Wall clock time and date at job start Tue Mar 31 2020 06:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 H 1.08997 * 109.47563 * 54.99885 * 3 2 1 5 5 C 1.50695 * 109.47448 * 175.00253 * 3 2 1 6 6 H 1.08004 * 120.00546 * 120.27461 * 5 3 2 7 7 C 1.37885 * 119.99721 * 299.99712 * 5 3 2 8 8 N 1.31516 * 119.99913 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46506 * 109.47094 * 295.00136 * 3 2 1 14 14 C 1.34767 * 120.00042 * 84.99823 * 13 3 2 15 15 O 1.21284 * 120.00486 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99999 * 180.02562 * 14 13 3 17 17 C 1.50699 * 109.47217 * 180.02562 * 16 14 13 18 18 C 1.38262 * 119.96022 * 269.72162 * 17 16 14 19 19 C 1.38216 * 120.06914 * 179.76574 * 18 17 16 20 20 C 1.38417 * 119.99617 * 0.50770 * 19 18 17 21 21 F 1.35102 * 120.03245 * 179.72065 * 20 19 18 22 22 C 1.38648 * 119.93094 * 359.74971 * 20 19 18 23 23 F 1.35103 * 120.03478 * 179.97438 * 22 20 19 24 24 C 1.38210 * 119.96779 * 89.99770 * 17 16 14 25 25 H 1.08997 * 109.46959 * 60.00091 * 1 2 3 26 26 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47014 * 300.00240 * 1 2 3 28 28 H 1.09001 * 109.47014 * 239.99760 * 2 1 3 29 29 H 1.09007 * 109.47025 * 119.99887 * 2 1 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 0.97000 * 120.00021 * 265.00203 * 13 3 2 32 32 H 1.09004 * 109.46471 * 299.99552 * 16 14 13 33 33 H 1.08997 * 109.47274 * 59.99659 * 16 14 13 34 34 H 1.07998 * 119.96586 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.00026 * 180.25513 * 19 18 17 36 36 H 1.07997 * 119.99944 * 359.95298 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6502 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0963 0.1089 2.5700 10 1 2.8755 -1.3272 2.2634 11 1 3.7937 0.2348 3.8751 12 1 1.7877 0.8073 2.6386 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3393 2.6327 -0.4342 16 6 0.0363 3.3376 -2.6549 17 6 -1.3611 3.8862 -2.5231 18 6 -2.4460 3.1034 -2.8721 19 6 -3.7288 3.6026 -2.7476 20 6 -3.9279 4.8912 -2.2830 21 9 -5.1812 5.3818 -2.1663 22 6 -2.8397 5.6780 -1.9381 23 9 -3.0315 6.9362 -1.4849 24 6 -1.5565 5.1733 -2.0590 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 5.8771 0.4810 2.1124 31 1 2.2719 2.1231 -1.9978 32 1 0.7277 4.1530 -2.8679 33 1 0.0674 2.6130 -3.4685 34 1 -2.2911 2.0993 -3.2385 35 1 -4.5756 2.9886 -3.0166 36 1 -0.7081 5.7851 -1.7902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095050785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:22 Heat of formation + Delta-G solvation = -106.580181 kcal Electronic energy + Delta-G solvation = -21890.543827 eV Core-core repulsion = 18203.615682 eV Total energy + Delta-G solvation = -3686.928145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.53870 -48.61651 -39.87755 -38.55778 -35.40396 -32.80706 -32.33315 -31.43819 -30.90867 -28.08747 -26.87855 -23.41367 -22.87679 -22.23029 -20.69050 -19.63877 -18.05993 -17.39228 -17.28720 -17.01851 -16.38486 -15.92079 -15.78331 -15.03299 -14.94241 -14.73161 -14.55449 -14.17067 -13.99589 -13.42207 -13.27738 -13.01511 -12.58314 -12.22965 -12.09702 -11.95556 -11.81143 -11.59588 -11.35869 -11.10517 -10.93457 -10.66570 -9.96790 -9.62006 -9.33571 -9.25075 -9.13415 -8.79631 -8.68190 -8.12513 -6.25046 -4.27828 0.78445 0.89170 3.14454 3.17053 3.20687 3.33045 3.37597 3.67421 3.98241 4.22108 4.28080 4.37662 4.48366 4.84895 4.96955 5.08564 5.24282 5.32614 5.41327 5.61100 5.70058 5.79582 5.86615 5.92022 5.97992 6.13498 6.23191 6.59967 6.62458 6.65861 6.79878 6.90613 7.21663 7.25357 7.47137 8.09786 8.47141 8.71446 8.87900 9.35833 10.86969 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029517 B = 0.003853 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.362853 B = 7266.142997 C = 7414.757283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.700 5.700 14 C 0.503 3.497 15 O -0.542 6.542 16 C -0.109 4.109 17 C -0.034 4.034 18 C -0.087 4.087 19 C -0.124 4.124 20 C 0.059 3.941 21 F -0.133 7.133 22 C 0.069 3.931 23 F -0.131 7.131 24 C -0.112 4.112 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.268 0.732 31 H 0.395 0.605 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.281 4.558 -11.108 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.348 5.348 14 C 0.287 3.713 15 O -0.421 6.421 16 C -0.149 4.149 17 C -0.035 4.035 18 C -0.105 4.105 19 C -0.143 4.143 20 C 0.039 3.961 21 F -0.112 7.112 22 C 0.049 3.951 23 F -0.110 7.110 24 C -0.130 4.130 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.229 0.771 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.705 4.547 -10.280 18.509 hybrid contribution -0.301 -0.190 0.580 0.681 sum -15.006 4.357 -9.699 18.392 Atomic orbital electron populations 1.21869 0.96939 0.98994 1.02237 1.22285 0.94334 0.99974 1.01120 1.19146 0.95602 0.88485 0.82851 0.93340 1.21051 0.88628 1.39806 1.07967 0.90183 1.24836 0.94854 0.95130 0.97659 1.69866 1.08696 1.44423 1.29847 0.86906 0.80965 0.79949 0.80941 1.20231 1.22150 1.18487 1.46166 1.14750 1.55881 1.18038 1.20197 0.82732 0.79472 0.88883 1.90711 1.51396 1.59542 1.40406 1.20780 0.93711 1.02078 0.98333 1.19251 0.95082 0.92574 0.96605 1.20947 0.90771 0.99937 0.98834 1.21008 0.99014 0.93251 1.00986 1.17671 0.78688 0.93966 1.05762 1.91510 1.37660 1.87944 1.94061 1.17602 0.93479 0.80898 1.03168 1.91521 1.95909 1.36824 1.86709 1.20942 0.95159 0.96678 1.00269 0.92943 0.95020 0.92910 0.92291 0.92810 0.92251 0.77132 0.87679 0.87649 0.84316 0.83784 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.52 37.16 0.32 -2.41 16 2 C -0.14 -2.94 5.11 -26.73 -0.14 -3.07 16 3 C 0.24 5.46 1.83 -69.08 -0.13 5.33 16 4 H 0.05 1.23 6.64 -51.93 -0.34 0.88 16 5 C -0.54 -13.97 9.31 -34.44 -0.32 -14.29 16 6 H 0.08 2.19 7.98 -52.48 -0.42 1.77 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.92 13.96 55.43 0.77 -25.14 16 9 Si 0.88 21.36 24.41 -169.99 -4.15 17.21 16 10 H -0.28 -6.46 6.83 56.52 0.39 -6.07 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.26 -6.26 6.53 56.52 0.37 -5.89 16 13 N -0.70 -12.44 5.02 -54.93 -0.28 -12.72 16 14 C 0.50 8.17 6.39 -10.99 -0.07 8.10 16 15 O -0.54 -10.83 13.17 5.55 0.07 -10.76 16 16 C -0.11 -1.17 5.83 -29.03 -0.17 -1.34 16 17 C -0.03 -0.40 4.37 -104.62 -0.46 -0.85 16 18 C -0.09 -0.90 9.70 -39.58 -0.38 -1.28 16 19 C -0.12 -1.28 10.02 -39.52 -0.40 -1.68 16 20 C 0.06 0.73 7.31 -39.36 -0.29 0.45 16 21 F -0.13 -1.73 17.18 2.25 0.04 -1.69 16 22 C 0.07 0.89 7.31 -39.37 -0.29 0.61 16 23 F -0.13 -1.81 17.18 2.25 0.04 -1.77 16 24 C -0.11 -1.35 9.68 -39.53 -0.38 -1.73 16 25 H 0.05 0.95 5.65 -51.93 -0.29 0.65 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.09 7.85 -51.93 -0.41 0.68 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.22 3.21 -51.93 -0.17 1.05 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.40 6.04 8.54 -40.82 -0.35 5.69 16 32 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.11 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 307.01 15.07 4.63 4.63 Total: -1.00 -31.20 307.01 -5.79 -36.99 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.12 Total: 3.38 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -2.80 Total: -10.13 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.50 Total: -37.86 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.08 Total: -3.47 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.15 Total: 17.21 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.20 -5.79 -36.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095050785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.586 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds