C 0.142 3.858 19 F -0.127 7.127 20 C -0.165 4.165 21 C -0.067 4.067 22 C -0.166 4.166 23 C 0.141 3.859 24 F -0.128 7.128 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.267 0.733 31 H 0.395 0.605 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.018 6.883 10.364 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.185 1.185 12 H -0.222 1.222 13 N -0.347 5.347 14 C 0.292 3.708 15 O -0.422 6.422 16 C -0.149 4.149 17 C -0.129 4.129 18 C 0.122 3.878 19 F -0.105 7.105 20 C -0.184 4.184 21 C -0.085 4.085 22 C -0.185 4.185 23 C 0.121 3.879 24 F -0.107 7.107 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.229 0.771 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.326 6.777 9.565 20.919 hybrid contribution 0.216 -0.635 -0.397 0.779 sum -17.110 6.142 9.168 20.360 Atomic orbital electron populations 1.21867 0.96931 0.99007 1.02244 1.22286 0.94353 0.99957 1.01090 1.19152 0.95613 0.88479 0.82815 0.93347 1.21055 0.88599 1.39761 1.07859 0.90170 1.24828 0.94855 0.95137 0.97648 1.69868 1.08680 1.44550 1.29820 0.86908 0.80983 0.79961 0.80916 1.20227 1.18489 1.22155 1.46127 1.14654 1.55888 1.18048 1.20086 0.82764 0.79279 0.88657 1.90677 1.51460 1.59718 1.40345 1.20601 0.93126 1.02272 0.98907 1.19353 0.95526 0.93598 1.04380 1.17171 0.84033 0.88417 0.98157 1.91536 1.55174 1.74149 1.89681 1.21154 0.90655 1.02095 1.04504 1.20785 0.98959 0.92644 0.96089 1.21141 0.95511 0.97435 1.04377 1.17152 0.93074 0.79725 0.97917 1.91521 1.95981 1.37116 1.86060 0.95000 0.92915 0.92961 0.92797 0.92280 0.92292 0.77137 0.87550 0.87412 0.84110 0.84099 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.52 37.16 0.32 -2.66 16 2 C -0.14 -3.13 5.11 -26.73 -0.14 -3.27 16 3 C 0.24 5.83 1.83 -69.08 -0.13 5.70 16 4 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 5 C -0.53 -14.55 9.31 -34.44 -0.32 -14.87 16 6 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 7 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 9 Si 0.88 22.02 24.41 -169.99 -4.15 17.87 16 10 H -0.28 -6.66 6.83 56.52 0.39 -6.27 16 11 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 N -0.70 -13.95 5.02 -54.93 -0.28 -14.22 16 14 C 0.51 9.62 6.39 -10.98 -0.07 9.55 16 15 O -0.54 -12.06 13.17 5.56 0.07 -11.99 16 16 C -0.11 -1.55 5.48 -29.03 -0.16 -1.71 16 17 C -0.13 -1.78 4.38 -104.49 -0.46 -2.24 16 18 C 0.14 1.90 7.24 -39.43 -0.29 1.62 16 19 F -0.13 -1.85 16.47 2.25 0.04 -1.82 16 20 C -0.17 -1.72 10.03 -39.50 -0.40 -2.11 16 21 C -0.07 -0.59 10.04 -39.60 -0.40 -0.99 16 22 C -0.17 -1.70 10.03 -39.50 -0.40 -2.09 16 23 C 0.14 1.85 7.24 -39.43 -0.29 1.57 16 24 F -0.13 -1.80 16.48 2.25 0.04 -1.76 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 1.08 5.65 -51.93 -0.29 0.79 16 27 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 28 H 0.05 1.28 3.22 -51.93 -0.17 1.11 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.40 6.89 8.54 -40.82 -0.35 6.54 16 32 H 0.11 1.29 7.64 -51.93 -0.40 0.89 16 33 H 0.11 1.35 7.63 -51.93 -0.40 0.96 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -32.29 304.93 -5.79 -38.08 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.07 Total: 4.44 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.81 Total: -9.38 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.50 Total: -40.04 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.07 Total: -11.99 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.07 Total: -3.58 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.15 Total: 17.87 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.29 -5.79 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095050784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.615 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds