Wall clock time and date at job start Tue Mar 31 2020 06:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46761 * 2 1 4 4 H 1.09005 * 109.47058 * 55.00182 * 3 2 1 5 5 C 1.50697 * 109.47081 * 175.00328 * 3 2 1 6 6 H 1.07997 * 120.00668 * 120.00099 * 5 3 2 7 7 C 1.37879 * 119.99892 * 300.00058 * 5 3 2 8 8 N 1.31518 * 120.00106 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00088 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46621 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47131 * 120.00171 * 9 7 5 12 12 H 1.48501 * 109.47159 * 240.00099 * 9 7 5 13 13 N 1.46501 * 109.47138 * 295.00252 * 3 2 1 14 14 C 1.34774 * 120.00072 * 85.00508 * 13 3 2 15 15 O 1.21287 * 119.99781 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00005 * 179.97438 * 14 13 3 17 17 C 1.50707 * 109.47006 * 179.97438 * 16 14 13 18 18 C 1.38234 * 119.98427 * 100.00348 * 17 16 14 19 19 C 1.38182 * 120.04582 * 180.25726 * 18 17 16 20 20 C 1.38491 * 120.02870 * 359.44169 * 19 18 17 21 21 F 1.35101 * 120.01825 * 180.28454 * 20 19 18 22 22 C 1.38400 * 119.97385 * 0.55324 * 20 19 18 23 23 C 1.38443 * 119.98681 * 279.97864 * 17 16 14 24 24 F 1.35098 * 120.01594 * 0.04296 * 23 17 16 25 25 H 1.09000 * 109.46773 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46979 * 299.99531 * 1 2 3 27 27 H 1.08998 * 109.47265 * 59.99818 * 1 2 3 28 28 H 1.09000 * 109.46979 * 240.00469 * 2 1 3 29 29 H 1.08998 * 109.47265 * 120.00182 * 2 1 3 30 30 H 0.97004 * 119.99891 * 179.97438 * 8 7 5 31 31 H 0.96999 * 119.99620 * 264.99417 * 13 3 2 32 32 H 1.08998 * 109.47014 * 59.99743 * 16 14 13 33 33 H 1.08999 * 109.47453 * 299.99387 * 16 14 13 34 34 H 1.08002 * 119.97328 * 359.97140 * 18 17 16 35 35 H 1.08008 * 119.98503 * 179.70400 * 19 18 17 36 36 H 1.08002 * 120.02913 * 179.74644 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5418 1.4444 0.1237 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8815 1.3817 10 1 6.5986 1.5465 0.1940 11 1 6.3990 1.6168 2.6101 12 1 6.4972 -0.5173 1.4627 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6645 -1.3669 15 8 -0.3397 2.6320 -0.4342 16 6 0.0365 3.3387 -2.6543 17 6 -1.3616 3.8860 -2.5229 18 6 -1.5557 5.2289 -2.2586 19 6 -2.8369 5.7310 -2.1326 20 6 -3.9281 4.8916 -2.2824 21 9 -5.1808 5.3839 -2.1649 22 6 -3.7350 3.5470 -2.5472 23 6 -2.4508 3.0438 -2.6675 24 9 -2.2607 1.7314 -2.9254 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8294 -0.0610 2.9499 31 1 2.2718 2.1233 -1.9977 32 1 0.0678 2.6146 -3.4684 33 1 0.7278 4.1543 -2.8665 34 1 -0.7053 5.8851 -2.1459 35 1 -2.9874 6.7795 -1.9213 36 1 -4.5853 2.8907 -2.6602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095066782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:30 Heat of formation + Delta-G solvation = -114.282700 kcal Electronic energy + Delta-G solvation = -22099.037624 eV Core-core repulsion = 18411.775473 eV Total energy + Delta-G solvation = -3687.262152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.08134 -48.92491 -39.54550 -38.37119 -35.09004 -32.73088 -32.27707 -30.93699 -30.75254 -27.75226 -26.42113 -23.28302 -23.10820 -22.11045 -20.23085 -19.32169 -18.25379 -17.30662 -17.16564 -16.19223 -15.97224 -15.67084 -15.50233 -15.19905 -15.08167 -14.71326 -14.39896 -14.16826 -13.80439 -13.21241 -12.96465 -12.68682 -12.35875 -11.97513 -11.83023 -11.68250 -11.46997 -11.25694 -11.23953 -10.96288 -10.83746 -10.31369 -10.16690 -9.61636 -9.22969 -9.05037 -9.00338 -8.58675 -8.50001 -7.82440 -6.13267 -4.22847 0.88897 0.96665 3.22431 3.25079 3.30623 3.32826 3.38123 3.83317 4.13495 4.36165 4.39215 4.49815 4.58508 4.75137 5.04448 5.18091 5.41112 5.51268 5.53411 5.72844 5.77968 5.91465 5.95592 6.17490 6.41571 6.48747 6.68352 6.70385 7.06430 7.21212 7.37954 7.45682 7.61890 7.73058 7.89835 8.18145 8.65795 8.76989 9.12878 9.44757 10.91995 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032560 B = 0.003862 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.743930 B = 7248.143661 C = 7539.415045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.708 5.708 14 C 0.502 3.498 15 O -0.542 6.542 16 C -0.108 4.108 17 C -0.098 4.098 18 C -0.053 4.053 19 C -0.164 4.164 20 C 0.122 3.878 21 F -0.136 7.136 22 C -0.193 4.193 23 C 0.149 3.851 24 F -0.126 7.126 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.040 0.960 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 8.112 -11.638 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.287 3.713 15 O -0.420 6.420 16 C -0.149 4.149 17 C -0.099 4.099 18 C -0.071 4.071 19 C -0.182 4.182 20 C 0.102 3.898 21 F -0.114 7.114 22 C -0.212 4.212 23 C 0.129 3.871 24 F -0.104 7.104 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.988 7.937 -10.759 16.689 hybrid contribution 1.058 -0.280 -0.204 1.114 sum -8.930 7.657 -10.963 16.080 Atomic orbital electron populations 1.21835 0.98291 0.98030 1.01271 1.21930 0.92636 0.99814 1.02216 1.18788 0.94156 0.89191 0.80990 0.93339 1.21273 0.90736 1.38974 1.06268 0.92037 1.24894 0.98584 0.94821 0.95403 1.69911 1.35029 1.37625 1.09336 0.86411 0.84904 0.77785 0.78097 1.19748 1.20896 1.20884 1.46472 1.14519 1.55979 1.18595 1.20098 0.82979 0.79623 0.88637 1.90698 1.51277 1.59648 1.40377 1.20705 0.93266 1.02030 0.98851 1.19501 0.94136 0.93768 1.02513 1.20761 0.96876 0.93869 0.95580 1.21114 0.91525 1.00760 1.04849 1.17256 0.79532 0.91554 1.01444 1.91510 1.38524 1.87973 1.93439 1.20954 0.97311 0.95255 1.07695 1.17076 0.92697 0.78233 0.99100 1.91536 1.95891 1.32115 1.90876 0.95939 0.93281 0.94118 0.95070 0.88361 0.92621 0.77958 0.88108 0.87741 0.83938 0.84141 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.69 2.24 -69.08 -0.15 6.53 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.56 11.30 55.43 0.63 -23.93 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.71 -14.06 5.02 -54.93 -0.28 -14.34 16 14 C 0.50 9.42 6.38 -10.99 -0.07 9.35 16 15 O -0.54 -12.25 13.09 5.55 0.07 -12.18 16 16 C -0.11 -1.43 5.55 -29.03 -0.16 -1.59 16 17 C -0.10 -1.31 4.43 -104.54 -0.46 -1.78 16 18 C -0.05 -0.59 9.66 -39.60 -0.38 -0.98 16 19 C -0.16 -1.76 10.02 -39.51 -0.40 -2.15 16 20 C 0.12 1.46 7.30 -39.43 -0.29 1.17 16 21 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 22 C -0.19 -2.43 10.01 -39.44 -0.39 -2.82 16 23 C 0.15 2.11 7.13 -39.43 -0.28 1.83 16 24 F -0.13 -1.96 16.66 2.25 0.04 -1.92 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 27 H 0.04 0.90 5.64 -51.93 -0.29 0.61 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.39 6.58 8.54 -40.82 -0.35 6.23 16 32 H 0.10 1.18 7.94 -51.93 -0.41 0.76 16 33 H 0.10 1.06 8.00 -51.93 -0.42 0.64 16 34 H 0.14 1.26 8.04 -52.49 -0.42 0.84 16 35 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -30.44 312.89 -6.86 -37.30 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.23 Total: 5.57 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.82 Total: -8.96 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.35 Total: -38.27 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.18 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.08 Total: -3.51 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.44 -6.86 -37.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095066782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.986 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds