Wall clock time and date at job start Tue Mar 31 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38233 * 119.84023 * 2 1 4 4 C 1.38275 * 120.14695 * 179.97438 * 3 2 1 5 5 F 1.35096 * 120.08464 * 179.97438 * 4 3 2 6 6 C 1.39846 * 119.82860 * 0.02562 * 4 3 2 7 7 C 1.47695 * 120.15314 * 179.97438 * 6 4 3 8 8 O 1.21572 * 119.99729 * 310.96889 * 7 6 4 9 9 N 1.34774 * 120.00505 * 130.97589 * 7 6 4 10 10 C 1.46506 * 119.99861 * 4.44330 * 9 7 6 11 11 C 1.46494 * 120.00524 * 184.45069 * 9 7 6 12 12 H 1.09007 * 109.46907 * 359.97438 * 11 9 7 13 13 C 1.52994 * 109.47577 * 119.99379 * 11 9 7 14 14 C 1.50701 * 109.47060 * 240.00103 * 11 9 7 15 15 H 1.08001 * 120.00198 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99941 * 180.02562 * 14 11 9 17 17 N 1.31508 * 120.00490 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99882 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47134 * 59.99468 * 18 16 14 20 20 H 1.48500 * 109.47118 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47020 * 299.99502 * 18 16 14 22 22 C 1.39621 * 119.69330 * 0.02562 * 6 4 3 23 23 C 1.38106 * 119.84813 * 359.97438 * 22 6 4 24 24 F 1.35110 * 119.91563 * 180.02562 * 23 22 6 25 25 H 1.09000 * 109.47384 * 90.00395 * 1 2 3 26 26 H 1.09002 * 109.46445 * 209.99719 * 1 2 3 27 27 H 1.08997 * 109.47331 * 329.99715 * 1 2 3 28 28 H 1.07995 * 119.92988 * 359.72121 * 3 2 1 29 29 H 1.09002 * 109.46901 * 93.09666 * 10 9 7 30 30 H 1.08991 * 109.47598 * 213.10152 * 10 9 7 31 31 H 1.09005 * 109.46997 * 333.10294 * 10 9 7 32 32 H 1.08992 * 109.47414 * 300.00306 * 13 11 9 33 33 H 1.09007 * 109.46775 * 60.00127 * 13 11 9 34 34 H 1.09001 * 109.47335 * 179.97438 * 13 11 9 35 35 H 0.96998 * 120.00371 * 180.02562 * 17 16 14 36 36 H 1.08003 * 120.07360 * 180.02562 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1991 0.0000 4 6 3.5775 1.2065 0.0005 5 9 4.2485 2.3790 0.0000 6 6 4.2796 -0.0030 0.0005 7 6 5.7566 -0.0035 0.0005 8 8 6.3646 0.6867 -0.7945 9 7 6.4303 -0.7690 0.8817 10 6 5.7009 -1.6738 1.7737 11 6 7.8920 -0.6964 0.9477 12 1 8.2534 0.0248 0.2146 13 6 8.3180 -0.2562 2.3496 14 6 8.4764 -2.0527 0.6477 15 1 7.8242 -2.8856 0.4301 16 6 9.8436 -2.2305 0.6521 17 7 10.6378 -1.2166 0.9175 18 14 10.5679 -3.9119 0.2809 19 1 10.1548 -4.3395 -1.0799 20 1 12.0496 -3.8383 0.3477 21 1 10.0752 -4.8946 1.2794 22 6 3.5779 -1.2101 -0.0006 23 6 2.1969 -1.2023 -0.0011 24 9 1.5165 -2.3695 -0.0016 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6511 2.1321 -0.0046 29 1 5.6366 -2.6611 1.3164 30 1 6.2267 -1.7477 2.7255 31 1 4.6964 -1.2856 1.9428 32 1 7.8954 0.7248 2.5666 33 1 7.9566 -0.9776 3.0825 34 1 9.4056 -0.2026 2.3988 35 1 11.5997 -1.3416 0.9202 36 1 4.1139 -2.1477 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134276045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:40 Heat of formation + Delta-G solvation = -97.718623 kcal Electronic energy + Delta-G solvation = -22392.753930 eV Core-core repulsion = 18706.210051 eV Total energy + Delta-G solvation = -3686.543879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.06134 -48.86185 -39.85522 -38.20595 -35.42931 -33.53124 -32.51966 -30.37619 -29.51180 -27.57100 -26.25020 -25.24089 -23.24776 -22.85553 -21.08414 -19.10600 -17.57757 -17.31432 -17.09204 -16.42583 -16.18911 -15.79667 -15.37189 -15.27560 -14.56776 -14.43468 -14.21457 -14.13085 -13.60156 -13.38252 -13.06625 -12.85732 -12.61526 -12.31965 -12.22207 -11.92124 -11.59654 -11.48202 -11.27837 -11.08380 -10.83949 -10.75391 -10.30780 -10.19176 -9.31547 -9.23866 -9.06757 -8.62058 -8.45222 -7.69556 -6.09383 -4.17888 0.61384 0.83831 2.90604 3.27206 3.32490 3.33994 3.42735 3.68697 4.01259 4.06382 4.35680 4.40070 4.47875 4.81917 4.91720 5.16121 5.21719 5.26353 5.36720 5.60582 5.64748 5.68965 5.84132 5.85765 5.94184 5.99762 6.22522 6.58265 6.72496 6.78059 7.00098 7.33326 7.44434 7.67083 7.96311 8.13783 8.40169 8.74358 8.91142 9.48396 10.96000 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.004770 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.780614 B = 5868.558040 C = 6586.582918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.136 4.136 4 C 0.140 3.860 5 F -0.119 7.119 6 C -0.126 4.126 7 C 0.545 3.455 8 O -0.531 6.531 9 N -0.580 5.580 10 C 0.079 3.921 11 C 0.258 3.742 12 H 0.065 0.935 13 C -0.148 4.148 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.091 4.091 23 C 0.079 3.921 24 F -0.133 7.133 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.149 0.851 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.012 0.988 33 H 0.031 0.969 34 H 0.096 0.904 35 H 0.265 0.735 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.095 1.231 1.697 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.155 4.155 4 C 0.119 3.881 5 F -0.097 7.097 6 C -0.130 4.130 7 C 0.330 3.670 8 O -0.409 6.409 9 N -0.311 5.311 10 C -0.064 4.064 11 C 0.158 3.842 12 H 0.083 0.917 13 C -0.206 4.206 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.110 4.110 23 C 0.060 3.940 24 F -0.111 7.111 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.167 0.833 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.512 1.632 1.322 18.630 hybrid contribution 0.474 -1.043 -0.130 1.153 sum -18.038 0.588 1.192 18.087 Atomic orbital electron populations 1.20781 0.89296 1.03784 1.03289 1.19818 0.97337 0.90957 1.00046 1.20794 0.91567 0.98953 1.04192 1.17602 0.89569 0.80866 1.00065 1.91579 1.80482 1.44543 1.93089 1.20171 0.95902 0.92136 1.04837 1.17878 0.85262 0.81471 0.82372 1.90796 1.68739 1.42775 1.38585 1.48206 1.09795 1.38452 1.34629 1.21794 0.95674 0.93578 0.95389 1.19029 0.71769 0.98203 0.95175 0.91681 1.22106 1.04719 0.96288 0.97509 1.21241 0.91727 0.94884 1.48725 0.92258 1.24885 0.96854 0.97113 0.94834 1.69859 1.04037 1.30272 1.48349 0.86532 0.77937 0.83843 0.78939 1.20219 1.21133 1.20202 1.21312 0.92117 0.98992 0.98621 1.17284 0.89446 0.81291 1.05990 1.91504 1.79747 1.45793 1.94071 0.90234 0.90652 0.90536 0.83320 0.92793 0.90638 0.92533 0.96856 0.94965 0.88576 0.92550 0.82804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 9.82 36.00 0.35 -0.46 16 2 C -0.08 -0.83 5.89 -104.49 -0.62 -1.45 16 3 C -0.14 -1.52 9.66 -39.57 -0.38 -1.90 16 4 C 0.14 2.12 7.26 -38.97 -0.28 1.83 16 5 F -0.12 -2.05 16.51 2.25 0.04 -2.01 16 6 C -0.13 -2.11 4.90 -104.92 -0.51 -2.63 16 7 C 0.55 11.80 7.01 -12.40 -0.09 11.71 16 8 O -0.53 -13.69 15.98 5.30 0.08 -13.61 16 9 N -0.58 -12.55 2.75 -176.43 -0.49 -13.03 16 10 C 0.08 1.34 8.35 59.85 0.50 1.84 16 11 C 0.26 6.61 2.63 -69.09 -0.18 6.42 16 12 H 0.07 1.93 6.91 -51.92 -0.36 1.58 16 13 C -0.15 -3.53 8.94 37.15 0.33 -3.19 16 14 C -0.53 -14.17 8.37 -34.44 -0.29 -14.46 16 15 H 0.06 1.56 7.56 -52.49 -0.40 1.16 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 17 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 18 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 C -0.09 -1.27 7.59 -39.11 -0.30 -1.56 16 23 C 0.08 0.95 7.23 -39.49 -0.29 0.67 16 24 F -0.13 -1.56 16.45 2.25 0.04 -1.52 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.52 7.63 -51.93 -0.40 0.12 16 27 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.05 0.86 7.47 -51.93 -0.39 0.47 16 30 H 0.07 1.27 6.44 -51.93 -0.33 0.93 16 31 H 0.06 0.79 5.67 -51.93 -0.29 0.50 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.03 0.70 6.68 -51.93 -0.35 0.35 16 34 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.15 2.06 6.57 -52.48 -0.34 1.71 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -31.19 308.54 -5.91 -37.10 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.00 Total: -1.63 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.84 Total: -1.49 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.14 Total: -37.40 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.07 Total: -3.54 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.19 -5.91 -37.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134276045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.622 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds