Wall clock time and date at job start Tue Mar 31 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38233 * 119.84023 * 2 1 4 4 C 1.38275 * 120.14695 * 179.97438 * 3 2 1 5 5 F 1.35096 * 120.08464 * 179.97438 * 4 3 2 6 6 C 1.39846 * 119.82860 * 0.02562 * 4 3 2 7 7 C 1.47695 * 120.15314 * 179.97438 * 6 4 3 8 8 O 1.21572 * 119.99729 * 310.96889 * 7 6 4 9 9 N 1.34774 * 120.00505 * 130.97589 * 7 6 4 10 10 C 1.46506 * 119.99861 * 4.44330 * 9 7 6 11 11 C 1.46494 * 120.00524 * 184.45069 * 9 7 6 12 12 H 1.09007 * 109.46907 * 359.97438 * 11 9 7 13 13 C 1.52994 * 109.47577 * 119.99379 * 11 9 7 14 14 C 1.50701 * 109.47060 * 240.00103 * 11 9 7 15 15 H 1.08001 * 120.00198 * 359.97438 * 14 11 9 16 16 C 1.37877 * 119.99941 * 180.02562 * 14 11 9 17 17 N 1.31508 * 120.00490 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99882 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47134 * 59.99468 * 18 16 14 20 20 H 1.48500 * 109.47118 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47020 * 299.99502 * 18 16 14 22 22 C 1.39621 * 119.69330 * 0.02562 * 6 4 3 23 23 C 1.38106 * 119.84813 * 359.97438 * 22 6 4 24 24 F 1.35110 * 119.91563 * 180.02562 * 23 22 6 25 25 H 1.09000 * 109.47384 * 90.00395 * 1 2 3 26 26 H 1.09002 * 109.46445 * 209.99719 * 1 2 3 27 27 H 1.08997 * 109.47331 * 329.99715 * 1 2 3 28 28 H 1.07995 * 119.92988 * 359.72121 * 3 2 1 29 29 H 1.09002 * 109.46901 * 93.09666 * 10 9 7 30 30 H 1.08991 * 109.47598 * 213.10152 * 10 9 7 31 31 H 1.09005 * 109.46997 * 333.10294 * 10 9 7 32 32 H 1.08992 * 109.47414 * 300.00306 * 13 11 9 33 33 H 1.09007 * 109.46775 * 60.00127 * 13 11 9 34 34 H 1.09001 * 109.47335 * 179.97438 * 13 11 9 35 35 H 0.96998 * 120.00371 * 180.02562 * 17 16 14 36 36 H 1.08003 * 120.07360 * 180.02562 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1991 0.0000 4 6 3.5775 1.2065 0.0005 5 9 4.2485 2.3790 0.0000 6 6 4.2796 -0.0030 0.0005 7 6 5.7566 -0.0035 0.0005 8 8 6.3646 0.6867 -0.7945 9 7 6.4303 -0.7690 0.8817 10 6 5.7009 -1.6738 1.7737 11 6 7.8920 -0.6964 0.9477 12 1 8.2534 0.0248 0.2146 13 6 8.3180 -0.2562 2.3496 14 6 8.4764 -2.0527 0.6477 15 1 7.8242 -2.8856 0.4301 16 6 9.8436 -2.2305 0.6521 17 7 10.6378 -1.2166 0.9175 18 14 10.5679 -3.9119 0.2809 19 1 10.1548 -4.3395 -1.0799 20 1 12.0496 -3.8383 0.3477 21 1 10.0752 -4.8946 1.2794 22 6 3.5779 -1.2101 -0.0006 23 6 2.1969 -1.2023 -0.0011 24 9 1.5165 -2.3695 -0.0016 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6511 2.1321 -0.0046 29 1 5.6366 -2.6611 1.3164 30 1 6.2267 -1.7477 2.7255 31 1 4.6964 -1.2856 1.9428 32 1 7.8954 0.7248 2.5666 33 1 7.9566 -0.9776 3.0825 34 1 9.4056 -0.2026 2.3988 35 1 11.5997 -1.3416 0.9202 36 1 4.1139 -2.1477 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134276045.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:39 Heat of formation + Delta-G solvation = -116.271306 kcal Electronic energy + Delta-G solvation = -22393.558435 eV Core-core repulsion = 18706.210051 eV Total energy + Delta-G solvation = -3687.348384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.08974 -50.00881 -41.29757 -39.48811 -37.27092 -35.08947 -33.96138 -31.50521 -31.21229 -28.61416 -27.73653 -27.31040 -24.32868 -24.13412 -22.54414 -20.69262 -18.86558 -18.63731 -18.30326 -18.15316 -17.66067 -17.01370 -16.91766 -16.47903 -16.22348 -15.88695 -15.40099 -15.38209 -14.74268 -14.46392 -14.25117 -14.19972 -14.06739 -13.66910 -13.51774 -13.28456 -12.97234 -12.88508 -12.75079 -12.70828 -12.50090 -12.42970 -12.20575 -12.14851 -11.24060 -10.94845 -10.54603 -10.15616 -9.70176 -9.45505 -8.16631 -6.33863 -0.46989 -0.17085 1.41209 1.43995 1.51007 1.55187 2.06615 2.24231 2.43455 2.96910 2.99697 3.11573 3.31673 3.53296 3.66618 3.93672 4.26724 4.43633 4.46963 4.57710 4.61932 4.69995 4.78474 4.81287 4.83668 4.87116 4.93458 4.99044 5.12146 5.18626 5.40087 5.51710 5.61047 5.62572 5.96046 6.10489 6.61986 6.71897 7.13651 7.38446 8.88009 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.004770 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.780614 B = 5868.558040 C = 6586.582918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.117 4.117 4 C 0.119 3.881 5 F -0.139 7.139 6 C -0.151 4.151 7 C 0.538 3.462 8 O -0.590 6.590 9 N -0.587 5.587 10 C 0.077 3.923 11 C 0.260 3.740 12 H 0.010 0.990 13 C -0.133 4.133 14 C -0.541 4.541 15 H 0.063 0.937 16 C 0.016 3.984 17 N -0.917 5.917 18 Si 0.967 3.033 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.261 1.261 22 C -0.090 4.090 23 C 0.084 3.916 24 F -0.127 7.127 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.186 0.814 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.019 0.981 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.266 0.734 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.439 -0.121 2.352 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.060 4.060 3 C -0.135 4.135 4 C 0.099 3.901 5 F -0.118 7.118 6 C -0.155 4.155 7 C 0.326 3.674 8 O -0.472 6.472 9 N -0.316 5.316 10 C -0.064 4.064 11 C 0.159 3.841 12 H 0.028 0.972 13 C -0.192 4.192 14 C -0.579 4.579 15 H 0.081 0.919 16 C -0.184 4.184 17 N -0.556 5.556 18 Si 0.792 3.208 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.185 1.185 22 C -0.109 4.109 23 C 0.065 3.935 24 F -0.106 7.106 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.203 0.797 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.900 0.251 2.010 21.993 hybrid contribution 1.383 -0.606 -0.357 1.552 sum -20.516 -0.355 1.654 20.586 Atomic orbital electron populations 1.20955 0.86145 1.05407 1.04720 1.20260 0.99314 0.89703 0.96701 1.21122 0.89515 1.00863 1.02023 1.17993 0.91101 0.79633 1.01368 1.91526 1.81254 1.45531 1.93451 1.19717 0.92605 0.94137 1.09069 1.18631 0.87526 0.80128 0.81131 1.90742 1.70641 1.45025 1.40793 1.48188 1.08604 1.39337 1.35454 1.22031 0.96681 0.93302 0.94428 1.18648 0.74501 0.96497 0.94468 0.97241 1.21892 1.03094 0.97157 0.97021 1.21500 0.92248 0.95279 1.48883 0.91911 1.25748 0.97245 1.00844 0.94522 1.70009 1.04232 1.32321 1.49011 0.85474 0.77075 0.79465 0.78789 1.20334 1.20854 1.18503 1.21220 0.93119 0.97841 0.98763 1.17275 0.88662 0.82123 1.05469 1.91527 1.79378 1.45690 1.93956 0.88639 0.90031 0.88042 0.79706 0.91656 0.90479 0.89453 0.96209 0.92993 0.90981 0.92524 0.82744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.82 71.24 0.70 -0.32 16 2 C -0.06 -0.97 5.89 -19.78 -0.12 -1.09 16 3 C -0.12 -2.21 9.66 22.28 0.22 -1.99 16 4 C 0.12 3.53 7.26 22.67 0.16 3.70 16 5 F -0.14 -4.91 16.51 44.97 0.74 -4.17 16 6 C -0.15 -5.07 4.90 -20.06 -0.10 -5.17 16 7 C 0.54 24.39 7.01 86.74 0.61 24.99 16 8 O -0.59 -32.69 15.98 -3.94 -0.06 -32.75 16 9 N -0.59 -26.16 2.75 -830.38 -2.29 -28.44 16 10 C 0.08 2.55 8.35 127.77 1.07 3.62 16 11 C 0.26 13.97 2.63 44.24 0.12 14.09 16 12 H 0.01 0.62 6.91 -2.38 -0.02 0.60 16 13 C -0.13 -6.56 8.94 71.98 0.64 -5.91 16 14 C -0.54 -29.76 8.37 25.60 0.21 -29.54 16 15 H 0.06 3.32 7.56 -2.91 -0.02 3.30 16 16 C 0.02 0.89 5.30 84.66 0.45 1.34 16 17 N -0.92 -53.32 11.32 21.45 0.24 -53.08 16 18 Si 0.97 43.20 29.54 68.60 2.03 45.22 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 22 C -0.09 -2.38 7.59 22.57 0.17 -2.21 16 23 C 0.08 1.76 7.23 22.33 0.16 1.92 16 24 F -0.13 -2.54 16.45 44.97 0.74 -1.80 16 25 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 0.70 7.63 -2.39 -0.02 0.68 16 27 H 0.10 0.48 8.08 -2.39 -0.02 0.46 16 28 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.06 2.00 7.47 -2.39 -0.02 1.98 16 30 H 0.08 2.50 6.44 -2.39 -0.02 2.48 16 31 H 0.09 2.33 5.67 -2.38 -0.01 2.31 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 2.29 6.68 -2.38 -0.02 2.27 16 34 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 35 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 36 H 0.15 3.96 6.57 -2.91 -0.02 3.94 16 Total: -1.00 -72.58 308.54 6.81 -65.76 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.12 Total: 5.82 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 4.30 Total: 3.44 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.04 Total: -81.52 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.06 Total: -32.75 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 1.48 Total: -5.98 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.58 6.81 -65.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134276045.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.510 kcal (2) G-P(sol) polarization free energy of solvation -72.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds